Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14055

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
3,146,428	+		PFLU_RS14040	0.83	-0.7
3,146,428	+		PFLU_RS14040	0.83	-0.2
3,146,428	+		PFLU_RS14040	0.83	-0.5
3,146,428	+		PFLU_RS14040	0.83	-0.3
3,146,428	+		PFLU_RS14040	0.83	-0.3
3,146,429	-		PFLU_RS14040	0.83	+1.2
3,146,429	-		PFLU_RS14040	0.83	+0.6
3,146,429	-		PFLU_RS14040	0.83	-0.5
3,146,429	-		PFLU_RS14040	0.83	+0.1
3,146,518	+				-0.4
3,146,536	+				+0.8
3,146,547	+				-0.8
3,146,548	-				+2.1
3,146,548	-				-1.7
3,146,556	+				+0.5
3,146,557	-				+0.1
3,146,571	+				+0.7
3,146,641	+		PFLU_RS14045	0.26	+1.2
3,146,815	+		PFLU_RS14045	0.72	+1.6
3,146,816	-		PFLU_RS14045	0.72	-0.3
3,146,884	+		PFLU_RS14045	0.90	-1.2
3,146,884	+		PFLU_RS14045	0.90	+0.4
3,146,885	-				+0.4
3,146,885	-				+1.5
3,146,896	+				+1.4
3,146,896	+				-0.3
3,146,896	+				-0.1
3,146,896	+				-0.5
3,146,896	+				+0.1
3,146,896	+				+1.1
3,146,897	-				+0.3
3,146,897	-				-0.2
3,146,897	-				-1.5
3,146,897	-				-0.5
3,146,897	-				+2.4
3,146,897	-				-0.2
3,146,897	-				-1.9
3,146,897	-				+1.1
3,146,943	+				+1.7
3,146,944	-				-0.7
3,146,944	-				-1.9
3,146,944	-				+1.7
3,146,944	-				+0.4
3,146,944	-				+0.9
3,147,109	-		PFLU_RS14050	0.56	-1.9
3,147,118	+		PFLU_RS14050	0.59	-1.1
3,147,119	-		PFLU_RS14050	0.59	-1.7
3,147,254	+				+1.1
3,147,254	+				+0.1
3,147,254	+				-2.5
3,147,254	+				-0.9
3,147,254	+				+0.4
3,147,255	-				-1.6
3,147,255	-				-0.3
3,147,255	-				-1.0
3,147,255	-				+0.9
3,147,255	-				-1.1
3,147,255	-				+0.8
3,147,255	-				+1.3
3,147,496	-				-1.3
3,147,699	+		PFLU_RS14055	0.14	-1.3
3,147,699	+		PFLU_RS14055	0.14	-0.1
3,147,699	+		PFLU_RS14055	0.14	-0.6
3,147,700	-		PFLU_RS14055	0.14	-1.7
3,147,732	+		PFLU_RS14055	0.15	-2.4
3,147,733	-		PFLU_RS14055	0.15	+0.7
3,147,903	-		PFLU_RS14055	0.21	+1.1
3,147,967	-		PFLU_RS14055	0.23	+1.6
3,147,969	+		PFLU_RS14055	0.23	+0.6
3,147,969	+		PFLU_RS14055	0.23	+1.2
3,147,969	+		PFLU_RS14055	0.23	+1.1
3,147,969	+		PFLU_RS14055	0.23	+1.2
3,147,969	+		PFLU_RS14055	0.23	-1.7
3,147,970	-		PFLU_RS14055	0.23	-2.1
3,147,970	-		PFLU_RS14055	0.23	-1.9
3,147,970	-		PFLU_RS14055	0.23	-1.3
3,147,970	-		PFLU_RS14055	0.23	+0.6
3,147,970	-		PFLU_RS14055	0.23	+1.1
3,147,970	-		PFLU_RS14055	0.23	-1.3
3,147,996	+		PFLU_RS14055	0.24	-0.5
3,147,996	+		PFLU_RS14055	0.24	+1.1
3,147,997	-		PFLU_RS14055	0.24	-0.9
3,147,997	-		PFLU_RS14055	0.24	-0.9
3,147,997	-		PFLU_RS14055	0.24	+2.3
3,147,997	-		PFLU_RS14055	0.24	+0.1
