Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30720

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
2,707,520	-		PFLU_RS12200	0.44	+0.6
2,707,520	-		PFLU_RS12200	0.44	-1.3
2,707,560	+		PFLU_RS12200	0.54	-0.6
2,707,561	-		PFLU_RS12200	0.54	-1.7
2,707,561	-		PFLU_RS12200	0.54	+0.1
2,707,578	+		PFLU_RS12200	0.58	+1.7
2,707,618	+		PFLU_RS12200	0.67	+0.1
2,707,618	+		PFLU_RS12200	0.67	-0.6
2,707,619	-		PFLU_RS12200	0.68	-1.1
2,707,620	+		PFLU_RS12200	0.68	+0.7
2,707,620	+		PFLU_RS12200	0.68	+1.6
2,707,620	+		PFLU_RS12200	0.68	-0.3
2,707,620	+		PFLU_RS12200	0.68	-2.0
2,707,620	+		PFLU_RS12200	0.68	+1.1
2,707,620	+		PFLU_RS12200	0.68	+0.8
2,707,620	+		PFLU_RS12200	0.68	+1.1
2,707,620	+		PFLU_RS12200	0.68	+2.2
2,707,621	-		PFLU_RS12200	0.68	-1.6
2,707,621	-		PFLU_RS12200	0.68	-0.3
2,707,621	-		PFLU_RS12200	0.68	+0.1
2,707,621	-		PFLU_RS12200	0.68	-0.0
2,707,621	-		PFLU_RS12200	0.68	+1.1
2,707,621	-		PFLU_RS12200	0.68	-1.7
2,707,621	-		PFLU_RS12200	0.68	-0.6
2,707,674	+		PFLU_RS12200	0.81	+1.3
2,707,729	+				+2.9
2,707,729	+				-0.9
2,707,729	+				-1.7
2,707,730	-				-0.4
2,707,730	-				-2.1
2,707,730	-				+0.1
2,707,754	+				+0.1
2,707,804	+				-1.7
2,707,804	+				-0.3
2,707,805	-				-1.7
2,707,805	-				-0.9
2,707,841	+				-0.1
2,707,842	-				-1.6
2,707,844	-				+1.2
2,707,851	+				-0.9
2,707,852	-				-0.3
2,707,884	+				+1.9
2,707,884	+				+2.3
2,707,894	+				-1.4
2,707,894	+				-0.4
2,707,895	-				+1.0
2,707,905	+				-0.3
2,707,905	+				+1.0
2,707,905	+				+1.5
2,707,905	+				-2.1
2,707,906	-				-1.3
2,707,906	-				+2.5
2,707,906	-				-1.9
2,707,908	+				+2.2
2,707,908	+				-1.3
2,707,908	+				-0.3
2,707,908	+				+2.0
2,707,908	+				-0.6
2,707,908	+				+0.5
2,707,909	-				+0.9
2,707,909	-				-2.1
2,707,912	+				-1.7
2,707,912	+				+0.8
2,707,912	+				-1.9
2,707,913	-				+3.0
2,707,913	-				+2.1
2,707,956	+				+1.5
2,708,177	+		PFLU_RS12205	0.68	-2.5
2,708,178	-		PFLU_RS12205	0.68	-0.4
2,708,178	-		PFLU_RS12205	0.68	-0.6
2,708,179	+		PFLU_RS12205	0.69	-0.9
2,708,180	-		PFLU_RS12205	0.69	-2.0
2,708,180	-		PFLU_RS12205	0.69	-1.0
2,708,291	+				+0.1
2,708,292	-				+0.9
2,708,292	-				+2.4
2,708,292	-				+2.7
2,708,292	-				-2.0
2,708,292	-				-1.4
2,708,292	-				+0.5
2,708,358	+				+1.3
2,708,358	+				+2.0
2,708,358	+				-0.3
2,708,358	+				-0.6
2,708,358	+				-0.9
