Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17355

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
3,945,681	+		PFLU_RS17345	0.87	-2.6
3,945,681	+		PFLU_RS17345	0.87	-0.6
3,945,682	-		PFLU_RS17345	0.87	-1.3
3,945,864	+				-0.6
3,945,864	+				+1.5
3,945,864	+				-0.6
3,945,865	-				+1.8
3,945,865	-				-2.5
3,945,865	-				-2.6
3,945,865	-				-1.0
3,945,865	-				+1.4
3,945,865	-				-1.0
3,945,893	+				+1.2
3,945,894	-				+2.5
3,945,920	+				+1.5
3,945,920	+				+0.7
3,945,920	+				-1.4
3,945,920	+				+0.8
3,945,920	+				-0.8
3,945,920	+				-2.4
3,945,920	+				+1.6
3,945,920	+				+1.3
3,945,920	+				-2.8
3,945,920	+				+3.1
3,945,920	+				-2.0
3,945,920	+				+1.3
3,945,920	+				+2.8
3,945,920	+				+1.2
3,945,920	+				+1.9
3,945,920	+				-0.6
3,945,920	+				+1.5
3,945,920	+				-2.3
3,945,920	+				+0.1
3,945,920	+				+1.2
3,945,920	+				-1.7
3,945,920	+				+0.2
3,945,920	+				-0.6
3,945,920	+				-2.0
3,945,920	+				-1.4
3,945,920	+				-2.8
3,945,920	+				+1.2
3,945,921	-				+1.0
3,945,921	-				+0.2
3,945,921	-				+2.8
3,945,921	-				-0.7
3,945,921	-				+2.2
3,945,921	-				+2.3
3,945,921	-				+2.6
3,945,921	-				-1.0
3,945,921	-				-2.9
3,945,921	-				+1.5
3,945,921	-				+2.0
3,945,921	-				-1.7
3,945,921	-				-0.6
3,945,921	-				-1.8
3,945,921	-				-1.4
3,945,921	-				-1.2
3,945,921	-				-1.1
3,945,921	-				-1.4
3,945,921	-				-0.2
3,945,921	-				+2.1
3,945,921	-				+2.0
3,945,921	-				+2.0
3,945,921	-				+2.0
3,945,921	-				+1.8
3,945,921	-				+2.3
3,945,921	-				+0.0
3,945,921	-				+0.8
3,945,925	+				+0.8
3,945,925	+				-0.2
3,945,925	+				-0.7
3,945,925	+				-1.0
3,945,925	+				-1.0
3,945,925	+				-0.8
3,945,925	+				-1.4
3,945,925	+				-2.1
3,945,925	+				+0.3
3,945,925	+				-0.8
3,945,925	+				+3.8
3,945,925	+				-1.0
3,945,926	-				+0.6
3,945,926	-				-1.2
3,945,926	-				+0.2
3,945,926	-				-0.8
3,945,926	-				-0.8
3,945,926	-				+1.3
3,945,926	-				-1.2
3,945,926	-				+0.3
3,945,926	-				+3.5
3,945,938	+				-1.7
3,945,939	-				+1.3
3,945,975	+				-2.8
3,945,975	+				+1.1
3,945,976	-				-0.2
3,945,976	-				-1.6
3,946,018	-		PFLU_RS17350	0.13	-1.9
3,946,018	-		PFLU_RS17350	0.13	-0.2
3,946,018	-		PFLU_RS17350	0.13	+1.0
3,946,018	-		PFLU_RS17350	0.13	-1.2
3,946,022	+		PFLU_RS17350	0.13	+1.5
