Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3179

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,675,636	-				-1.9
3,675,636	-				-1.6
3,675,636	-				-0.6
3,675,660	-				+0.4
3,675,794	-		Pf6N2E2_3179	0.22	+0.4
3,675,794	-		Pf6N2E2_3179	0.22	-0.6
3,676,326	-		Pf6N2E2_3179	0.75	-2.2
3,676,326	-		Pf6N2E2_3179	0.75	+0.4
3,676,601	-				+0.4
3,676,601	-				+0.4
3,676,601	-				+0.4
3,676,601	-				+0.4
3,676,601	-				-0.6
3,676,601	-				-1.2
3,676,708	-		Pf6N2E2_3180	0.16	+0.4
3,676,708	-		Pf6N2E2_3180	0.16	+0.4
3,676,713	-		Pf6N2E2_3180	0.17	-0.6
3,676,713	-		Pf6N2E2_3180	0.17	+0.4
3,676,713	-		Pf6N2E2_3180	0.17	+0.4
3,676,713	-		Pf6N2E2_3180	0.17	-0.9
3,676,751	-		Pf6N2E2_3180	0.22	+0.4
3,676,754	-		Pf6N2E2_3180	0.22	+0.4
3,676,772	-		Pf6N2E2_3180	0.25	+0.4
3,676,772	-		Pf6N2E2_3180	0.25	-1.2
3,676,772	-		Pf6N2E2_3180	0.25	+0.4
3,676,772	-		Pf6N2E2_3180	0.25	-0.6
3,676,772	-		Pf6N2E2_3180	0.25	-0.6
3,676,787	-		Pf6N2E2_3180	0.27	-1.2
3,676,970	-		Pf6N2E2_3180	0.51	-0.6
3,677,012	-		Pf6N2E2_3180	0.56	+0.4
3,677,012	-		Pf6N2E2_3180	0.56	-0.6
3,677,273	-				-0.6
3,677,343	-				+0.4
3,677,343	-				+0.4
3,677,343	-				-1.2
3,677,343	-				-0.8
3,677,343	-				+0.4
3,677,343	-				+0.4
3,677,343	-				+0.4
3,677,343	-				-1.2
3,677,343	-				+0.4
3,677,343	-				+0.4
3,677,343	-				-1.2
3,677,343	-				-1.2
3,677,343	-				+0.4
3,677,343	-				-0.6
3,677,343	-				-0.6
3,677,343	-				+0.4
3,677,343	-				+0.4
3,677,357	-				-1.2
3,677,357	-				+0.4
3,677,420	-				-0.6
3,677,420	-				-0.6
3,677,420	-				-2.4
3,677,420	-				-1.2
3,677,420	-				+0.4