2,708,358	+				+0.7
2,708,358	+				+2.6
2,708,359	-				+2.9
2,708,359	-				-2.0
2,708,359	-				+2.2
2,708,360	+				+0.8
2,708,360	+				+2.0
2,708,377	+				-0.6
2,708,381	-				-1.6
2,708,414	-				+0.1
2,708,414	-				-1.1
2,708,560	+		PFLU_RS30720	0.16	+5.2
2,708,576	-		PFLU_RS30720	0.17	-0.9
2,708,621	+		PFLU_RS30720	0.22	-0.9
2,708,622	-		PFLU_RS30720	0.22	-0.4
2,708,630	-		PFLU_RS30720	0.23	+3.8
2,708,650	-		PFLU_RS30720	0.25	-1.3
2,708,689	+		PFLU_RS30720	0.29	+0.9
2,708,689	+		PFLU_RS30720	0.29	-1.9
2,708,690	-		PFLU_RS30720	0.29	-0.3
2,708,704	+		PFLU_RS30720	0.31	+0.1
2,708,798	-		PFLU_RS30720	0.40	+1.7
2,708,828	-		PFLU_RS30720	0.43	-1.1
2,708,861	-		PFLU_RS30720	0.47	+0.1
2,708,867	-		PFLU_RS30720	0.47	+0.9
2,708,923	+		PFLU_RS30720	0.53	-1.0
2,708,924	-		PFLU_RS30720	0.53	-1.3
2,708,925	+		PFLU_RS30720	0.53	+0.3
2,708,994	+		PFLU_RS30720	0.61	-0.8
2,708,995	-		PFLU_RS30720	0.61	-1.1
2,709,028	+		PFLU_RS30720	0.64	+2.4
2,709,029	-		PFLU_RS30720	0.64	+2.2
2,709,045	+		PFLU_RS30720	0.66	-1.6
2,709,046	-		PFLU_RS30720	0.66	+0.7
2,709,088	-		PFLU_RS30720	0.70	+1.1
2,709,091	+		PFLU_RS30720	0.71	+0.1
2,709,091	+		PFLU_RS30720	0.71	-1.4
2,709,100	-		PFLU_RS30720	0.72	-2.3
2,709,127	+		PFLU_RS30720	0.74	-0.6
2,709,127	+		PFLU_RS30720	0.74	-1.7
2,709,127	+		PFLU_RS30720	0.74	+0.7
2,709,127	+		PFLU_RS30720	0.74	-0.4
2,709,128	-		PFLU_RS30720	0.75	-1.6
2,709,128	-		PFLU_RS30720	0.75	-3.0
2,709,128	-		PFLU_RS30720	0.75	-2.2
2,709,156	+		PFLU_RS30720	0.77	-2.5
2,709,156	+		PFLU_RS30720	0.77	+2.3
2,709,156	+		PFLU_RS30720	0.77	+0.9
2,709,156	+		PFLU_RS30720	0.77	+0.7
2,709,156	+		PFLU_RS30720	0.77	+1.4
2,709,156	+		PFLU_RS30720	0.77	+2.0
2,709,156	+		PFLU_RS30720	0.77	+0.8
2,709,157	-		PFLU_RS30720	0.78	-1.1
2,709,157	-		PFLU_RS30720	0.78	-1.9
2,709,157	-		PFLU_RS30720	0.78	+3.3
2,709,157	-		PFLU_RS30720	0.78	+3.4
2,709,157	-		PFLU_RS30720	0.78	-1.3
2,709,166	+		PFLU_RS30720	0.79	+0.4
2,709,181	+		PFLU_RS30720	0.80	-1.6
2,709,181	+		PFLU_RS30720	0.80	+0.1
2,709,200	+		PFLU_RS30720	0.82	-0.9
2,709,200	+		PFLU_RS30720	0.82	-2.4
2,709,200	+		PFLU_RS30720	0.82	-1.2
2,709,200	+		PFLU_RS30720	0.82	-2.1
2,709,200	+		PFLU_RS30720	0.82	-2.7
2,709,200	+		PFLU_RS30720	0.82	-1.7
2,709,200	+		PFLU_RS30720	0.82	+0.5
2,709,200	+		PFLU_RS30720	0.82	+0.1
2,709,200	+		PFLU_RS30720	0.82	-2.7
