Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20810

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
4,679,353	+				-1.0
4,679,353	+				-1.2
4,679,354	-				-1.3
4,679,354	-				+1.7
4,679,354	-				-0.8
4,679,471	-		PFLU_RS20805	0.22	+0.0
4,679,493	-		PFLU_RS20805	0.24	-2.0
4,679,671	-		PFLU_RS20805	0.44	-1.6
4,679,671	-		PFLU_RS20805	0.44	+0.0
4,679,698	+		PFLU_RS20805	0.47	-0.6
4,679,699	-		PFLU_RS20805	0.47	-1.1
4,679,754	+		PFLU_RS20805	0.54	+2.5
4,679,755	-		PFLU_RS20805	0.54	-0.8
4,679,807	+		PFLU_RS20805	0.59	+1.5
4,679,848	-		PFLU_RS20805	0.64	+1.0
4,679,919	+		PFLU_RS20805	0.72	+0.2
4,679,919	+		PFLU_RS20805	0.72	+1.5
4,679,919	+		PFLU_RS20805	0.72	-1.7
4,679,919	+		PFLU_RS20805	0.72	-1.2
4,679,919	+		PFLU_RS20805	0.72	+1.1
4,679,919	+		PFLU_RS20805	0.72	-2.8
4,679,919	+		PFLU_RS20805	0.72	+0.7
4,679,919	+		PFLU_RS20805	0.72	+0.8
4,679,920	-		PFLU_RS20805	0.72	-0.1
4,679,920	-		PFLU_RS20805	0.72	-0.8
4,679,920	-		PFLU_RS20805	0.72	+0.9
4,679,920	-		PFLU_RS20805	0.72	+1.0
4,679,920	-		PFLU_RS20805	0.72	-1.2
4,679,920	-		PFLU_RS20805	0.72	-1.0
4,679,937	+		PFLU_RS20805	0.74	-1.2
4,679,938	-		PFLU_RS20805	0.74	-0.6
4,679,959	+		PFLU_RS20805	0.76	+2.2
4,679,959	+		PFLU_RS20805	0.76	-0.0
4,679,960	-		PFLU_RS20805	0.76	+1.0
4,679,960	-		PFLU_RS20805	0.76	-1.5
4,679,960	-		PFLU_RS20805	0.76	-0.0
4,679,960	-		PFLU_RS20805	0.76	+1.1
4,679,974	+		PFLU_RS20805	0.78	+1.0
4,679,974	+		PFLU_RS20805	0.78	+0.9
4,679,974	+		PFLU_RS20805	0.78	+2.0
4,679,975	-		PFLU_RS20805	0.78	+1.1
4,679,975	-		PFLU_RS20805	0.78	+0.9
4,679,975	-		PFLU_RS20805	0.78	+0.4
4,679,975	-		PFLU_RS20805	0.78	+0.4
4,679,975	-		PFLU_RS20805	0.78	+0.4
4,679,975	-		PFLU_RS20805	0.78	+0.3
4,679,975	-		PFLU_RS20805	0.78	-2.4
4,679,975	-		PFLU_RS20805	0.78	-0.0
4,679,978	+		PFLU_RS20805	0.78	+1.1
4,679,978	+		PFLU_RS20805	0.78	-1.9
4,679,978	+		PFLU_RS20805	0.78	+2.4
4,679,978	+		PFLU_RS20805	0.78	+0.3
4,679,978	+		PFLU_RS20805	0.78	-1.5
4,679,978	+		PFLU_RS20805	0.78	+0.6
4,679,978	+		PFLU_RS20805	0.78	+1.7
4,679,979	-		PFLU_RS20805	0.79	-1.6
4,679,979	-		PFLU_RS20805	0.79	-0.8
4,679,979	-		PFLU_RS20805	0.79	-0.6
4,680,043	+		PFLU_RS20805	0.86	-1.9
4,680,043	+		PFLU_RS20805	0.86	-0.6