3,946,022	+		PFLU_RS17350	0.13	+1.1
3,946,022	+		PFLU_RS17350	0.13	-0.6
3,946,022	+		PFLU_RS17350	0.13	-2.0
3,946,022	+		PFLU_RS17350	0.13	+0.6
3,946,022	+		PFLU_RS17350	0.13	-0.8
3,946,022	+		PFLU_RS17350	0.13	+0.2
3,946,022	+		PFLU_RS17350	0.13	-1.2
3,946,022	+		PFLU_RS17350	0.13	+0.6
3,946,022	+		PFLU_RS17350	0.13	+0.2
3,946,022	+		PFLU_RS17350	0.13	+0.7
3,946,022	+		PFLU_RS17350	0.13	+1.1
3,946,022	+		PFLU_RS17350	0.13	-2.1
3,946,022	+		PFLU_RS17350	0.13	-1.0
3,946,022	+		PFLU_RS17350	0.13	+1.1
3,946,022	+		PFLU_RS17350	0.13	-0.7
3,946,022	+		PFLU_RS17350	0.13	+2.3
3,946,022	+		PFLU_RS17350	0.13	-0.6
3,946,023	-		PFLU_RS17350	0.13	-0.2
3,946,023	-		PFLU_RS17350	0.13	+0.6
3,946,023	-		PFLU_RS17350	0.13	+1.2
3,946,023	-		PFLU_RS17350	0.13	+1.0
3,946,023	-		PFLU_RS17350	0.13	-1.7
3,946,023	-		PFLU_RS17350	0.13	+0.5
3,946,023	-		PFLU_RS17350	0.13	+0.2
3,946,023	-		PFLU_RS17350	0.13	+0.8
3,946,023	-		PFLU_RS17350	0.13	+0.1
3,946,023	-		PFLU_RS17350	0.13	-1.4
3,946,023	-		PFLU_RS17350	0.13	-0.0
3,946,023	-		PFLU_RS17350	0.13	+0.9
3,946,023	-		PFLU_RS17350	0.13	+0.5
3,946,023	-		PFLU_RS17350	0.13	-0.0
3,946,023	-		PFLU_RS17350	0.13	+1.8
3,946,023	-		PFLU_RS17350	0.13	-0.1
3,946,023	-		PFLU_RS17350	0.13	+1.8
3,946,023	-		PFLU_RS17350	0.13	+1.8
3,946,023	-		PFLU_RS17350	0.13	+0.0
3,946,023	-		PFLU_RS17350	0.13	+0.8
3,946,024	+		PFLU_RS17350	0.13	-1.6
3,946,024	+		PFLU_RS17350	0.13	+0.2
3,946,024	+		PFLU_RS17350	0.13	-2.5
3,946,024	+		PFLU_RS17350	0.13	-2.3
3,946,024	+		PFLU_RS17350	0.13	+1.8
3,946,024	+		PFLU_RS17350	0.13	-1.7
3,946,024	+		PFLU_RS17350	0.13	+1.8
3,946,024	+		PFLU_RS17350	0.13	+1.0
3,946,024	+		PFLU_RS17350	0.13	-1.9
3,946,024	+		PFLU_RS17350	0.13	+1.3
3,946,024	+		PFLU_RS17350	0.13	-0.0
3,946,024	+		PFLU_RS17350	0.13	-1.2
3,946,024	+		PFLU_RS17350	0.13	+0.7
3,946,024	+		PFLU_RS17350	0.13	-0.6
3,946,024	+		PFLU_RS17350	0.13	+2.2
3,946,024	+		PFLU_RS17350	0.13	-1.6
3,946,025	-		PFLU_RS17350	0.14	-0.4
3,946,025	-		PFLU_RS17350	0.14	+0.6
3,946,025	-		PFLU_RS17350	0.14	+1.8
3,946,025	-		PFLU_RS17350	0.14	-1.2
3,946,025	-		PFLU_RS17350	0.14	-2.4
3,946,025	-		PFLU_RS17350	0.14	-1.6
3,946,025	-		PFLU_RS17350	0.14	-0.7
3,946,025	-		PFLU_RS17350	0.14	-0.6
3,946,025	-		PFLU_RS17350	0.14	+1.7
