Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16195

Experiment: L-Hydroxyproline (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Hydroxyproline (C)
3,678,022	+				+0.1
3,678,022	+				-2.2
3,678,022	+				-1.6
3,678,022	+				+1.7
3,678,022	+				+1.9
3,678,023	-				+0.7
3,678,023	-				-0.9
3,678,023	-				-0.2
3,678,023	-				+0.0
3,678,055	+				-3.4
3,678,106	-		PFLU_RS16190	0.10	-1.2
3,678,415	-		PFLU_RS16190	0.50	-2.5
3,678,462	+		PFLU_RS16190	0.57	-1.6
3,678,463	-		PFLU_RS16190	0.57	-0.6
3,678,491	+		PFLU_RS16190	0.60	-2.2
3,678,491	+		PFLU_RS16190	0.60	-1.9
3,678,492	-		PFLU_RS16190	0.61	-1.9
3,678,532	-		PFLU_RS16190	0.66	-1.4
3,678,639	+		PFLU_RS16190	0.80	-1.6
3,678,639	+		PFLU_RS16190	0.80	-1.9
3,678,639	+		PFLU_RS16190	0.80	-2.6
3,678,639	+		PFLU_RS16190	0.80	+0.4
3,678,640	-		PFLU_RS16190	0.80	-0.4
3,678,701	+		PFLU_RS16190	0.88	-0.6
3,678,701	+		PFLU_RS16190	0.88	-1.6
3,678,702	-		PFLU_RS16190	0.88	-1.9
3,678,722	+				-0.1
3,678,723	-				-0.6
3,678,723	-				-3.5
3,678,723	-				-0.6
3,678,827	-				-0.2
3,678,936	-				-2.6
3,678,952	+				+2.2
3,678,980	+				-1.4
3,678,980	+				-2.6
3,678,980	+				-1.6
3,678,981	-				-2.9
3,678,981	-				-2.6
3,678,981	-				-1.1
3,678,981	-				-1.4
3,679,164	+		PFLU_RS16195	0.11	-2.4
3,679,165	-		PFLU_RS16195	0.11	-2.7
3,679,165	-		PFLU_RS16195	0.11	-2.2
3,679,221	+		PFLU_RS16195	0.15	-2.0
3,679,222	-		PFLU_RS16195	0.15	-2.9
3,679,245	+		PFLU_RS16195	0.16	-2.4
3,679,259	+		PFLU_RS16195	0.17	-3.9
3,679,259	+		PFLU_RS16195	0.17	-0.6
3,679,260	-		PFLU_RS16195	0.17	-2.3
3,679,260	-		PFLU_RS16195	0.17	-1.0
3,679,317	+		PFLU_RS16195	0.21	-2.0
3,679,425	+		PFLU_RS16195	0.27	-1.9
3,679,699	+		PFLU_RS16195	0.44	-2.5
3,679,719	+		PFLU_RS16195	0.45	-2.9
3,679,719	+		PFLU_RS16195	0.45	-2.9
3,679,719	+		PFLU_RS16195	0.45	-2.2
3,679,719	+		PFLU_RS16195	0.45	-0.0
3,679,719	+		PFLU_RS16195	0.45	-2.4
3,679,719	+		PFLU_RS16195	0.45	-1.9
3,679,719	+		PFLU_RS16195	0.45	-3.3
3,679,719	+		PFLU_RS16195	0.45	-2.9
3,679,719	+		PFLU_RS16195	0.45	-3.0
3,679,719	+		PFLU_RS16195	0.45	-2.2
3,679,719	+		PFLU_RS16195	0.45	-2.7
3,679,720	-		PFLU_RS16195	0.45	-0.6
3,679,720	-		PFLU_RS16195	0.45	-0.0
3,679,854	+		PFLU_RS16195	0.54	-2.2
3,679,905	+		PFLU_RS16195	0.57	-2.2
3,679,905	+		PFLU_RS16195	0.57	-1.0
3,679,905	+		PFLU_RS16195	0.57	-3.3
3,679,905	+		PFLU_RS16195	0.57	-3.6
3,679,905	+		PFLU_RS16195	0.57	-0.0
3,679,905	+		PFLU_RS16195	0.57	-3.0
3,679,905	+		PFLU_RS16195	0.57	-1.4
3,679,905	+		PFLU_RS16195	0.57	-3.4
3,679,905	+		PFLU_RS16195	0.57	-1.5
3,679,906	-		PFLU_RS16195	0.57	-2.4
3,679,906	-		PFLU_RS16195	0.57	-2.6
3,679,906	-		PFLU_RS16195	0.57	-1.0
3,679,906	-		PFLU_RS16195	0.57	-2.0
3,679,906	-		PFLU_RS16195	0.57	-2.2
3,679,906	-		PFLU_RS16195	0.57	-1.6
