Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18830

Experiment: L-Hydroxyproline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18825 and PFLU_RS18830 are separated by 155 nucleotidesPFLU_RS18830 and PFLU_RS18835 are separated by 92 nucleotides PFLU_RS18825: PFLU_RS18825 - SfnB family sulfur acquisition oxidoreductase, at 4,255,485 to 4,256,681 _RS18825 PFLU_RS18830: PFLU_RS18830 - helix-turn-helix domain-containing protein, at 4,256,837 to 4,257,400 _RS18830 PFLU_RS18835: PFLU_RS18835 - DMT family transporter, at 4,257,493 to 4,258,422 _RS18835 Position (kb) 4256 4257 4258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4255.901 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4255.901 kb on - strand, within PFLU_RS18825at 4256.037 kb on + strand, within PFLU_RS18825at 4256.174 kb on + strand, within PFLU_RS18825at 4256.209 kb on + strand, within PFLU_RS18825at 4256.209 kb on + strand, within PFLU_RS18825at 4256.209 kb on + strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.210 kb on - strand, within PFLU_RS18825at 4256.230 kb on + strand, within PFLU_RS18825at 4256.231 kb on - strand, within PFLU_RS18825at 4256.231 kb on - strand, within PFLU_RS18825at 4256.231 kb on - strand, within PFLU_RS18825at 4256.341 kb on + strand, within PFLU_RS18825at 4256.341 kb on + strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.342 kb on - strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.470 kb on + strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.471 kb on - strand, within PFLU_RS18825at 4256.651 kb on + strandat 4256.651 kb on + strandat 4256.652 kb on - strandat 4256.784 kb on + strandat 4256.838 kb on + strandat 4256.838 kb on + strandat 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.917 kb on + strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.918 kb on - strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.919 kb on + strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.920 kb on - strand, within PFLU_RS18830at 4256.982 kb on + strand, within PFLU_RS18830at 4256.982 kb on + strand, within PFLU_RS18830at 4256.983 kb on - strand, within PFLU_RS18830at 4257.098 kb on + strand, within PFLU_RS18830at 4257.402 kb on - strandat 4257.403 kb on + strandat 4257.432 kb on + strandat 4257.432 kb on + strandat 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.818 kb on + strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.819 kb on - strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.820 kb on + strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.821 kb on - strand, within PFLU_RS18835at 4257.854 kb on + strand, within PFLU_RS18835at 4257.854 kb on + strand, within PFLU_RS18835at 4257.854 kb on + strand, within PFLU_RS18835at 4257.855 kb on - strand, within PFLU_RS18835at 4257.855 kb on - strand, within PFLU_RS18835at 4257.855 kb on - strand, within PFLU_RS18835at 4257.855 kb on - strand, within PFLU_RS18835at 4258.243 kb on + strand, within PFLU_RS18835at 4258.243 kb on + strand, within PFLU_RS18835at 4258.243 kb on + strand, within PFLU_RS18835at 4258.243 kb on + strand, within PFLU_RS18835at 4258.243 kb on + strand, within PFLU_RS18835at 4258.243 kb on + strand, within PFLU_RS18835at 4258.244 kb on - strand, within PFLU_RS18835at 4258.244 kb on - strand, within PFLU_RS18835at 4258.244 kb on - strand, within PFLU_RS18835at 4258.244 kb on - strand, within PFLU_RS18835at 4258.244 kb on - strand, within PFLU_RS18835at 4258.365 kb on + strandat 4258.365 kb on + strandat 4258.365 kb on + strandat 4258.365 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Hydroxyproline (C)
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4,255,901 - PFLU_RS18825 0.35 -0.7
4,255,901 - PFLU_RS18825 0.35 -0.7
4,255,901 - PFLU_RS18825 0.35 -1.0
4,255,901 - PFLU_RS18825 0.35 +0.8
4,256,037 + PFLU_RS18825 0.46 +0.3
4,256,174 + PFLU_RS18825 0.58 +1.1
4,256,209 + PFLU_RS18825 0.60 +0.4
4,256,209 + PFLU_RS18825 0.60 -0.5
4,256,209 + PFLU_RS18825 0.60 +1.0
4,256,210 - PFLU_RS18825 0.61 -1.5
4,256,210 - PFLU_RS18825 0.61 +1.5
4,256,210 - PFLU_RS18825 0.61 -0.9
4,256,210 - PFLU_RS18825 0.61 -0.5
4,256,230 + PFLU_RS18825 0.62 +0.8
4,256,231 - PFLU_RS18825 0.62 +1.0
4,256,231 - PFLU_RS18825 0.62 +0.0
4,256,231 - PFLU_RS18825 0.62 -0.7
4,256,341 + PFLU_RS18825 0.72 +1.1
4,256,341 + PFLU_RS18825 0.72 +0.0
4,256,342 - PFLU_RS18825 0.72 -0.6
4,256,342 - PFLU_RS18825 0.72 -1.2
4,256,342 - PFLU_RS18825 0.72 +0.1
4,256,342 - PFLU_RS18825 0.72 -1.9
4,256,470 + PFLU_RS18825 0.82 -1.1
4,256,470 + PFLU_RS18825 0.82 +0.5
4,256,470 + PFLU_RS18825 0.82 +0.8
4,256,470 + PFLU_RS18825 0.82 -0.9
4,256,470 + PFLU_RS18825 0.82 -1.2
4,256,470 + PFLU_RS18825 0.82 +1.7
4,256,471 - PFLU_RS18825 0.82 +0.5
4,256,471 - PFLU_RS18825 0.82 -0.7
4,256,471 - PFLU_RS18825 0.82 -0.6
4,256,471 - PFLU_RS18825 0.82 +0.4
4,256,471 - PFLU_RS18825 0.82 +1.5
4,256,471 - PFLU_RS18825 0.82 -0.4
4,256,471 - PFLU_RS18825 0.82 -0.3
4,256,471 - PFLU_RS18825 0.82 -0.6
4,256,471 - PFLU_RS18825 0.82 +1.0
4,256,651 + -1.8
4,256,651 + -0.7
4,256,652 - -0.1
4,256,784 + -0.5
4,256,838 + -1.7
4,256,838 + -0.1
4,256,917 + PFLU_RS18830 0.14 +2.4
4,256,917 + PFLU_RS18830 0.14 +2.2
