Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14915

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
3,334,293	+		PFLU_RS14905	0.76	+0.9
3,334,416	-				-2.0
3,334,438	+				+0.2
3,334,438	+				+0.7
3,334,463	+				+2.0
3,334,463	+				-0.4
3,334,463	+				+1.0
3,334,464	-				+1.4
3,334,464	-				+2.0
3,334,676	-		PFLU_RS14910	0.26	+0.5
3,334,728	+		PFLU_RS14910	0.35	-1.5
3,334,728	+		PFLU_RS14910	0.35	-0.5
3,334,728	+		PFLU_RS14910	0.35	+0.0
3,334,728	+		PFLU_RS14910	0.35	+0.0
3,334,728	+		PFLU_RS14910	0.35	-0.5
3,334,729	-		PFLU_RS14910	0.35	+0.7
3,334,729	-		PFLU_RS14910	0.35	+0.0
3,334,729	-		PFLU_RS14910	0.35	+0.5
3,334,729	-		PFLU_RS14910	0.35	-2.0
3,334,729	-		PFLU_RS14910	0.35	+1.2
3,334,729	-		PFLU_RS14910	0.35	+0.9
3,334,729	-		PFLU_RS14910	0.35	+0.2
3,334,743	+		PFLU_RS14910	0.37	+1.4
3,334,744	-		PFLU_RS14910	0.38	-1.6
3,334,762	+		PFLU_RS14910	0.41	-1.5
3,334,762	+		PFLU_RS14910	0.41	-1.3
3,334,762	+		PFLU_RS14910	0.41	+1.9
3,334,762	+		PFLU_RS14910	0.41	-0.2
3,334,762	+		PFLU_RS14910	0.41	-1.0
3,334,800	+		PFLU_RS14910	0.47	-1.8
3,334,801	-		PFLU_RS14910	0.47	+2.9
3,334,801	-		PFLU_RS14910	0.47	+0.0
3,334,816	+		PFLU_RS14910	0.50	-1.5
3,334,816	+		PFLU_RS14910	0.50	-1.5
3,334,816	+		PFLU_RS14910	0.50	+0.4
3,334,816	+		PFLU_RS14910	0.50	-1.5
3,334,816	+		PFLU_RS14910	0.50	+1.2
3,334,817	-		PFLU_RS14910	0.50	+1.8
3,334,817	-		PFLU_RS14910	0.50	+0.2
3,334,873	+		PFLU_RS14910	0.59	+0.9
3,334,881	+		PFLU_RS14910	0.61	+0.0
3,334,881	+		PFLU_RS14910	0.61	-1.0
3,334,882	-		PFLU_RS14910	0.61	+0.4
3,334,882	-		PFLU_RS14910	0.61	+2.3
3,334,910	-		PFLU_RS14910	0.65	-0.9
3,334,972	+		PFLU_RS14910	0.76	-1.3
3,334,973	-		PFLU_RS14910	0.76	+1.9
3,334,993	-		PFLU_RS14910	0.79	-0.5
3,335,039	+		PFLU_RS14910	0.87	-1.3
3,335,039	+		PFLU_RS14910	0.87	+0.6
3,335,039	+		PFLU_RS14910	0.87	+1.0
3,335,040	-		PFLU_RS14910	0.87	-0.1
3,335,040	-		PFLU_RS14910	0.87	+0.2
3,335,076	+				-0.7
3,335,076	+				+0.0
3,335,076	+				+1.2
3,335,076	+				-0.5
3,335,076	+				+0.5
3,335,076	+				-1.8
3,335,076	+				+0.2
3,335,077	-				-0.5
3,335,077	-				-1.3
3,335,139	+				-0.8
3,335,140	-				+0.6
3,335,140	-				-0.4
3,335,186	+				-1.1
3,335,222	+				-1.3
3,335,222	+				+0.3