2,709,201	-		PFLU_RS30720	0.82	-1.7
2,709,201	-		PFLU_RS30720	0.82	+1.7
2,709,201	-		PFLU_RS30720	0.82	+0.6
2,709,201	-		PFLU_RS30720	0.82	+1.3
2,709,201	-		PFLU_RS30720	0.82	+1.0
2,709,201	-		PFLU_RS30720	0.82	+0.5
2,709,201	-		PFLU_RS30720	0.82	+0.9
2,709,201	-		PFLU_RS30720	0.82	+0.1
2,709,201	-		PFLU_RS30720	0.82	+0.4
2,709,201	-		PFLU_RS30720	0.82	+1.2
2,709,201	-		PFLU_RS30720	0.82	-0.9
2,709,201	-		PFLU_RS30720	0.82	-0.3
2,709,201	-		PFLU_RS30720	0.82	-0.6
2,709,201	-		PFLU_RS30720	0.82	+0.1
2,709,204	+		PFLU_RS30720	0.82	-0.9
2,709,205	-		PFLU_RS30720	0.83	+0.9
2,709,205	-		PFLU_RS30720	0.83	-1.6
2,709,247	+		PFLU_RS30720	0.87	+1.0
2,709,247	+		PFLU_RS30720	0.87	+0.6
2,709,248	-		PFLU_RS30720	0.87	+0.7
2,709,304	+				+0.3
2,709,304	+				-0.3
2,709,331	-				-2.2
2,709,331	-				+1.4
2,709,364	-				-0.2
2,709,393	+				+0.7
2,709,393	+				+1.0
2,709,393	+				-1.1
2,709,393	+				+0.7
2,709,393	+				-0.6
2,709,393	+				-0.4
2,709,393	+				-1.3
2,709,393	+				-0.3
2,709,393	+				-0.9
2,709,393	+				-0.9
2,709,394	-				+2.7
2,709,394	-				-1.9
2,709,394	-				-1.3
2,709,394	-				+3.3
2,709,394	-				+1.4
2,709,394	-				+0.1
2,709,394	-				-1.4
2,709,394	-				+0.7
2,709,394	-				+0.5
2,709,394	-				+1.7
2,709,394	-				+0.7
2,709,394	-				-2.2
2,709,394	-				-1.9
2,709,394	-				-0.9
2,709,394	-				-0.6
2,709,394	-				-0.3
2,709,394	-				-1.9
2,709,394	-				-1.4
2,709,394	-				-0.3
2,709,394	-				+0.1
2,709,394	-				+2.7
2,709,397	+				+1.7
2,709,397	+				+2.5
2,709,397	+				-2.0
2,709,398	-				+1.4
2,709,468	+				+0.1
2,709,469	-				+1.3
2,709,469	-				+2.3
2,709,469	-				+0.7
2,709,469	-				+1.4
2,709,472	-				-1.4
2,709,556	+				+2.4
2,709,556	+				+0.4
2,709,557	-				-2.7
2,709,557	-				-2.9
2,709,578	+				+0.1
2,709,579	-				+0.8
2,709,699	-				+1.3
2,709,724	+				+0.1
2,709,725	-				+1.9
2,709,753	-		PFLU_RS12210	0.11	+2.7
2,709,813	-		PFLU_RS12210	0.24	-1.1
2,709,898	-		PFLU_RS12210	0.43	-2.4
2,709,899	+		PFLU_RS12210	0.43	-2.3
2,709,959	+		PFLU_RS12210	0.56	+1.4
2,709,983	+		PFLU_RS12210	0.61	+1.7
2,709,983	+		PFLU_RS12210	0.61	+1.5
2,710,071	-		PFLU_RS12210	0.80	-0.3
2,710,139	+				-0.9
2,710,171	+				-2.1
2,710,184	-				+1.5
2,710,267	+				-2.6
2,710,271	+				+0.1
2,710,271	+				+2.6
2,710,326	-				-1.1
2,710,358	+				-0.1
2,710,358	+				+1.3