4,680,043	+		PFLU_RS20805	0.86	-2.5
4,680,043	+		PFLU_RS20805	0.86	-1.2
4,680,044	-		PFLU_RS20805	0.86	+2.8
4,680,044	-		PFLU_RS20805	0.86	-1.4
4,680,044	-		PFLU_RS20805	0.86	-1.3
4,680,044	-		PFLU_RS20805	0.86	-0.5
4,680,044	-		PFLU_RS20805	0.86	+0.6
4,680,146	+				-0.8
4,680,146	+				+0.8
4,680,146	+				-0.6
4,680,146	+				+0.5
4,680,146	+				-2.8
4,680,147	-				+1.0
4,680,147	-				-2.5
4,680,147	-				+0.3
4,680,147	-				-0.3
4,680,147	-				-0.2
4,680,174	+				-1.0
4,680,174	+				+0.7
4,680,174	+				-1.1
4,680,188	+				-1.3
4,680,188	+				-1.0
4,680,188	+				-1.1
4,680,188	+				-1.8
4,680,188	+				+1.3
4,680,189	-				-0.1
4,680,189	-				+2.2
4,680,232	+				+1.2
4,680,233	-				-2.2
4,680,233	-				-1.0
4,680,233	-				+2.4
4,680,233	-				-2.8
4,680,238	-				+1.8
4,680,247	+				+2.1
4,680,268	+				+1.1
4,680,268	+				+2.2
4,680,268	+				-2.0
4,680,269	-				+0.8
4,680,269	-				+0.4
4,680,269	-				-1.2
4,680,269	-				-0.5
4,680,269	-				+4.2
4,680,269	-				+1.3
4,680,269	-				-1.6
4,680,269	-				-2.1
4,680,269	-				-0.6
4,680,271	+				-1.5
4,680,272	-				-0.2
4,680,308	+				-0.3
4,680,308	+				+0.5
4,680,309	-				-2.2
4,680,309	-				-1.0
4,680,309	-				-0.2
4,680,309	-				+2.2
4,680,368	+				-0.8
4,680,368	+				+0.1
4,680,369	-				+4.4
4,680,369	-				-0.0
4,680,369	-				-2.2
4,680,384	-		PFLU_RS20810	0.10	+1.8
4,680,402	+		PFLU_RS20810	0.12	-1.9
4,680,402	+		PFLU_RS20810	0.12	+2.2
4,680,402	+		PFLU_RS20810	0.12	-1.3
4,680,402	+		PFLU_RS20810	0.12	+0.4
4,680,402	+		PFLU_RS20810	0.12	+0.6
4,680,402	+		PFLU_RS20810	0.12	+0.0
4,680,403	-		PFLU_RS20810	0.13	+2.1
4,680,403	-		PFLU_RS20810	0.13	-2.1
4,680,403	-		PFLU_RS20810	0.13	-1.5
4,680,403	-		PFLU_RS20810	0.13	+0.6
4,680,403	-		PFLU_RS20810	0.13	+0.2
4,680,403	-		PFLU_RS20810	0.13	-0.2
4,680,403	-		PFLU_RS20810	0.13	-2.8
4,680,403	-		PFLU_RS20810	0.13	+0.3
4,680,403	-		PFLU_RS20810	0.13	-0.8
4,680,403	-		PFLU_RS20810	0.13	-2.3
4,680,405	-		PFLU_RS20810	0.13	+1.3
4,680,469	+		PFLU_RS20810	0.22	+0.3
4,680,527	-		PFLU_RS20810	0.29	-2.8
4,680,527	-		PFLU_RS20810	0.29	-1.3
4,680,532	+		PFLU_RS20810	0.30	-1.6
4,680,532	+		PFLU_RS20810	0.30	-1.5
4,680,532	+		PFLU_RS20810	0.30	-0.6