3,335,222	+				-1.0
3,335,223	-				-0.3
3,335,223	-				+0.2
3,335,223	-				+1.6
3,335,226	+				+0.8
3,335,226	+				+0.7
3,335,226	+				+0.0
3,335,226	+				-1.8
3,335,226	+				-0.4
3,335,226	+				+0.3
3,335,226	+				-0.5
3,335,226	+				+2.3
3,335,226	+				+1.0
3,335,226	+				-1.0
3,335,226	+				-1.0
3,335,227	-				-0.5
3,335,227	-				+0.0
3,335,227	-				-1.4
3,335,227	-				+1.0
3,335,227	-				-1.8
3,335,227	-				+0.7
3,335,227	-				+0.6
3,335,227	-				-0.1
3,335,227	-				+1.2
3,335,227	-				-0.7
3,335,227	-				+2.2
3,335,227	-				+0.0
3,335,230	+				-2.5
3,335,230	+				+0.4
3,335,230	+				+1.4
3,335,230	+				+1.6
3,335,231	-				+0.9
3,335,231	-				+1.0
3,335,231	-				+0.8
3,335,231	-				+0.2
3,335,231	-				+0.0
3,335,232	+				+0.2
3,335,232	+				-0.5
3,335,233	-				-0.5
3,335,233	-				-1.2
3,335,233	-				+0.7
3,335,245	+				+1.0
3,335,246	-				-1.5
3,335,246	-				-1.0
3,335,246	-				+2.6
3,335,321	+				+0.2
3,335,322	-				+1.0
3,335,322	-				+0.0
3,335,448	+		PFLU_RS14915	0.18	+0.6
3,335,448	+		PFLU_RS14915	0.18	-1.3
3,335,448	+		PFLU_RS14915	0.18	-1.5
3,335,448	+		PFLU_RS14915	0.18	-0.5
3,335,448	+		PFLU_RS14915	0.18	-1.3
3,335,448	+		PFLU_RS14915	0.18	-1.5
3,335,448	+		PFLU_RS14915	0.18	+0.0
3,335,448	+		PFLU_RS14915	0.18	+2.0
3,335,448	+		PFLU_RS14915	0.18	-1.3
3,335,448	+		PFLU_RS14915	0.18	+0.0
3,335,448	+		PFLU_RS14915	0.18	+1.0
3,335,448	+		PFLU_RS14915	0.18	+0.3
3,335,448	+		PFLU_RS14915	0.18	-0.5
3,335,448	+		PFLU_RS14915	0.18	+0.0
3,335,449	-		PFLU_RS14915	0.18	-1.7
3,335,449	-		PFLU_RS14915	0.18	-1.0
3,335,449	-		PFLU_RS14915	0.18	-2.5
3,335,452	+		PFLU_RS14915	0.18	-1.5
3,335,452	+		PFLU_RS14915	0.18	-0.2
3,335,452	+		PFLU_RS14915	0.18	-0.3
3,335,452	+		PFLU_RS14915	0.18	+0.7
3,335,453	-		PFLU_RS14915	0.18	+1.0
3,335,453	-		PFLU_RS14915	0.18	+0.9
3,335,453	-		PFLU_RS14915	0.18	+0.8
3,335,480	+		PFLU_RS14915	0.21	+0.5
3,335,481	-		PFLU_RS14915	0.22	+1.0
3,335,486	-		PFLU_RS14915	0.22	+0.0
3,335,486	-		PFLU_RS14915	0.22	-1.3
3,335,498	+		PFLU_RS14915	0.23	-0.7
3,335,498	+		PFLU_RS14915	0.23	+0.5
3,335,498	+		PFLU_RS14915	0.23	-1.0
3,335,498	+		PFLU_RS14915	0.23	+0.5
3,335,499	-		PFLU_RS14915	0.24	-1.3
3,335,499	-		PFLU_RS14915	0.24	-0.0
