Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15250

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
3,415,375	+		PFLU_RS15240	0.54	+0.1
3,415,376	-		PFLU_RS15240	0.55	-0.9
3,415,376	-		PFLU_RS15240	0.55	+0.1
3,415,396	+		PFLU_RS15240	0.58	+1.1
3,415,397	-		PFLU_RS15240	0.58	+0.2
3,415,454	+		PFLU_RS15240	0.67	+1.5
3,415,454	+		PFLU_RS15240	0.67	+1.7
3,415,494	+		PFLU_RS15240	0.73	-0.1
3,415,494	+		PFLU_RS15240	0.73	+1.3
3,415,494	+		PFLU_RS15240	0.73	+1.1
3,415,494	+		PFLU_RS15240	0.73	+0.7
3,415,494	+		PFLU_RS15240	0.73	-0.2
3,415,495	-		PFLU_RS15240	0.73	-0.2
3,415,495	-		PFLU_RS15240	0.73	+0.1
3,415,495	-		PFLU_RS15240	0.73	+0.7
3,415,495	-		PFLU_RS15240	0.73	+2.1
3,415,495	-		PFLU_RS15240	0.73	-1.7
3,415,501	+		PFLU_RS15240	0.74	-0.9
3,415,538	-		PFLU_RS15240	0.80	+0.1
3,415,637	+				+0.5
3,415,654	-				-0.9
3,415,654	-				-0.7
3,415,654	-				+0.0
3,415,689	-				-1.5
3,415,689	-				+1.3
3,415,691	+				-0.1
3,415,691	+				-1.2
3,415,692	-				-0.9
3,415,692	-				-0.2
3,415,692	-				-1.3
3,415,753	+		PFLU_RS15245	0.11	-1.8
3,415,753	+		PFLU_RS15245	0.11	-2.3
3,415,755	+		PFLU_RS15245	0.11	+0.7
3,415,755	+		PFLU_RS15245	0.11	-0.1
3,415,756	-		PFLU_RS15245	0.11	+1.4
3,415,756	-		PFLU_RS15245	0.11	+0.8
3,415,952	+		PFLU_RS15245	0.41	-2.6
3,415,953	-		PFLU_RS15245	0.41	+2.3
3,415,953	-		PFLU_RS15245	0.41	-0.7
3,415,972	+		PFLU_RS15245	0.44	+0.7
3,415,973	-		PFLU_RS15245	0.44	+2.6
3,415,973	-		PFLU_RS15245	0.44	-0.3
3,416,057	+		PFLU_RS15245	0.57	-2.2
3,416,073	+		PFLU_RS15245	0.59	-2.2
3,416,074	-		PFLU_RS15245	0.59	+3.8
3,416,107	+		PFLU_RS15245	0.64	-1.8
3,416,108	-		PFLU_RS15245	0.64	-1.2
3,416,144	-		PFLU_RS15245	0.70	+1.2
3,416,144	-		PFLU_RS15245	0.70	+0.7
3,416,144	-		PFLU_RS15245	0.70	-0.9
3,416,144	-		PFLU_RS15245	0.70	-1.8
3,416,215	+		PFLU_RS15245	0.81	+1.7
3,416,320	+				-1.3
3,416,320	+				+2.0
3,416,321	-				+1.9
3,416,321	-				-0.9
3,416,321	-				-0.9
3,416,375	+				-0.3
3,416,375	+				-2.5
3,416,376	-				+2.2
3,416,454	+				-0.9
3,416,455	-				-1.2
3,416,552	+		PFLU_RS15250	0.15	-1.3
3,416,552	+		PFLU_RS15250	0.15	+0.7
3,416,595	+		PFLU_RS15250	0.19	+2.1
3,416,595	+		PFLU_RS15250	0.19	-0.8
3,416,595	+		PFLU_RS15250	0.19	-0.3
3,416,603	+		PFLU_RS15250	0.19	+1.3
3,416,797	+		PFLU_RS15250	0.33	-1.3
3,416,797	+		PFLU_RS15250	0.33	+0.3
3,416,798	-		PFLU_RS15250	0.33	+0.1
3,416,798	-		PFLU_RS15250	0.33	-0.7
3,416,798	-		PFLU_RS15250	0.33	+2.2
3,416,798	-		PFLU_RS15250	0.33	-1.2
3,416,831	+		PFLU_RS15250	0.36	-1.9
3,416,832	-		PFLU_RS15250	0.36	-2.4
3,416,832	-		PFLU_RS15250	0.36	+4.2
3,417,093	-		PFLU_RS15250	0.55	+1.7
3,417,130	+		PFLU_RS15250	0.58	+0.1
3,417,131	-		PFLU_RS15250	0.58	-1.0
3,417,131	-		PFLU_RS15250	0.58	-1.5
3,417,265	+		PFLU_RS15250	0.68	+1.2
3,417,265	+		PFLU_RS15250	0.68	-0.3