4,256,917 + PFLU_RS18830 0.14 +3.7
4,256,917 + PFLU_RS18830 0.14 +1.7
4,256,917 + PFLU_RS18830 0.14 +3.3
4,256,917 + PFLU_RS18830 0.14 +3.0
4,256,917 + PFLU_RS18830 0.14 +1.8
4,256,917 + PFLU_RS18830 0.14 +2.9
4,256,918 - PFLU_RS18830 0.14 +3.4
4,256,918 - PFLU_RS18830 0.14 +2.9
4,256,918 - PFLU_RS18830 0.14 +3.0
4,256,918 - PFLU_RS18830 0.14 +1.7
4,256,918 - PFLU_RS18830 0.14 +2.8
4,256,918 - PFLU_RS18830 0.14 +2.0
4,256,918 - PFLU_RS18830 0.14 +3.5
4,256,918 - PFLU_RS18830 0.14 +2.1
4,256,918 - PFLU_RS18830 0.14 +3.7
4,256,918 - PFLU_RS18830 0.14 +2.2
4,256,918 - PFLU_RS18830 0.14 +2.2
4,256,918 - PFLU_RS18830 0.14 +2.7
4,256,919 + PFLU_RS18830 0.15 +2.5
4,256,919 + PFLU_RS18830 0.15 +2.9
4,256,919 + PFLU_RS18830 0.15 +3.3
4,256,919 + PFLU_RS18830 0.15 +2.5
4,256,919 + PFLU_RS18830 0.15 +4.0
4,256,919 + PFLU_RS18830 0.15 +2.6
4,256,919 + PFLU_RS18830 0.15 +1.7
4,256,919 + PFLU_RS18830 0.15 +2.9
4,256,919 + PFLU_RS18830 0.15 +4.2
4,256,919 + PFLU_RS18830 0.15 +3.3
4,256,919 + PFLU_RS18830 0.15 +2.6
4,256,919 + PFLU_RS18830 0.15 +2.9
4,256,919 + PFLU_RS18830 0.15 +2.9
4,256,919 + PFLU_RS18830 0.15 +0.6
4,256,919 + PFLU_RS18830 0.15 +2.5
4,256,919 + PFLU_RS18830 0.15 +3.2
4,256,920 - PFLU_RS18830 0.15 +2.6
4,256,920 - PFLU_RS18830 0.15 +1.1
4,256,920 - PFLU_RS18830 0.15 +2.4
4,256,920 - PFLU_RS18830 0.15 +1.9
4,256,920 - PFLU_RS18830 0.15 +3.4
4,256,920 - PFLU_RS18830 0.15 +4.5
4,256,920 - PFLU_RS18830 0.15 +2.9
4,256,920 - PFLU_RS18830 0.15 +1.1
4,256,920 - PFLU_RS18830 0.15 +3.6
4,256,920 - PFLU_RS18830 0.15 +2.6
4,256,920 - PFLU_RS18830 0.15 +3.2
4,256,920 - PFLU_RS18830 0.15 -1.7
4,256,920 - PFLU_RS18830 0.15 +2.5
4,256,920 - PFLU_RS18830 0.15 -0.3
4,256,982 + PFLU_RS18830 0.26 +3.9
4,256,982 + PFLU_RS18830 0.26 +3.4
4,256,983 - PFLU_RS18830 0.26 +2.3
4,257,098 + PFLU_RS18830 0.46 +1.8
4,257,402 - +0.7
4,257,403 + +3.0
4,257,432 + +0.3
4,257,432 + -0.9
4,257,818 + PFLU_RS18835 0.35 -0.2
4,257,818 + PFLU_RS18835 0.35 +0.1
4,257,818 + PFLU_RS18835 0.35 +0.8
4,257,818 + PFLU_RS18835 0.35 -0.6
4,257,818 + PFLU_RS18835 0.35 +1.3
4,257,818 + PFLU_RS18835 0.35 +1.3
4,257,818 + PFLU_RS18835 0.35 -0.6
4,257,818 + PFLU_RS18835 0.35 +1.4
4,257,818 + PFLU_RS18835 0.35 -1.0
4,257,818 + PFLU_RS18835 0.35 -0.6
4,257,818 + PFLU_RS18835 0.35 -2.5
4,257,818 + PFLU_RS18835 0.35 +0.1
4,257,818 + PFLU_RS18835 0.35 -1.4
4,257,818 + PFLU_RS18835 0.35 +0.5
4,257,818 + PFLU_RS18835 0.35 +0.1
4,257,819 - PFLU_RS18835 0.35 -0.0
4,257,819 - PFLU_RS18835 0.35 +0.5
4,257,819 - PFLU_RS18835 0.35 +0.3
4,257,819 - PFLU_RS18835 0.35 -0.9