3,335,499	-		PFLU_RS14915	0.24	+1.0
3,335,499	-		PFLU_RS14915	0.24	+1.2
3,335,506	+		PFLU_RS14915	0.24	-0.2
3,335,507	-		PFLU_RS14915	0.25	+0.6
3,335,507	-		PFLU_RS14915	0.25	+0.5
3,335,510	+		PFLU_RS14915	0.25	-0.7
3,335,510	+		PFLU_RS14915	0.25	+2.0
3,335,510	+		PFLU_RS14915	0.25	-2.8
3,335,510	+		PFLU_RS14915	0.25	+2.2
3,335,511	-		PFLU_RS14915	0.25	-1.5
3,335,511	-		PFLU_RS14915	0.25	+1.0
3,335,511	-		PFLU_RS14915	0.25	+0.6
3,335,560	+		PFLU_RS14915	0.31	+0.3
3,335,560	+		PFLU_RS14915	0.31	+0.0
3,335,560	+		PFLU_RS14915	0.31	+2.0
3,335,560	+		PFLU_RS14915	0.31	-1.1
3,335,560	+		PFLU_RS14915	0.31	-1.0
3,335,560	+		PFLU_RS14915	0.31	-1.3
3,335,561	-		PFLU_RS14915	0.31	+1.5
3,335,561	-		PFLU_RS14915	0.31	+0.0
3,335,561	-		PFLU_RS14915	0.31	-0.8
3,335,561	-		PFLU_RS14915	0.31	-1.4
3,335,561	-		PFLU_RS14915	0.31	-0.5
3,335,623	+		PFLU_RS14915	0.38	+1.6
3,335,623	+		PFLU_RS14915	0.38	+1.4
3,335,624	-		PFLU_RS14915	0.38	+1.3
3,335,661	+		PFLU_RS14915	0.42	+0.0
3,335,679	+		PFLU_RS14915	0.44	+0.0
3,335,679	+		PFLU_RS14915	0.44	+0.6
3,335,728	+		PFLU_RS14915	0.50	-0.4
3,335,729	-		PFLU_RS14915	0.50	+0.5
3,335,729	-		PFLU_RS14915	0.50	+1.0
3,335,729	-		PFLU_RS14915	0.50	-2.1
3,335,778	+		PFLU_RS14915	0.56	+0.8
3,335,778	+		PFLU_RS14915	0.56	-1.5
3,335,778	+		PFLU_RS14915	0.56	+0.5
3,335,778	+		PFLU_RS14915	0.56	+2.6
3,335,779	-		PFLU_RS14915	0.56	-2.0
3,335,779	-		PFLU_RS14915	0.56	-2.3
3,335,785	-		PFLU_RS14915	0.56	-0.4
3,335,785	-		PFLU_RS14915	0.56	+0.5
3,335,818	+		PFLU_RS14915	0.60	+3.0
3,335,818	+		PFLU_RS14915	0.60	-1.8
3,335,839	+		PFLU_RS14915	0.63	-1.9
3,335,839	+		PFLU_RS14915	0.63	-1.1
3,335,840	-		PFLU_RS14915	0.63	-1.8
3,335,852	+		PFLU_RS14915	0.64	+0.0
3,336,033	-		PFLU_RS14915	0.85	+0.5
3,336,058	+		PFLU_RS14915	0.88	+0.3
3,336,059	-		PFLU_RS14915	0.88	-2.1
3,336,132	+				+0.5
3,336,160	+				+0.0
3,336,160	+				-0.3
3,336,163	+				-1.5
3,336,163	+				-0.3
3,336,164	-				-0.1
3,336,164	-				-2.4
3,336,164	-				+1.1
3,336,215	+				-0.1
3,336,216	-				-0.5
3,336,216	-				+0.4
3,336,312	+				+0.0
3,336,312	+				+1.0
3,336,335	+				+1.0
3,336,353	+				-1.3
3,336,354	-				+1.6
3,336,354	-				+0.5
3,336,396	+		PFLU_RS31635	0.12	+1.6
3,336,397	-		PFLU_RS31635	0.13	-0.8