3,417,265	+		PFLU_RS15250	0.68	-1.2
3,417,266	-		PFLU_RS15250	0.68	-1.7
3,417,454	-		PFLU_RS15250	0.81	+1.5
3,417,464	+		PFLU_RS15250	0.82	-1.9
3,417,465	-		PFLU_RS15250	0.82	-0.2
3,417,465	-		PFLU_RS15250	0.82	-1.7
3,417,567	+		PFLU_RS15250	0.90	-0.7
3,417,567	+		PFLU_RS15250	0.90	+0.2
3,417,613	+				-0.3
3,417,613	+				-1.5
3,417,613	+				-2.6
3,417,613	+				-2.7
3,417,613	+				-1.3
3,417,613	+				+2.4
3,417,614	-				+0.1
3,417,614	-				-1.2
3,417,646	+				-1.3
3,417,646	+				-2.0
3,417,836	-				+1.3
3,417,849	+				-0.9
3,417,849	+				+0.1
3,417,849	+				+0.5
3,417,850	-				-0.3
3,417,850	-				+1.9
3,417,850	-				-2.2
3,417,850	-				+1.4
3,417,850	-				-0.3
3,417,850	-				-1.0
3,417,850	-				+0.5
3,417,879	-				-2.2
3,417,879	-				-1.7
3,417,879	-				+0.7
3,417,879	-				+0.8
3,417,879	-				+2.7
3,417,932	-				-0.6
3,417,932	-				+0.5
3,417,948	-				-1.7
3,418,031	+				+0.3
3,418,031	+				+0.7
3,418,031	+				-2.0
3,418,031	+				+2.7
3,418,068	+				-0.3
3,418,068	+				+2.1
3,418,069	-				-0.9
3,418,069	-				+3.5
3,418,453	+		PFLU_RS15255	0.27	-0.3
3,418,453	+		PFLU_RS15255	0.27	-0.7
3,418,453	+		PFLU_RS15255	0.27	+1.9
3,418,453	+		PFLU_RS15255	0.27	-1.3
3,418,453	+		PFLU_RS15255	0.27	-0.6
3,418,453	+		PFLU_RS15255	0.27	-0.9
3,418,453	+		PFLU_RS15255	0.27	+2.0
3,418,453	+		PFLU_RS15255	0.27	+0.1
3,418,453	+		PFLU_RS15255	0.27	-1.8
3,418,453	+		PFLU_RS15255	0.27	+0.8
3,418,453	+		PFLU_RS15255	0.27	-1.5
3,418,453	+		PFLU_RS15255	0.27	-0.2
3,418,454	-		PFLU_RS15255	0.27	-1.2
3,418,454	-		PFLU_RS15255	0.27	-1.9
3,418,454	-		PFLU_RS15255	0.27	+1.2
3,418,454	-		PFLU_RS15255	0.27	+1.4
3,418,454	-		PFLU_RS15255	0.27	+0.4
3,418,454	-		PFLU_RS15255	0.27	-2.9
3,418,454	-		PFLU_RS15255	0.27	+0.3
3,418,454	-		PFLU_RS15255	0.27	-3.3
3,418,454	-		PFLU_RS15255	0.27	-1.7
3,418,454	-		PFLU_RS15255	0.27	-0.7
3,418,454	-		PFLU_RS15255	0.27	-1.4
3,418,454	-		PFLU_RS15255	0.27	+1.7
3,418,454	-		PFLU_RS15255	0.27	+0.8
3,418,454	-		PFLU_RS15255	0.27	+0.2
3,418,465	+		PFLU_RS15255	0.28	+0.8
3,418,465	+		PFLU_RS15255	0.28	-1.7
3,418,465	+		PFLU_RS15255	0.28	-0.0
3,418,465	+		PFLU_RS15255	0.28	-1.3
3,418,465	+		PFLU_RS15255	0.28	-0.9
3,418,465	+		PFLU_RS15255	0.28	+0.1
3,418,465	+		PFLU_RS15255	0.28	-2.3
3,418,466	-		PFLU_RS15255	0.28	-1.5
3,418,466	-		PFLU_RS15255	0.28	-3.0
3,418,466	-		PFLU_RS15255	0.28	+1.1
3,418,466	-		PFLU_RS15255	0.28	+0.2
3,418,466	-		PFLU_RS15255	0.28	-2.7
3,418,466	-		PFLU_RS15255	0.28	+0.1
3,418,466	-		PFLU_RS15255	0.28	+0.4
3,418,466	-		PFLU_RS15255	0.28	-0.9
3,418,466	-		PFLU_RS15255	0.28	+0.7
3,418,466	-		PFLU_RS15255	0.28	-1.2
3,418,466	-		PFLU_RS15255	0.28	-0.3
3,418,466	-		PFLU_RS15255	0.28	-2.3
3,418,466	-		PFLU_RS15255	0.28	+0.6
3,418,466	-		PFLU_RS15255	0.28	-0.9
3,418,466	-		PFLU_RS15255	0.28	+1.5