4,257,819 - PFLU_RS18835 0.35 -2.0
4,257,819 - PFLU_RS18835 0.35 -1.6
4,257,819 - PFLU_RS18835 0.35 -0.7
4,257,819 - PFLU_RS18835 0.35 -0.1
4,257,819 - PFLU_RS18835 0.35 -3.0
4,257,819 - PFLU_RS18835 0.35 +0.1
4,257,819 - PFLU_RS18835 0.35 +0.9
4,257,819 - PFLU_RS18835 0.35 -1.9
4,257,819 - PFLU_RS18835 0.35 +1.4
4,257,819 - PFLU_RS18835 0.35 +0.6
4,257,819 - PFLU_RS18835 0.35 +0.1
4,257,819 - PFLU_RS18835 0.35 -2.8
4,257,819 - PFLU_RS18835 0.35 -3.0
4,257,819 - PFLU_RS18835 0.35 -1.0
4,257,819 - PFLU_RS18835 0.35 +0.0
4,257,820 + PFLU_RS18835 0.35 +0.7
4,257,820 + PFLU_RS18835 0.35 -0.7
4,257,820 + PFLU_RS18835 0.35 +0.5
4,257,820 + PFLU_RS18835 0.35 -2.2
4,257,820 + PFLU_RS18835 0.35 -1.0
4,257,820 + PFLU_RS18835 0.35 +1.5
4,257,820 + PFLU_RS18835 0.35 +0.3
4,257,820 + PFLU_RS18835 0.35 +0.8
4,257,820 + PFLU_RS18835 0.35 +0.9
4,257,820 + PFLU_RS18835 0.35 -0.7
4,257,820 + PFLU_RS18835 0.35 +0.5
4,257,820 + PFLU_RS18835 0.35 -0.5
4,257,820 + PFLU_RS18835 0.35 +1.3
4,257,820 + PFLU_RS18835 0.35 +1.0
4,257,820 + PFLU_RS18835 0.35 -0.9
4,257,820 + PFLU_RS18835 0.35 +2.1
4,257,820 + PFLU_RS18835 0.35 -2.0
4,257,820 + PFLU_RS18835 0.35 +1.5
4,257,820 + PFLU_RS18835 0.35 +0.1
4,257,820 + PFLU_RS18835 0.35 -0.9
4,257,820 + PFLU_RS18835 0.35 -0.7
4,257,820 + PFLU_RS18835 0.35 -1.6
4,257,820 + PFLU_RS18835 0.35 -0.9
4,257,820 + PFLU_RS18835 0.35 -0.3
4,257,821 - PFLU_RS18835 0.35 -1.8
4,257,821 - PFLU_RS18835 0.35 -2.2
4,257,821 - PFLU_RS18835 0.35 +0.5
4,257,821 - PFLU_RS18835 0.35 +0.8
4,257,821 - PFLU_RS18835 0.35 +0.3
4,257,821 - PFLU_RS18835 0.35 -3.6
4,257,821 - PFLU_RS18835 0.35 -0.6
4,257,821 - PFLU_RS18835 0.35 -2.4
4,257,821 - PFLU_RS18835 0.35 -1.5
4,257,821 - PFLU_RS18835 0.35 -0.5
4,257,821 - PFLU_RS18835 0.35 -1.7
4,257,821 - PFLU_RS18835 0.35 -0.9
4,257,821 - PFLU_RS18835 0.35 -0.9
4,257,821 - PFLU_RS18835 0.35 +1.5
4,257,854 + PFLU_RS18835 0.39 +1.8
4,257,854 + PFLU_RS18835 0.39 -0.5
4,257,854 + PFLU_RS18835 0.39 -0.1
4,257,855 - PFLU_RS18835 0.39 +0.3
4,257,855 - PFLU_RS18835 0.39 +0.1
4,257,855 - PFLU_RS18835 0.39 -0.1
4,257,855 - PFLU_RS18835 0.39 +0.1
4,258,243 + PFLU_RS18835 0.81 +0.1
4,258,243 + PFLU_RS18835 0.81 +0.9
4,258,243 + PFLU_RS18835 0.81 -0.6
4,258,243 + PFLU_RS18835 0.81 -1.3
4,258,243 + PFLU_RS18835 0.81 -2.3
4,258,243 + PFLU_RS18835 0.81 -0.9
4,258,244 - PFLU_RS18835 0.81 +1.3
4,258,244 - PFLU_RS18835 0.81 +0.4
4,258,244 - PFLU_RS18835 0.81 +0.9
4,258,244 - PFLU_RS18835 0.81 +0.4
4,258,244 - PFLU_RS18835 0.81 +0.1
4,258,365 + +0.1
4,258,365 + +0.9
4,258,365 + -0.1
4,258,365 + +2.1

Or see this region's nucleotide sequence