3,336,397	-		PFLU_RS31635	0.13	-0.3
3,336,448	+		PFLU_RS31635	0.46	+0.0
3,336,449	-		PFLU_RS31635	0.46	-2.1
3,336,501	+		PFLU_RS31635	0.79	-0.5
3,336,502	-		PFLU_RS31635	0.80	-1.0
3,336,502	-		PFLU_RS31635	0.80	-0.5
3,336,619	+				-1.5
3,336,620	-				+0.6
3,336,620	-				-1.0
3,336,620	-				-0.5
3,336,620	-				+0.8
3,336,626	+				-1.0
3,336,626	+				-0.5
3,336,626	+				-0.4
3,336,626	+				+3.0
3,336,626	+				+0.8
3,336,627	-				-0.3
3,336,627	-				+2.0
3,336,627	-				-1.3
3,336,627	-				-0.9
3,336,627	-				+2.0
3,336,627	-				+0.2
3,336,768	+		PFLU_RS30835	0.51	-0.8
3,336,768	+		PFLU_RS30835	0.51	+0.0
3,336,768	+		PFLU_RS30835	0.51	-0.5
3,336,768	+		PFLU_RS30835	0.51	+1.0
3,336,768	+		PFLU_RS30835	0.51	+0.3
3,336,768	+		PFLU_RS30835	0.51	+0.5
3,336,768	+		PFLU_RS30835	0.51	+1.3
3,336,768	+		PFLU_RS30835	0.51	-2.1
3,336,769	-		PFLU_RS30835	0.51	-1.8
3,336,769	-		PFLU_RS30835	0.51	-1.0
3,336,769	-		PFLU_RS30835	0.51	-1.5
3,336,769	-		PFLU_RS30835	0.51	+1.3
3,336,769	-		PFLU_RS30835	0.51	-1.5
3,336,769	-		PFLU_RS30835	0.51	+0.1
3,336,769	-		PFLU_RS30835	0.51	-2.1
3,336,772	+		PFLU_RS30835	0.52	-1.0
3,336,773	-		PFLU_RS30835	0.52	+0.5
3,336,773	-		PFLU_RS30835	0.52	-1.0
3,336,787	-		PFLU_RS30835	0.57	-2.1
3,336,787	-		PFLU_RS30835	0.57	-0.1
3,336,787	-		PFLU_RS30835	0.57	-0.2
3,336,787	-		PFLU_RS30835	0.57	-1.0
3,336,835	-		PFLU_RS30835	0.74	-2.3
3,336,848	+		PFLU_RS30835	0.79	+0.7
3,336,848	+		PFLU_RS30835	0.79	+0.5
3,336,848	+		PFLU_RS30835	0.79	+1.8
3,336,848	+		PFLU_RS30835	0.79	-2.1
3,336,848	+		PFLU_RS30835	0.79	+1.2
3,336,848	+		PFLU_RS30835	0.79	-0.8
3,336,848	+		PFLU_RS30835	0.79	-0.8
3,336,848	+		PFLU_RS30835	0.79	-0.1
3,336,849	-		PFLU_RS30835	0.79	+1.0
3,336,866	+		PFLU_RS30835	0.85	-0.7
3,336,877	+		PFLU_RS30835	0.89	+0.6
3,336,926	+				-0.4
3,336,964	-				+1.8
3,336,964	-				-1.5
3,336,999	+				-2.8
3,336,999	+				+1.6
3,337,004	-				-1.0
3,337,004	-				+1.6
3,337,004	-				+0.5
3,337,004	-				-0.3
3,337,007	+				-1.0
3,337,007	+				+1.0
3,337,007	+				-0.5
3,337,007	+				-0.1
3,337,007	+				+0.4
3,337,007	+				-0.2
3,337,008	-				-1.0
3,337,008	-				-0.5
3,337,008	-				+2.3
3,337,008	-				-0.1
3,337,008	-				+2.6
3,337,008	-				-0.5
3,337,064	-				-0.5