Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1670

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,975,825	+		Pf6N2E2_1668	0.69	+0.2
1,975,825	+		Pf6N2E2_1668	0.69	-0.7
1,975,825	+		Pf6N2E2_1668	0.69	+0.2
1,975,826	-		Pf6N2E2_1668	0.69	+1.2
1,975,826	-		Pf6N2E2_1668	0.69	+0.2
1,975,826	-		Pf6N2E2_1668	0.69	-1.4
1,975,851	+		Pf6N2E2_1668	0.70	+0.2
1,975,852	-		Pf6N2E2_1668	0.70	-0.8
1,975,852	-		Pf6N2E2_1668	0.70	+0.2
1,975,874	+		Pf6N2E2_1668	0.71	-1.2
1,975,874	+		Pf6N2E2_1668	0.71	+0.2
1,975,894	+		Pf6N2E2_1668	0.72	+0.2
1,975,895	-		Pf6N2E2_1668	0.72	-0.4
1,976,247	+				+0.2
1,976,282	-				-2.3
1,976,441	+				-1.3
1,976,441	+				+0.2
1,976,441	+				+0.2
1,976,442	-				+0.2
1,976,501	+				-1.4
1,976,535	+				-1.4
1,976,536	-				-1.1
1,976,536	-				+0.2
1,976,536	-				+0.2
1,976,613	+		Pf6N2E2_1669	0.42	-1.6
1,976,744	-				+1.2
1,976,750	+				-0.8
1,976,922	-		Pf6N2E2_1670	0.24	-1.2
1,976,922	-		Pf6N2E2_1670	0.24	-0.8
1,977,182	+		Pf6N2E2_1670	0.75	+0.2
1,977,183	-		Pf6N2E2_1670	0.75	-0.8
1,977,211	-		Pf6N2E2_1670	0.80	+0.2
1,977,258	-		Pf6N2E2_1670	0.90	-1.4
1,977,284	+				+0.2
1,977,284	+				-0.7
1,977,390	+				-0.8
1,977,390	+				+0.2
1,977,391	-				+0.2
1,977,391	-				+0.2
1,977,391	-				-0.8
1,977,391	-				+0.8
1,977,471	-				+0.2
1,977,471	-		Pf6N2E2_1671	0.20	+0.2
1,977,471	-		Pf6N2E2_1671	0.20	-1.4
1,977,472	+		Pf6N2E2_1671	0.20	+0.2
1,977,605	+		Pf6N2E2_1671	0.40	+0.2
1,977,716	+		Pf6N2E2_1671	0.56	+0.2
1,977,716	+		Pf6N2E2_1671	0.56	+0.2
1,977,717	-		Pf6N2E2_1671	0.56	-0.1
1,977,828	-		Pf6N2E2_1671	0.73	+0.2
1,977,837	+		Pf6N2E2_1671	0.74	+0.2
1,978,027	-				+0.2
1,978,029	-				+0.2
1,978,029	-				+0.2
1,978,029	-				-1.4
1,978,035	-				-0.5
1,978,063	+				+0.2
1,978,063	+				+0.2
1,978,067	+				+0.2
1,978,067	+				-0.3
1,978,068	-				+0.2
1,978,068	-				+0.2
1,978,092	+				+0.2
1,978,093	-				-1.6
1,978,143	+				+0.2
1,978,143	+				+0.2
1,978,144	-				+0.2
1,978,144	-				+0.5
1,978,144	-				-1.4
1,978,154	+				+0.2
1,978,155	-				+0.2
1,978,155	-				+0.2
1,978,174	+				-0.1
1,978,191	+				-2.1
1,978,254	+		Pf6N2E2_1672	0.11	+0.2