Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14510

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
3,246,877	+		PFLU_RS14505	0.18	+0.8
3,246,877	+		PFLU_RS14505	0.18	+0.7
3,246,877	+		PFLU_RS14505	0.18	+0.4
3,246,878	-		PFLU_RS14505	0.18	+0.9
3,247,207	+		PFLU_RS14505	0.49	+0.0
3,247,207	+		PFLU_RS14505	0.49	+1.6
3,247,207	+		PFLU_RS14505	0.49	-1.0
3,247,208	-		PFLU_RS14505	0.49	-0.5
3,247,208	-		PFLU_RS14505	0.49	+0.4
3,247,208	-		PFLU_RS14505	0.49	-1.8
3,247,208	-		PFLU_RS14505	0.49	-0.3
3,247,282	+		PFLU_RS14505	0.57	-0.5
3,247,282	+		PFLU_RS14505	0.57	-1.0
3,247,283	-		PFLU_RS14505	0.57	+0.1
3,247,283	-		PFLU_RS14505	0.57	+0.0
3,247,283	-		PFLU_RS14505	0.57	+1.0
3,247,326	+		PFLU_RS14505	0.61	+1.0
3,247,326	+		PFLU_RS14505	0.61	+0.9
3,247,327	-		PFLU_RS14505	0.61	+0.5
3,247,327	-		PFLU_RS14505	0.61	+0.9
3,247,327	-		PFLU_RS14505	0.61	-0.5
3,247,327	-		PFLU_RS14505	0.61	-0.9
3,247,355	-		PFLU_RS14505	0.64	+1.0
3,247,355	-		PFLU_RS14505	0.64	+0.6
3,247,469	+		PFLU_RS14505	0.74	+0.7
3,247,639	+				+2.6
3,247,639	+				+0.5
3,247,640	-				-1.3
3,247,663	+				+0.5
3,247,730	+				+1.3
3,247,768	+				-1.0
3,247,768	+				+0.4
3,247,768	+				+0.5
3,247,768	+				-2.2
3,247,768	+				+0.3
3,247,768	+				-2.1
3,247,769	-				+1.0
3,247,769	-				-2.3
3,247,769	-				+0.2
3,247,769	-				+0.0
3,248,089	+		PFLU_RS14510	0.42	-1.3
3,248,089	+		PFLU_RS14510	0.42	+0.2
3,248,090	-		PFLU_RS14510	0.42	-2.0
3,248,222	-		PFLU_RS14510	0.62	-2.7
3,248,271	+		PFLU_RS14510	0.69	-0.2
3,248,272	-		PFLU_RS14510	0.69	+0.3
3,248,272	-		PFLU_RS14510	0.69	+0.5
3,248,272	-		PFLU_RS14510	0.69	-2.0
3,248,272	-		PFLU_RS14510	0.69	-0.5
3,248,272	-		PFLU_RS14510	0.69	-0.9
3,248,285	+		PFLU_RS14510	0.71	-1.7
3,248,285	+		PFLU_RS14510	0.71	-0.2
3,248,285	+		PFLU_RS14510	0.71	-1.3
3,248,285	+		PFLU_RS14510	0.71	+0.4
3,248,286	-		PFLU_RS14510	0.71	+2.6
3,248,286	-		PFLU_RS14510	0.71	+0.4
3,248,286	-		PFLU_RS14510	0.71	+0.5
3,248,286	-		PFLU_RS14510	0.71	+0.0
3,248,286	-		PFLU_RS14510	0.71	+0.3
3,248,286	-		PFLU_RS14510	0.71	+1.8
3,248,286	-		PFLU_RS14510	0.71	+2.0
3,248,286	-		PFLU_RS14510	0.71	+0.8
3,248,286	-		PFLU_RS14510	0.71	-1.0
3,248,286	-		PFLU_RS14510	0.71	+0.7
3,248,343	+		PFLU_RS14510	0.80	-0.2
3,248,343	+		PFLU_RS14510	0.80	+0.3
3,248,343	+		PFLU_RS14510	0.80	+0.6
3,248,381	-		PFLU_RS14510	0.85	-0.1
3,248,395	+		PFLU_RS14510	0.88	+0.0
3,248,395	+		PFLU_RS14510	0.88	-1.0
3,248,395	+		PFLU_RS14510	0.88	-1.5
3,248,395	+		PFLU_RS14510	0.88	-0.1
3,248,395	+		PFLU_RS14510	0.88	+0.5
3,248,395	+		PFLU_RS14510	0.88	-0.4
3,248,396	-		PFLU_RS14510	0.88	-0.3
3,248,396	-		PFLU_RS14510	0.88	-0.3
3,248,396	-		PFLU_RS14510	0.88	+0.8
3,248,396	-		PFLU_RS14510	0.88	+0.6
3,248,396	-		PFLU_RS14510	0.88	-2.0
3,248,483	+				+1.3
3,248,483	+				+1.0
3,248,483	+				-0.2
3,248,483	+				-0.4
3,248,484	-				+0.5
3,248,484	-				+0.3
3,248,618	+				-0.5
3,248,618	+				-1.8
3,248,618	+				+1.0
3,248,618	+				+0.3
3,248,618	+				+0.7
3,248,619	-				-1.1
3,248,619	-				+0.5
3,248,619	-				-2.7
3,248,630	+				+0.4
3,248,630	+				+0.3
