Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24210

Experiment: L-Hydroxyproline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Hydroxyproline (C)
5,419,246	-				-0.6
5,419,246	-				+0.7
5,419,246	-				+0.6
5,419,276	+				+2.9
5,419,277	-				+1.1
5,419,292	+				-2.3
5,419,293	-				-0.5
5,419,293	-				+0.4
5,419,301	+				+0.1
5,419,301	+				-0.2
5,419,301	+				+0.4
5,419,301	+				-0.2
5,419,301	+				+0.8
5,419,301	+				+0.1
5,419,301	+				+1.0
5,419,301	+				+0.4
5,419,301	+				-0.7
5,419,301	+				-1.2
5,419,302	-				+0.7
5,419,302	-				+0.8
5,419,302	-				+1.4
5,419,302	-				-1.6
5,419,302	-				-0.2
5,419,302	-				-0.4
5,419,302	-				-0.6
5,419,303	+				+0.1
5,419,303	+				-1.4
5,419,303	+				+1.0
5,419,303	+				-0.0
5,419,304	-				-0.2
5,419,304	-				-0.4
5,419,311	+				+0.8
5,419,312	-				+0.4
5,419,324	+				+0.1
5,419,324	+				-2.3
5,419,325	-				-1.7
5,419,375	+				+0.2
5,419,376	-				+1.8
5,419,376	-				-1.2
5,419,376	-				-0.7
5,419,393	-				+0.5
5,419,393	-				-0.3
5,419,416	+				+1.4
5,419,417	-				-1.4
5,419,466	+				-2.4
5,419,470	-				-0.6
5,419,480	+				+0.4
5,419,501	+				-0.7
5,419,501	+				+0.4
5,419,502	-				-0.2
5,419,502	-				-0.4
5,419,505	+				-1.6
5,419,505	+				+0.4
5,419,505	+				+0.2
5,419,506	-				-0.6
5,419,506	-				+0.4
5,419,506	-				-0.2
5,419,511	-				-0.6
5,419,556	+		PFLU_RS24205	0.10	-1.4
5,419,556	+		PFLU_RS24205	0.10	-0.2
5,419,556	+		PFLU_RS24205	0.10	-1.4
5,419,556	+		PFLU_RS24205	0.10	-1.8
5,419,657	-		PFLU_RS24205	0.37	-0.9
5,419,657	-		PFLU_RS24205	0.37	-1.6
5,419,770	+		PFLU_RS24205	0.67	+1.4
5,419,770	+		PFLU_RS24205	0.67	-0.2
5,419,890	+				-2.8
5,419,891	-				+1.2
5,419,915	+				+1.6
5,419,967	+				-2.4
5,419,967	+				-0.2
5,419,968	-				+1.8
5,419,968	-				-1.0
5,419,968	-				-0.8
5,419,986	-				+0.9
5,419,986	-				+0.4
5,420,019	-				+1.9
5,420,092	-				-1.2
5,420,092	-				-0.2
5,420,199	+		PFLU_RS24210	0.15	+0.4
5,420,199	+		PFLU_RS24210	0.15	-0.9
5,420,199	+		PFLU_RS24210	0.15	-0.9
5,420,200	-		PFLU_RS24210	0.15	-0.2
5,420,200	-		PFLU_RS24210	0.15	+1.2
5,420,200	-		PFLU_RS24210	0.15	+0.8
5,420,200	-		PFLU_RS24210	0.15	+0.1
5,420,218	+		PFLU_RS24210	0.16	-1.1
5,420,221	+		PFLU_RS24210	0.17	+0.9
5,420,266	+		PFLU_RS24210	0.20	+0.3
5,420,266	+		PFLU_RS24210	0.20	-0.9
5,420,302	+		PFLU_RS24210	0.22	+0.8
5,420,302	+		PFLU_RS24210	0.22	-0.5
5,420,302	+		PFLU_RS24210	0.22	+0.4
5,420,302	+		PFLU_RS24210	0.22	+1.2
5,420,303	-		PFLU_RS24210	0.22	-0.6
5,420,303	-		PFLU_RS24210	0.22	+0.3
5,420,303	-		PFLU_RS24210	0.22	-1.9
5,420,303	-		PFLU_RS24210	0.22	+1.7
5,420,303	-		PFLU_RS24210	0.22	-0.7