4,680,532	+		PFLU_RS20810	0.30	+1.5
4,680,532	+		PFLU_RS20810	0.30	-0.3
4,680,532	+		PFLU_RS20810	0.30	+0.3
4,680,532	+		PFLU_RS20810	0.30	+0.5
4,680,533	-		PFLU_RS20810	0.30	-1.5
4,680,533	-		PFLU_RS20810	0.30	+1.2
4,680,533	-		PFLU_RS20810	0.30	+1.0
4,680,533	-		PFLU_RS20810	0.30	-1.0
4,680,533	-		PFLU_RS20810	0.30	-0.6
4,680,659	+		PFLU_RS20810	0.47	-1.3
4,680,660	-		PFLU_RS20810	0.47	-0.8
4,680,660	-		PFLU_RS20810	0.47	+0.4
4,680,660	-		PFLU_RS20810	0.47	+1.0
4,680,685	+		PFLU_RS20810	0.51	+0.1
4,680,685	+		PFLU_RS20810	0.51	-0.4
4,680,685	+		PFLU_RS20810	0.51	+1.0
4,680,686	-		PFLU_RS20810	0.51	+1.7
4,680,716	+		PFLU_RS20810	0.55	+2.6
4,680,740	+		PFLU_RS20810	0.58	-0.8
4,680,740	+		PFLU_RS20810	0.58	+1.2
4,680,771	+		PFLU_RS20810	0.62	-0.5
4,680,771	+		PFLU_RS20810	0.62	+1.4
4,680,772	-		PFLU_RS20810	0.62	-0.2
4,680,772	-		PFLU_RS20810	0.62	-1.5
4,680,810	+		PFLU_RS20810	0.67	+1.3
4,680,810	+		PFLU_RS20810	0.67	+0.1
4,680,810	+		PFLU_RS20810	0.67	-2.3
4,680,811	-		PFLU_RS20810	0.67	-0.8
4,680,812	+		PFLU_RS20810	0.68	+1.7
4,680,813	-		PFLU_RS20810	0.68	+0.5
4,680,837	+		PFLU_RS20810	0.71	+0.7
4,680,837	+		PFLU_RS20810	0.71	-0.3
4,680,837	+		PFLU_RS20810	0.71	+2.3
4,680,838	-		PFLU_RS20810	0.71	+0.5
4,680,838	-		PFLU_RS20810	0.71	+0.7
4,680,838	-		PFLU_RS20810	0.71	+1.8
4,680,838	-		PFLU_RS20810	0.71	+1.1
4,680,838	-		PFLU_RS20810	0.71	-1.9
4,680,841	+		PFLU_RS20810	0.72	-0.8
4,680,856	+		PFLU_RS20810	0.74	+0.4
4,680,856	+		PFLU_RS20810	0.74	+0.8
4,680,857	-		PFLU_RS20810	0.74	+0.4
4,680,857	-		PFLU_RS20810	0.74	+0.9
4,680,870	-		PFLU_RS20810	0.75	+1.0
4,680,875	+		PFLU_RS20810	0.76	-1.2
4,680,876	-		PFLU_RS20810	0.76	+0.8
4,680,974	+		PFLU_RS20810	0.89	-0.6
4,681,022	+				+0.8
4,681,022	+				-0.8
4,681,023	-				-0.3
4,681,041	+				+0.7
4,681,041	+				+1.5
4,681,056	+				-1.4
4,681,057	-				-0.6
4,681,064	+				-2.3
4,681,065	-				+2.2
4,681,065	-				+1.2
4,681,124	+		PFLU_RS20815	0.13	-1.6
4,681,125	-		PFLU_RS20815	0.14	-2.3
4,681,125	-		PFLU_RS20815	0.14	-2.3
4,681,134	+		PFLU_RS20815	0.16	-1.7
4,681,134	+		PFLU_RS20815	0.16	-2.0
4,681,135	-		PFLU_RS20815	0.16	-0.1
4,681,135	-		PFLU_RS20815	0.16	-0.3
4,681,135	-		PFLU_RS20815	0.16	-1.2
4,681,257	+		PFLU_RS20815	0.47	+0.9
