Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1960

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,323,800	+				+0.3
2,323,804	+				-0.7
2,323,805	-				-0.7
2,323,805	-				-0.7
2,323,805	-				+0.3
2,323,824	+				+0.3
2,323,999	-				+0.3
2,324,016	+				-1.2
2,324,123	+		Pf6N2E2_1959	0.20	+0.8
2,324,251	+		Pf6N2E2_1959	0.37	+0.3
2,324,578	-		Pf6N2E2_1959	0.79	+0.3
2,324,637	-		Pf6N2E2_1959	0.87	+0.3
2,324,664	+				+0.3
2,324,664	+				+1.3
2,324,664	+				+0.3
2,324,665	-				-1.3
2,324,665	-				+0.3
2,324,665	-				+0.3
2,324,665	-				-0.3
2,324,722	+				-0.5
2,324,748	-				-0.7
2,324,881	-				+0.3
2,324,881	-				+0.3
2,325,232	-		Pf6N2E2_1960	0.40	-0.7
2,325,232	-		Pf6N2E2_1960	0.40	+0.3
2,325,330	+		Pf6N2E2_1960	0.48	+0.3
2,325,331	-		Pf6N2E2_1960	0.49	-0.7
2,325,331	-		Pf6N2E2_1960	0.49	-0.7
2,325,355	+		Pf6N2E2_1960	0.51	-0.7
2,325,387	-		Pf6N2E2_1960	0.54	+0.3
2,325,502	+		Pf6N2E2_1960	0.64	+0.3
2,325,502	+		Pf6N2E2_1960	0.64	+0.3
2,325,503	-		Pf6N2E2_1960	0.64	+0.3
2,325,645	+		Pf6N2E2_1960	0.77	+0.3
2,325,645	+		Pf6N2E2_1960	0.77	-0.7
2,325,645	+		Pf6N2E2_1960	0.77	-0.7
2,325,646	-		Pf6N2E2_1960	0.77	-1.4
2,325,646	-		Pf6N2E2_1960	0.77	-3.1
2,325,646	-		Pf6N2E2_1960	0.77	-0.7
2,325,900	-				+0.3
2,326,021	+				+0.3
2,326,021	+				-1.6
2,326,021	+				+0.3
2,326,022	-				+0.3
2,326,022	-				+0.3
2,326,022	-				-1.3
2,326,299	+		Pf6N2E2_1961	0.41	+0.3
2,326,306	-		Pf6N2E2_1961	0.42	-0.7
2,326,345	-		Pf6N2E2_1961	0.47	+0.3
2,326,345	-		Pf6N2E2_1961	0.47	-0.7
2,326,345	-		Pf6N2E2_1961	0.47	+0.8
2,326,401	+		Pf6N2E2_1961	0.54	+0.3
2,326,401	+		Pf6N2E2_1961	0.54	+0.3
2,326,401	+		Pf6N2E2_1961	0.54	-2.4
2,326,401	+		Pf6N2E2_1961	0.54	+0.3
2,326,401	+		Pf6N2E2_1961	0.54	-0.7
2,326,401	+		Pf6N2E2_1961	0.54	+0.3
2,326,405	+		Pf6N2E2_1961	0.54	-0.7
2,326,406	-		Pf6N2E2_1961	0.54	+0.3
2,326,406	-		Pf6N2E2_1961	0.54	+0.3
2,326,581	+		Pf6N2E2_1961	0.75	+1.3
2,326,582	-		Pf6N2E2_1961	0.75	+0.3
2,326,608	+		Pf6N2E2_1961	0.79	+0.3
2,326,609	-		Pf6N2E2_1961	0.79	-0.7
2,326,622	-		Pf6N2E2_1961	0.80	-0.1
2,326,748	+				-1.3
2,326,774	+				-0.7
2,326,774	+				-0.8