5,420,325	+		PFLU_RS24210	0.24	-1.0
5,420,336	+		PFLU_RS24210	0.25	-0.7
5,420,337	-		PFLU_RS24210	0.25	-1.3
5,420,384	+		PFLU_RS24210	0.28	+0.8
5,420,384	+		PFLU_RS24210	0.28	-1.4
5,420,385	-		PFLU_RS24210	0.28	+0.8
5,420,395	+		PFLU_RS24210	0.29	+0.2
5,420,396	-		PFLU_RS24210	0.29	+1.4
5,420,401	-		PFLU_RS24210	0.29	-0.2
5,420,450	+		PFLU_RS24210	0.33	+0.1
5,420,454	+		PFLU_RS24210	0.33	+1.6
5,420,454	+		PFLU_RS24210	0.33	-0.0
5,420,454	+		PFLU_RS24210	0.33	+0.9
5,420,454	+		PFLU_RS24210	0.33	-1.4
5,420,454	+		PFLU_RS24210	0.33	+1.4
5,420,455	-		PFLU_RS24210	0.33	-1.8
5,420,455	-		PFLU_RS24210	0.33	+1.0
5,420,455	-		PFLU_RS24210	0.33	+0.5
5,420,455	-		PFLU_RS24210	0.33	+0.1
5,420,455	-		PFLU_RS24210	0.33	-1.3
5,420,455	-		PFLU_RS24210	0.33	+0.7
5,420,455	-		PFLU_RS24210	0.33	+1.9
5,420,455	-		PFLU_RS24210	0.33	+0.9
5,420,455	-		PFLU_RS24210	0.33	+0.2
5,420,455	-		PFLU_RS24210	0.33	+1.4
5,420,455	-		PFLU_RS24210	0.33	+0.9
5,420,495	-		PFLU_RS24210	0.36	+1.4
5,420,532	+		PFLU_RS24210	0.38	-0.0
5,420,532	+		PFLU_RS24210	0.38	+0.9
5,420,532	+		PFLU_RS24210	0.38	-0.8
5,420,533	-		PFLU_RS24210	0.38	+1.1
5,420,533	-		PFLU_RS24210	0.38	+0.4
5,420,533	-		PFLU_RS24210	0.38	-0.9
5,420,533	-		PFLU_RS24210	0.38	+0.4
5,420,591	+		PFLU_RS24210	0.43	+1.1
5,420,591	+		PFLU_RS24210	0.43	-0.3
5,420,591	+		PFLU_RS24210	0.43	+1.0
5,420,591	+		PFLU_RS24210	0.43	+0.8
5,420,592	-		PFLU_RS24210	0.43	-0.6
5,420,592	-		PFLU_RS24210	0.43	-1.6
5,420,592	-		PFLU_RS24210	0.43	+1.4
5,420,592	-		PFLU_RS24210	0.43	-0.6
5,420,717	+		PFLU_RS24210	0.51	+1.2
5,420,718	-		PFLU_RS24210	0.51	-1.9
5,420,718	-		PFLU_RS24210	0.51	-1.4
5,420,718	-		PFLU_RS24210	0.51	-1.5
5,420,718	-		PFLU_RS24210	0.51	+1.2
5,420,812	+		PFLU_RS24210	0.58	+0.4
5,420,812	+		PFLU_RS24210	0.58	+0.8
5,420,813	-		PFLU_RS24210	0.58	+1.2
5,420,813	-		PFLU_RS24210	0.58	-1.2
5,420,813	-		PFLU_RS24210	0.58	+0.3
5,420,822	+		PFLU_RS24210	0.59	+0.5
5,420,822	+		PFLU_RS24210	0.59	+0.1
5,420,822	+		PFLU_RS24210	0.59	+0.5
5,420,823	-		PFLU_RS24210	0.59	-1.0
5,420,823	-		PFLU_RS24210	0.59	+0.2
5,420,823	-		PFLU_RS24210	0.59	-0.9
5,420,823	-		PFLU_RS24210	0.59	+1.0
5,420,999	+		PFLU_RS24210	0.71	-1.6
5,421,000	-		PFLU_RS24210	0.71	-0.5
5,421,062	+		PFLU_RS24210	0.75	+1.3
5,421,063	-		PFLU_RS24210	0.76	+2.9
5,421,084	-		PFLU_RS24210	0.77	+0.1
5,421,084	-		PFLU_RS24210	0.77	+0.7
5,421,092	+		PFLU_RS24210	0.78	+2.0
5,421,092	+		PFLU_RS24210	0.78	+0.7
5,421,128	+		PFLU_RS24210	0.80	+1.0
5,421,128	+		PFLU_RS24210	0.80	-1.8
5,421,129	-		PFLU_RS24210	0.80	+0.1
5,421,129	-		PFLU_RS24210	0.80	+1.1
5,421,129	-		PFLU_RS24210	0.80	+1.1
5,421,214	+		PFLU_RS24210	0.86	-1.6