4,681,257	+		PFLU_RS20815	0.47	+0.4
4,681,257	+		PFLU_RS20815	0.47	-0.4
4,681,258	-		PFLU_RS20815	0.47	-2.3
4,681,258	-		PFLU_RS20815	0.47	-1.7
4,681,258	-		PFLU_RS20815	0.47	-0.1
4,681,258	-		PFLU_RS20815	0.47	+2.2
4,681,258	-		PFLU_RS20815	0.47	-2.1
4,681,258	-		PFLU_RS20815	0.47	-0.5
4,681,305	+		PFLU_RS20815	0.58	-1.0
4,681,305	+		PFLU_RS20815	0.58	-0.0
4,681,305	+		PFLU_RS20815	0.58	-0.0
4,681,305	+		PFLU_RS20815	0.58	+0.4
4,681,305	+		PFLU_RS20815	0.58	+0.4
4,681,305	+		PFLU_RS20815	0.58	-0.8
4,681,306	-		PFLU_RS20815	0.59	+2.0
4,681,306	-		PFLU_RS20815	0.59	+1.6
4,681,306	-		PFLU_RS20815	0.59	-2.0
4,681,306	-		PFLU_RS20815	0.59	-1.6
4,681,323	-		PFLU_RS20815	0.63	+0.4
4,681,377	+		PFLU_RS20815	0.76	-2.5
4,681,378	-		PFLU_RS20815	0.77	-2.0
4,681,378	-		PFLU_RS20815	0.77	-3.1
4,681,378	-		PFLU_RS20815	0.77	-1.7
4,681,382	+		PFLU_RS20815	0.78	-0.3
4,681,382	+		PFLU_RS20815	0.78	-1.7
4,681,383	-		PFLU_RS20815	0.78	+0.8
4,681,383	-		PFLU_RS20815	0.78	+1.3
4,681,383	-		PFLU_RS20815	0.78	-2.7
4,681,394	+		PFLU_RS20815	0.81	-0.9
4,681,395	-		PFLU_RS20815	0.81	-1.0
4,681,397	+		PFLU_RS20815	0.81	+0.9
4,681,398	-		PFLU_RS20815	0.82	-2.3
4,681,398	-		PFLU_RS20815	0.82	+1.0
4,681,398	-		PFLU_RS20815	0.82	-1.2
4,681,427	+		PFLU_RS20815	0.89	+0.2
4,681,445	+				+1.0
4,681,486	+				+0.6
4,681,486	+				+2.2
4,681,486	+				-1.7
4,681,487	-				-0.5
4,681,487	-				-1.5
4,681,501	+				-1.2
4,681,501	+				-2.2
4,681,501	+				+1.4
4,681,501	+				-0.6
4,681,501	+				+0.2
4,681,513	-				-0.3
4,681,513	-				-2.9
4,681,670	+		PFLU_RS20820	0.21	+0.9
4,681,670	+		PFLU_RS20820	0.21	-2.0
4,681,670	+		PFLU_RS20820	0.21	-1.6
4,681,671	-		PFLU_RS20820	0.21	+0.8
4,681,671	-		PFLU_RS20820	0.21	-1.2
4,681,671	-		PFLU_RS20820	0.21	+1.2
4,681,673	+		PFLU_RS20820	0.21	-1.5
4,681,673	+		PFLU_RS20820	0.21	-0.4
4,681,674	-		PFLU_RS20820	0.21	+0.8
4,681,674	-		PFLU_RS20820	0.21	+0.7
4,681,674	-		PFLU_RS20820	0.21	-1.6
4,681,744	+		PFLU_RS20820	0.28	-0.0
4,681,744	+		PFLU_RS20820	0.28	-0.6
4,681,815	+		PFLU_RS20820	0.35	+0.8
4,681,816	-		PFLU_RS20820	0.36	-0.8
4,681,988	+		PFLU_RS20820	0.53	+2.3
4,681,989	-		PFLU_RS20820	0.53	-2.3
4,682,016	+		PFLU_RS20820	0.56	-2.2