3,147,998	+		PFLU_RS14055	0.24	+0.1
3,147,999	-		PFLU_RS14055	0.24	+1.1
3,148,026	+		PFLU_RS14055	0.25	-1.9
3,148,027	-		PFLU_RS14055	0.25	+0.1
3,148,027	-		PFLU_RS14055	0.25	-0.2
3,148,027	-		PFLU_RS14055	0.25	+1.2
3,148,157	+		PFLU_RS14055	0.29	+0.5
3,148,210	+		PFLU_RS14055	0.31	+0.4
3,148,284	+		PFLU_RS14055	0.33	+1.9
3,148,285	-		PFLU_RS14055	0.33	+1.4
3,148,285	-		PFLU_RS14055	0.33	-0.3
3,148,285	-		PFLU_RS14055	0.33	+0.6
3,148,290	+		PFLU_RS14055	0.33	-0.1
3,148,291	-		PFLU_RS14055	0.33	+3.1
3,148,291	-		PFLU_RS14055	0.33	+2.7
3,148,291	-		PFLU_RS14055	0.33	-0.3
3,148,291	-		PFLU_RS14055	0.33	-0.1
3,148,291	-		PFLU_RS14055	0.33	-0.5
3,148,378	-		PFLU_RS14055	0.36	-0.9
3,148,444	-		PFLU_RS14055	0.38	+0.1
3,148,770	+		PFLU_RS14055	0.49	+0.4
3,148,770	+		PFLU_RS14055	0.49	-2.7
3,148,770	+		PFLU_RS14055	0.49	+1.4
3,148,771	-		PFLU_RS14055	0.49	+0.3
3,148,771	-		PFLU_RS14055	0.49	+0.1
3,148,771	-		PFLU_RS14055	0.49	+1.3
3,148,772	+		PFLU_RS14055	0.49	-2.3
3,148,772	+		PFLU_RS14055	0.49	-1.2
3,148,773	-		PFLU_RS14055	0.49	-1.5
3,148,773	-		PFLU_RS14055	0.49	-0.5
3,148,773	-		PFLU_RS14055	0.49	+0.1
3,148,773	-		PFLU_RS14055	0.49	+0.6
3,148,773	-		PFLU_RS14055	0.49	-0.3
3,148,773	-		PFLU_RS14055	0.49	+0.2
3,148,956	+		PFLU_RS14055	0.55	-0.7
3,148,956	+		PFLU_RS14055	0.55	-0.9
3,148,957	-		PFLU_RS14055	0.55	+0.1
3,148,957	-		PFLU_RS14055	0.55	-0.2
3,149,019	+		PFLU_RS14055	0.57	-1.4
3,149,019	+		PFLU_RS14055	0.57	+1.1
3,149,019	+		PFLU_RS14055	0.57	+0.6
3,149,020	-		PFLU_RS14055	0.57	-0.1
3,149,020	-		PFLU_RS14055	0.57	+0.4
3,149,020	-		PFLU_RS14055	0.57	+0.3
3,149,076	+		PFLU_RS14055	0.59	-3.2
3,149,076	+		PFLU_RS14055	0.59	+0.3
3,149,076	+		PFLU_RS14055	0.59	-1.5
3,149,076	+		PFLU_RS14055	0.59	+0.4
3,149,076	+		PFLU_RS14055	0.59	-1.1
3,149,076	+		PFLU_RS14055	0.59	-0.9
3,149,076	+		PFLU_RS14055	0.59	+1.5
3,149,077	-		PFLU_RS14055	0.59	+0.3
3,149,077	-		PFLU_RS14055	0.59	+0.7
3,149,077	-		PFLU_RS14055	0.59	-0.4
3,149,222	-		PFLU_RS14055	0.64	-0.5
3,149,277	+		PFLU_RS14055	0.66	-0.7
3,149,277	+		PFLU_RS14055	0.66	+1.2
3,149,277	+		PFLU_RS14055	0.66	-2.1
3,149,277	+		PFLU_RS14055	0.66	+0.7
3,149,278	-		PFLU_RS14055	0.66	-1.0
3,149,278	-		PFLU_RS14055	0.66	-0.7
3,149,538	+		PFLU_RS14055	0.74	-1.5
3,149,538	+		PFLU_RS14055	0.74	-0.5
3,149,539	-		PFLU_RS14055	0.74	+1.1
3,149,601	+		PFLU_RS14055	0.76	+0.2
3,149,601	+		PFLU_RS14055	0.76	-0.7
3,149,601	+		PFLU_RS14055	0.76	+1.9
3,149,602	-		PFLU_RS14055	0.76	-2.5
3,149,602	-		PFLU_RS14055	0.76	+0.4
3,149,602	-		PFLU_RS14055	0.76	+1.8