3,946,025	-		PFLU_RS17350	0.14	+0.8
3,946,025	-		PFLU_RS17350	0.14	+2.1
3,946,025	-		PFLU_RS17350	0.14	+1.6
3,946,026	+		PFLU_RS17350	0.14	+2.1
3,946,026	+		PFLU_RS17350	0.14	+0.2
3,946,026	+		PFLU_RS17350	0.14	-0.2
3,946,026	+		PFLU_RS17350	0.14	-2.8
3,946,026	+		PFLU_RS17350	0.14	-1.9
3,946,026	+		PFLU_RS17350	0.14	+0.6
3,946,026	+		PFLU_RS17350	0.14	+1.1
3,946,026	+		PFLU_RS17350	0.14	-1.9
3,946,026	+		PFLU_RS17350	0.14	-1.0
3,946,026	+		PFLU_RS17350	0.14	-0.6
3,946,027	-		PFLU_RS17350	0.14	-1.4
3,946,027	-		PFLU_RS17350	0.14	-1.4
3,946,027	-		PFLU_RS17350	0.14	-2.3
3,946,027	-		PFLU_RS17350	0.14	-0.2
3,946,027	-		PFLU_RS17350	0.14	+3.5
3,946,027	-		PFLU_RS17350	0.14	-1.4
3,946,027	-		PFLU_RS17350	0.14	+3.9
3,946,067	+		PFLU_RS17350	0.19	-2.0
3,946,147	+		PFLU_RS17350	0.31	-1.0
3,946,324	+		PFLU_RS17350	0.55	+1.8
3,946,324	+		PFLU_RS17350	0.55	+2.0
3,946,324	+		PFLU_RS17350	0.55	+2.0
3,946,324	+		PFLU_RS17350	0.55	-1.4
3,946,325	-		PFLU_RS17350	0.56	+1.0
3,946,325	-		PFLU_RS17350	0.56	+0.5
3,946,325	-		PFLU_RS17350	0.56	-1.6
3,946,325	-		PFLU_RS17350	0.56	+0.8
3,946,423	+		PFLU_RS17350	0.69	+1.6
3,946,519	-		PFLU_RS17350	0.83	-0.8
3,946,552	+		PFLU_RS17350	0.87	+0.4
3,946,585	+				+0.2
3,946,586	-				-0.7
3,946,586	-				-1.7
3,946,586	-				+2.1
3,946,617	+				+0.8
3,946,617	+				-0.1
3,946,618	-				-1.4
3,946,623	+				-1.4
3,946,623	+				+0.6
3,946,624	-				+3.5
3,946,624	-				+0.4
3,946,624	-				-1.0
3,946,624	-				+0.2
3,946,681	+				+1.1
3,946,681	+				+2.2
3,946,681	+				+0.9
3,946,681	+				+1.9
3,946,681	+				+0.2
3,946,681	+				+1.3
3,946,682	-				+0.1
3,946,682	-				-0.6
3,946,682	-				+1.5
3,946,682	-				+1.8
3,946,682	-				+1.3
3,947,044	+		PFLU_RS17355	0.50	-2.3
3,947,044	+		PFLU_RS17355	0.50	-2.8
3,947,044	+		PFLU_RS17355	0.50	+1.6
3,947,045	-		PFLU_RS17355	0.50	-0.6
3,947,045	-		PFLU_RS17355	0.50	-1.0
3,947,046	+		PFLU_RS17355	0.50	-1.9
3,947,047	-		PFLU_RS17355	0.50	+1.5
3,947,047	-		PFLU_RS17355	0.50	-2.9
3,947,047	-		PFLU_RS17355	0.50	+2.0
3,947,047	-		PFLU_RS17355	0.50	-0.1
3,947,232	+		PFLU_RS17355	0.75	-0.2
3,947,425	+				-0.4
3,947,426	-				+2.8
3,947,477	+				+1.7
3,947,477	+				-1.8
3,947,477	+				+3.6
3,947,477	+				+1.8
3,947,478	-				-0.6
3,947,478	-				+1.3
3,947,478	-				+1.7