5,421,215	-		PFLU_RS24210	0.86	+0.1
5,421,215	-		PFLU_RS24210	0.86	+1.0
5,421,284	+				-1.0
5,421,284	+				-1.5
5,421,285	-				+0.2
5,421,341	-				+0.3
5,421,341	-				+0.1
5,421,373	-				-2.6
5,421,386	+				+1.0
5,421,386	+				+1.0
5,421,386	+				-1.2
5,421,387	-				+0.9
5,421,387	-				+0.4
5,421,387	-				+1.2
5,421,387	-				+1.1
5,421,393	-				-0.6
5,421,424	+				+0.4
5,421,424	+				+0.9
5,421,444	+				+0.1
5,421,445	-				+0.1
5,421,535	+				-1.9
5,421,535	+				+0.7
5,421,535	+				-1.3
5,421,535	+				+0.3
5,421,535	+				+0.5
5,421,535	+				+2.4
5,421,535	+				+1.7
5,421,716	+		PFLU_RS24215	0.20	-0.3
5,421,716	+		PFLU_RS24215	0.20	-0.1
5,421,717	-		PFLU_RS24215	0.20	-1.8
5,421,798	+		PFLU_RS24215	0.32	+1.0
5,421,798	+		PFLU_RS24215	0.32	-0.2
5,421,798	+		PFLU_RS24215	0.32	+1.4
5,421,798	+		PFLU_RS24215	0.32	-2.6
5,421,798	+		PFLU_RS24215	0.32	-0.9
5,421,798	+		PFLU_RS24215	0.32	+0.0
5,421,798	+		PFLU_RS24215	0.32	+0.3
5,421,798	+		PFLU_RS24215	0.32	+0.4
5,421,798	+		PFLU_RS24215	0.32	-0.8
5,421,798	+		PFLU_RS24215	0.32	+2.4
5,421,798	+		PFLU_RS24215	0.32	-0.2
5,421,798	+		PFLU_RS24215	0.32	-0.8
5,421,799	-		PFLU_RS24215	0.32	+1.9
5,421,799	-		PFLU_RS24215	0.32	-0.5
5,421,799	-		PFLU_RS24215	0.32	+0.4
5,421,799	-		PFLU_RS24215	0.32	+0.9
5,421,799	-		PFLU_RS24215	0.32	-0.2
5,421,799	-		PFLU_RS24215	0.32	-2.8
5,421,799	-		PFLU_RS24215	0.32	+0.2
5,421,799	-		PFLU_RS24215	0.32	-1.4
5,421,799	-		PFLU_RS24215	0.32	+0.2
5,421,799	-		PFLU_RS24215	0.32	-0.9
5,421,799	-		PFLU_RS24215	0.32	+0.8
5,421,799	-		PFLU_RS24215	0.32	-0.0
5,421,799	-		PFLU_RS24215	0.32	-0.2
5,421,799	-		PFLU_RS24215	0.32	+0.8
5,421,799	-		PFLU_RS24215	0.32	+0.8
5,421,799	-		PFLU_RS24215	0.32	+0.4
5,421,799	-		PFLU_RS24215	0.32	-1.1
5,421,822	-		PFLU_RS24215	0.35	-0.3
5,421,859	+		PFLU_RS24215	0.40	-0.3
5,421,859	+		PFLU_RS24215	0.40	+0.2
5,421,860	-		PFLU_RS24215	0.41	-0.1
5,421,860	-		PFLU_RS24215	0.41	+0.3
5,421,860	-		PFLU_RS24215	0.41	-1.3
5,421,860	-		PFLU_RS24215	0.41	-1.0
5,421,860	-		PFLU_RS24215	0.41	-0.8
5,421,868	+		PFLU_RS24215	0.42	+0.4
5,421,868	+		PFLU_RS24215	0.42	+0.6
5,421,868	+		PFLU_RS24215	0.42	-1.9
5,421,869	-		PFLU_RS24215	0.42	+1.4
5,421,869	-		PFLU_RS24215	0.42	-0.4
5,421,869	-		PFLU_RS24215	0.42	+0.7
5,421,890	+		PFLU_RS24215	0.45	-1.1
5,421,890	+		PFLU_RS24215	0.45	+0.4
5,421,891	-		PFLU_RS24215	0.45	+1.1
5,421,951	+		PFLU_RS24215	0.54	+1.1
5,422,033	-		PFLU_RS24215	0.66	-0.9
5,422,208	-				-1.8
5,422,225	+				+0.1
5,422,226	-				-1.0
5,422,226	-				+0.8
5,422,348	+				+0.6
5,422,348	+				+0.6
5,422,348	+				+0.3
5,422,349	-				+0.7
5,422,349	-				+0.2