3,248,630	+				-1.5
3,248,630	+				-0.4
3,248,631	-				-0.5
3,248,631	-				+1.5
3,248,631	-				+0.5
3,248,631	-				+1.0
3,248,631	-				+0.6
3,248,631	-				-1.3
3,248,653	+				-0.5
3,248,653	+				+0.9
3,248,654	-				+0.6
3,248,654	-				-1.1
3,248,654	-				-2.3
3,248,694	-				-2.1
3,248,694	-				+0.3
3,248,842	+		PFLU_RS14515	0.56	-2.0
3,248,842	+		PFLU_RS14515	0.56	-0.3
3,248,842	+		PFLU_RS14515	0.56	-0.5
3,248,842	+		PFLU_RS14515	0.56	+1.8
3,248,843	-		PFLU_RS14515	0.56	-0.3
3,248,843	-		PFLU_RS14515	0.56	-1.1
3,248,843	-		PFLU_RS14515	0.56	-1.3
3,248,900	+		PFLU_RS14515	0.75	-0.5
3,248,901	-		PFLU_RS14515	0.75	+0.7
3,248,901	-		PFLU_RS14515	0.75	+2.5
3,248,901	-		PFLU_RS14515	0.75	-0.3
3,248,903	+		PFLU_RS14515	0.76	+0.7
3,248,903	+		PFLU_RS14515	0.76	+1.5
3,248,903	+		PFLU_RS14515	0.76	+0.0
3,248,903	+		PFLU_RS14515	0.76	+1.5
3,248,903	+		PFLU_RS14515	0.76	+0.8
3,248,903	+		PFLU_RS14515	0.76	-2.1
3,248,903	+		PFLU_RS14515	0.76	-1.3
3,248,903	+		PFLU_RS14515	0.76	-0.4
3,248,903	+		PFLU_RS14515	0.76	+0.9
3,248,904	-		PFLU_RS14515	0.76	-0.3
3,248,904	-		PFLU_RS14515	0.76	-0.5
3,248,904	-		PFLU_RS14515	0.76	-1.5
3,248,904	-		PFLU_RS14515	0.76	-0.5
3,248,904	-		PFLU_RS14515	0.76	+2.0
3,248,904	-		PFLU_RS14515	0.76	+0.5
3,248,904	-		PFLU_RS14515	0.76	-2.0
3,248,904	-		PFLU_RS14515	0.76	-0.0
3,248,904	-		PFLU_RS14515	0.76	+0.2
3,248,904	-		PFLU_RS14515	0.76	-0.8
3,248,904	-		PFLU_RS14515	0.76	+1.7
3,248,904	-		PFLU_RS14515	0.76	-1.5
3,249,019	+				+0.0
3,249,019	+				+0.6
3,249,020	-				-1.0
3,249,020	-				+1.0
3,249,023	+				-0.8
3,249,023	+				-0.5
3,249,023	+				-0.4
3,249,023	+				-0.4
3,249,024	-				-0.2
3,249,024	-				+0.1
3,249,024	-				-1.5
3,249,024	-				-1.4
3,249,040	+				+0.2
3,249,040	+				-0.1
3,249,059	-				+0.0
3,249,101	+				+0.5
3,249,102	-				+1.0
3,249,102	-				-1.5
3,249,113	+				-2.3
3,249,122	+				+0.8
3,249,122	+				+0.1
3,249,123	-				-0.3
3,249,123	-				+0.8
3,249,130	-				-2.3
3,249,130	-				+0.7
3,249,130	-				-0.5
3,249,130	-				+0.0
3,249,148	+				+0.5
3,249,148	+				+0.6
3,249,148	+				+1.9
3,249,149	-				-1.0
3,249,165	+				+0.0
3,249,165	+				-1.0
3,249,165	+				+1.0
3,249,166	-				+0.8
3,249,166	-				+2.0
3,249,186	+				+1.0
3,249,186	+				-1.4
3,249,186	+				+1.0
3,249,186	+				-0.7
3,249,186	+				+1.3
3,249,186	+				-0.3
3,249,186	+				-0.5
3,249,187	-				-2.4
3,249,187	-				-0.3
3,249,187	-				+0.0
3,249,187	-				+1.2
3,249,187	-				-1.3
3,249,187	-				+0.2
3,249,187	-				+0.3
3,249,187	-				-0.5
3,249,188	+				-0.5
3,249,189	-				+1.0
3,249,189	-				+0.0
3,249,189	-				-2.3
3,249,189	-				-1.3
3,249,189	-				+2.0
3,249,248	+		PFLU_RS14520	0.17	+0.0
3,249,248	+		PFLU_RS14520	0.17	+0.0
3,249,248	+		PFLU_RS14520	0.17	+0.5
3,249,249	-		PFLU_RS14520	0.17	-0.4
3,249,249	-		PFLU_RS14520	0.17	-0.5
3,249,249	-		PFLU_RS14520	0.17	+0.6
3,249,249	-		PFLU_RS14520	0.17	-0.3
3,249,320	-		PFLU_RS14520	0.37	+0.2
3,249,366	-		PFLU_RS14520	0.50	+1.0
3,249,468	+		PFLU_RS14520	0.79	+0.8
3,249,469	-		PFLU_RS14520	0.79	+0.0
3,249,469	-		PFLU_RS14520	0.79	+1.0