3,149,602	-		PFLU_RS14055	0.76	+0.1
3,149,602	-		PFLU_RS14055	0.76	+0.3
3,149,919	+		PFLU_RS14055	0.87	-0.9
3,149,919	+		PFLU_RS14055	0.87	+0.7
3,149,920	-		PFLU_RS14055	0.87	-0.3
3,149,920	-		PFLU_RS14055	0.87	-0.4
3,149,920	-		PFLU_RS14055	0.87	+0.1
3,149,920	-		PFLU_RS14055	0.87	+0.7
3,149,920	-		PFLU_RS14055	0.87	-0.2
3,149,920	-		PFLU_RS14055	0.87	-0.7
3,149,920	-		PFLU_RS14055	0.87	-0.1
3,150,048	-				+1.6
3,150,089	+				+1.1
3,150,256	-				-0.7
3,150,256	-				-2.1
3,150,256	-				+1.1
3,150,256	-				-1.3
3,150,256	-				+0.1
3,150,414	-		PFLU_RS14060	0.27	-0.3
3,150,575	+		PFLU_RS14060	0.74	-2.4
3,150,575	+		PFLU_RS14060	0.74	+1.1
3,150,575	+		PFLU_RS14060	0.74	+1.7
3,150,576	-		PFLU_RS14060	0.75	+0.7
3,150,576	-		PFLU_RS14060	0.75	-0.4
3,150,590	+		PFLU_RS14060	0.79	+0.7
3,150,590	+		PFLU_RS14060	0.79	+0.7
3,150,590	+		PFLU_RS14060	0.79	-0.9
3,150,590	+		PFLU_RS14060	0.79	-1.7
3,150,591	-		PFLU_RS14060	0.79	+1.1
3,150,591	-		PFLU_RS14060	0.79	+0.1
3,150,591	-		PFLU_RS14060	0.79	+0.2
3,150,591	-		PFLU_RS14060	0.79	-1.6
3,150,591	-		PFLU_RS14060	0.79	-0.5
3,150,620	+		PFLU_RS14060	0.88	-0.3
3,150,620	+		PFLU_RS14060	0.88	+0.8
3,150,621	-		PFLU_RS14060	0.88	-1.7
3,150,680	+				+3.1
3,150,680	+				+2.1
3,150,681	-				-1.1
3,150,681	-				+0.1
3,150,681	-				-1.1
3,150,747	+				-0.6
3,150,748	-		PFLU_RS14065	0.10	-1.3
3,150,760	-		PFLU_RS14065	0.12	-2.7
3,150,760	-		PFLU_RS14065	0.12	+0.6
3,150,813	+		PFLU_RS14065	0.19	-0.4
3,150,813	+		PFLU_RS14065	0.19	+0.7
3,150,813	+		PFLU_RS14065	0.19	+2.3
3,150,814	-		PFLU_RS14065	0.19	-0.5
3,150,814	-		PFLU_RS14065	0.19	+0.1
3,150,814	-		PFLU_RS14065	0.19	+1.3
3,150,814	-		PFLU_RS14065	0.19	-1.3
3,150,870	+		PFLU_RS14065	0.26	+0.1
3,150,870	+		PFLU_RS14065	0.26	+1.3
3,150,871	-		PFLU_RS14065	0.26	-0.7
3,150,871	-		PFLU_RS14065	0.26	-1.6
3,151,001	+		PFLU_RS14065	0.44	+1.5
3,151,001	+		PFLU_RS14065	0.44	+0.7
3,151,001	+		PFLU_RS14065	0.44	+1.2
3,151,001	+		PFLU_RS14065	0.44	+0.1
3,151,001	+		PFLU_RS14065	0.44	-0.6
3,151,001	+		PFLU_RS14065	0.44	-0.1
3,151,001	+		PFLU_RS14065	0.44	+1.1
3,151,001	+		PFLU_RS14065	0.44	+1.4
3,151,002	-		PFLU_RS14065	0.44	+0.3
3,151,002	-		PFLU_RS14065	0.44	-0.6
3,151,002	-		PFLU_RS14065	0.44	+0.9
3,151,002	-		PFLU_RS14065	0.44	-0.5
3,151,002	-		PFLU_RS14065	0.44	-1.5
3,151,002	-		PFLU_RS14065	0.44	+0.1
3,151,002	-		PFLU_RS14065	0.44	-1.5
3,151,002	-		PFLU_RS14065	0.44	-1.1
3,151,038	+		PFLU_RS14065	0.49	+0.2
3,151,039	-		PFLU_RS14065	0.49	+0.1
3,151,110	+		PFLU_RS14065	0.58	-0.5