3,679,906	-		PFLU_RS16195	0.57	-2.2
3,679,932	+		PFLU_RS16195	0.58	-2.5
3,679,932	+		PFLU_RS16195	0.58	-3.4
3,679,933	-		PFLU_RS16195	0.59	-2.7
3,679,933	-		PFLU_RS16195	0.59	-2.0
3,679,933	-		PFLU_RS16195	0.59	-1.0
3,679,933	-		PFLU_RS16195	0.59	-1.0
3,679,933	-		PFLU_RS16195	0.59	-2.2
3,679,976	+		PFLU_RS16195	0.61	-1.0
3,679,977	-		PFLU_RS16195	0.61	-0.0
3,679,977	-		PFLU_RS16195	0.61	-2.0
3,680,106	+		PFLU_RS16195	0.69	+0.8
3,680,107	-		PFLU_RS16195	0.69	-0.6
3,680,107	-		PFLU_RS16195	0.69	-2.5
3,680,107	-		PFLU_RS16195	0.69	-1.4
3,680,107	-		PFLU_RS16195	0.69	-1.4
3,680,233	-		PFLU_RS16195	0.77	-0.6
3,680,233	-		PFLU_RS16195	0.77	-1.6
3,680,233	-		PFLU_RS16195	0.77	-3.1
3,680,250	-		PFLU_RS16195	0.78	-1.4
3,680,295	+		PFLU_RS16195	0.81	-2.4
3,680,295	+		PFLU_RS16195	0.81	-0.0
3,680,295	+		PFLU_RS16195	0.81	-2.0
3,680,295	+		PFLU_RS16195	0.81	+0.6
3,680,296	-		PFLU_RS16195	0.81	-1.0
3,680,296	-		PFLU_RS16195	0.81	-2.4
3,680,296	-		PFLU_RS16195	0.81	-2.0
3,680,296	-		PFLU_RS16195	0.81	-1.0
3,680,379	+		PFLU_RS16195	0.86	-1.4
3,680,379	+		PFLU_RS16195	0.86	+0.2
3,680,379	+		PFLU_RS16195	0.86	+2.5
3,680,379	+		PFLU_RS16195	0.86	+1.1
3,680,380	-		PFLU_RS16195	0.86	-1.9
3,680,380	-		PFLU_RS16195	0.86	-1.9
3,680,380	-		PFLU_RS16195	0.86	-1.0
3,680,477	-				-1.7
3,680,484	+				+1.3
3,680,484	+				+2.1
3,680,484	+				+1.0
3,680,484	+				+0.7
3,680,485	-				-2.4
3,680,485	-				-2.6
3,680,485	-				-0.6
3,680,485	-				-0.6
3,680,485	-				-3.0
3,680,485	-				-1.0
3,680,485	-				-2.0
3,680,485	-				-2.0
3,680,485	-				-2.0
3,680,487	+				+0.1
3,680,488	-				-2.0
3,680,785	+		PFLU_RS16200	0.18	-2.9
3,680,785	+		PFLU_RS16200	0.18	-2.7
3,680,810	+		PFLU_RS16200	0.20	-3.6
3,680,810	+		PFLU_RS16200	0.20	-2.8
3,680,811	-		PFLU_RS16200	0.20	-2.9
3,680,976	+		PFLU_RS16200	0.38	-2.5
3,680,977	-		PFLU_RS16200	0.38	-2.5
3,680,977	-		PFLU_RS16200	0.38	-2.2
3,681,173	+		PFLU_RS16200	0.60	-2.0
3,681,212	-		PFLU_RS16200	0.64	-2.4
3,681,244	+		PFLU_RS16200	0.67	+0.2
3,681,244	+		PFLU_RS16200	0.67	-2.6
3,681,312	-		PFLU_RS16200	0.75	-2.6
3,681,312	-		PFLU_RS16200	0.75	-0.6
3,681,312	-		PFLU_RS16200	0.75	-2.6
3,681,437	+		PFLU_RS16200	0.88	-3.6
3,681,485	+				-2.2
3,681,485	+				-1.0
3,681,485	+				-2.9
3,681,485	+				-2.9
3,681,485	+				-1.0
3,681,485	+				-1.0
3,681,485	+				-2.0
3,681,486	-				-1.6
3,681,486	-				-3.0
3,681,486	-				-2.9
3,681,486	-				-1.4
3,681,486	-				-3.6
3,681,486	-				-3.3
3,681,486	-				-2.7
3,681,486	-				-1.9
3,681,487	+				-2.0
3,681,487	+				-2.6
3,681,487	+				-3.5
3,681,487	+				-1.4
3,681,487	+				-3.0
3,681,487	+				-3.2
3,681,488	-				-1.4
3,681,488	-				-1.4
3,681,488	-				-3.4
3,681,488	-				-0.0
3,681,488	-				-3.0
3,681,563	-				+0.2
3,681,583	+				-2.2
3,681,584	-				-2.2
3,681,584	-				-0.6