3,947,487	-				-0.6
3,947,487	-				-2.0
3,947,487	-				-2.0
3,947,487	-				+0.5
3,947,487	-				-2.1
3,947,487	-				+0.9
3,947,487	-				-1.6
3,947,487	-				+4.6
3,947,487	-				-1.1
3,947,487	-				+0.2
3,947,487	-				-0.2
3,947,487	-				+1.5
3,947,487	-				-1.6
3,947,546	+				-1.2
3,947,613	-				+0.3
3,947,613	-				+1.3
3,947,613	-				-1.7
3,947,613	-				-2.8
3,947,613	-				+0.9
3,947,897	+				+0.3
3,947,911	+				-1.0
3,947,911	+				+1.0
3,947,911	+				-1.8
3,947,915	+				-2.0
3,947,922	+				-0.2
3,947,922	+				-0.2
3,947,922	+				-0.8
3,947,926	+				+0.2
3,947,926	+				-1.9
3,947,926	+				-1.2
3,947,926	+				-0.8
3,948,005	+				+1.0
3,948,063	+				+0.1
3,948,067	+				+0.8
3,948,067	+				+0.2
3,948,067	+				+0.5
3,948,067	+				+0.8
3,948,067	+				-0.4
3,948,067	+				+2.3
3,948,067	+				+0.2
3,948,067	+				-0.5
3,948,067	+				+0.9
3,948,067	+				-1.6
3,948,067	+				-1.4
3,948,068	-				+1.2
3,948,068	-				-1.6
3,948,068	-				+0.2
3,948,068	-				+0.4
3,948,068	-				+2.5
3,948,068	-				+0.6
3,948,068	-				-0.2
3,948,068	-				+0.8
3,948,068	-				-2.0
3,948,068	-				-1.2
3,948,068	-				+1.1
3,948,068	-				-0.2
3,948,068	-				-0.1
3,948,068	-				+0.0
3,948,068	-				+0.8
3,948,068	-				+0.2
3,948,068	-				+2.1
3,948,150	-		PFLU_RS17360	0.21	-0.6
3,948,180	+		PFLU_RS17360	0.30	+0.2
3,948,180	+		PFLU_RS17360	0.30	-1.4
3,948,180	+		PFLU_RS17360	0.30	-1.9
3,948,180	+		PFLU_RS17360	0.30	+1.5
3,948,180	+		PFLU_RS17360	0.30	+1.0
3,948,181	-		PFLU_RS17360	0.30	+1.2
3,948,181	-		PFLU_RS17360	0.30	+1.5
3,948,181	-		PFLU_RS17360	0.30	-2.7
3,948,181	-		PFLU_RS17360	0.30	+0.9
3,948,182	+		PFLU_RS17360	0.30	+2.3
3,948,182	+		PFLU_RS17360	0.30	+1.0
3,948,182	+		PFLU_RS17360	0.30	-1.6
3,948,182	+		PFLU_RS17360	0.30	-2.0
3,948,182	+		PFLU_RS17360	0.30	-1.2
3,948,183	-		PFLU_RS17360	0.30	+2.0
3,948,183	-		PFLU_RS17360	0.30	+1.2
3,948,305	+		PFLU_RS17360	0.66	-1.2
3,948,305	+		PFLU_RS17360	0.66	-1.0
3,948,305	+		PFLU_RS17360	0.66	+1.8
3,948,305	+		PFLU_RS17360	0.66	+1.2
3,948,305	+		PFLU_RS17360	0.66	-0.8
3,948,305	+		PFLU_RS17360	0.66	+0.2
3,948,305	+		PFLU_RS17360	0.66	+0.8
3,948,306	-		PFLU_RS17360	0.66	-1.0
3,948,306	-		PFLU_RS17360	0.66	+0.2
3,948,306	-		PFLU_RS17360	0.66	-2.2
3,948,306	-		PFLU_RS17360	0.66	-0.7