Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS05360 and PFLU_RS05365 are separated by 210 nucleotides PFLU_RS05365 and PFLU_RS05370 overlap by 17 nucleotides
PFLU_RS05360: PFLU_RS05360 - GGDEF and EAL domain-containing protein, at 1,194,128 to 1,196,464
_RS05360
PFLU_RS05365: PFLU_RS05365 - methylamine utilization protein, at 1,196,675 to 1,197,352
_RS05365
PFLU_RS05370: PFLU_RS05370 - EAL domain-containing protein, at 1,197,336 to 1,199,684
_RS05370
Position (kb) 1196
1197
1198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1195.751 kb on + strand, within PFLU_RS05360 at 1195.972 kb on + strand, within PFLU_RS05360 at 1195.973 kb on - strand, within PFLU_RS05360 at 1195.973 kb on - strand, within PFLU_RS05360 at 1196.037 kb on - strand, within PFLU_RS05360 at 1196.037 kb on - strand, within PFLU_RS05360 at 1196.367 kb on + strand at 1196.367 kb on + strand at 1196.368 kb on - strand at 1196.393 kb on + strand at 1196.393 kb on + strand at 1196.393 kb on + strand at 1196.393 kb on + strand at 1196.393 kb on + strand at 1196.393 kb on + strand at 1196.394 kb on - strand at 1196.394 kb on - strand at 1196.394 kb on - strand at 1196.394 kb on - strand at 1196.462 kb on + strand at 1196.462 kb on + strand at 1196.462 kb on + strand at 1196.462 kb on + strand at 1196.462 kb on + strand at 1196.462 kb on + strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.463 kb on - strand at 1196.466 kb on + strand at 1196.466 kb on + strand at 1196.466 kb on + strand at 1196.466 kb on + strand at 1196.466 kb on + strand at 1196.466 kb on + strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.467 kb on - strand at 1196.515 kb on - strand at 1196.535 kb on + strand at 1196.535 kb on + strand at 1196.535 kb on + strand at 1196.535 kb on + strand at 1196.535 kb on + strand at 1196.535 kb on + strand at 1196.535 kb on + strand at 1196.536 kb on - strand at 1196.536 kb on - strand at 1196.536 kb on - strand at 1196.569 kb on + strand at 1196.569 kb on + strand at 1196.570 kb on - strand at 1196.588 kb on + strand at 1196.651 kb on + strand at 1196.652 kb on - strand at 1196.652 kb on - strand at 1196.899 kb on + strand, within PFLU_RS05365 at 1196.926 kb on + strand, within PFLU_RS05365 at 1196.926 kb on + strand, within PFLU_RS05365 at 1196.927 kb on - strand, within PFLU_RS05365 at 1196.935 kb on + strand, within PFLU_RS05365 at 1196.936 kb on - strand, within PFLU_RS05365 at 1196.936 kb on - strand, within PFLU_RS05365 at 1196.936 kb on - strand, within PFLU_RS05365 at 1196.951 kb on + strand, within PFLU_RS05365 at 1196.951 kb on + strand, within PFLU_RS05365 at 1196.951 kb on + strand, within PFLU_RS05365 at 1196.951 kb on + strand, within PFLU_RS05365 at 1196.952 kb on - strand, within PFLU_RS05365 at 1196.952 kb on - strand, within PFLU_RS05365 at 1196.952 kb on - strand, within PFLU_RS05365 at 1196.991 kb on - strand, within PFLU_RS05365 at 1197.026 kb on - strand, within PFLU_RS05365 at 1197.077 kb on + strand, within PFLU_RS05365 at 1197.077 kb on + strand, within PFLU_RS05365 at 1197.077 kb on + strand, within PFLU_RS05365 at 1197.077 kb on + strand, within PFLU_RS05365 at 1197.077 kb on + strand, within PFLU_RS05365 at 1197.077 kb on + strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.078 kb on - strand, within PFLU_RS05365 at 1197.079 kb on + strand, within PFLU_RS05365 at 1197.079 kb on + strand, within PFLU_RS05365 at 1197.079 kb on + strand, within PFLU_RS05365 at 1197.079 kb on + strand, within PFLU_RS05365 at 1197.079 kb on + strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.080 kb on - strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.083 kb on + strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.084 kb on - strand, within PFLU_RS05365 at 1197.161 kb on + strand, within PFLU_RS05365 at 1197.161 kb on + strand, within PFLU_RS05365 at 1197.175 kb on - strand, within PFLU_RS05365 at 1197.175 kb on - strand, within PFLU_RS05365 at 1197.196 kb on + strand, within PFLU_RS05365 at 1197.350 kb on + strand at 1197.350 kb on + strand at 1197.350 kb on + strand at 1197.350 kb on + strand at 1197.351 kb on - strand at 1197.351 kb on - strand at 1197.351 kb on - strand at 1197.414 kb on + strand at 1197.414 kb on + strand at 1197.414 kb on + strand at 1197.414 kb on + strand at 1197.414 kb on + strand at 1197.414 kb on + strand at 1197.415 kb on - strand at 1197.415 kb on - strand at 1197.415 kb on - strand at 1197.415 kb on - strand at 1197.415 kb on - strand at 1197.415 kb on - strand at 1197.415 kb on - strand at 1197.626 kb on + strand, within PFLU_RS05370 at 1197.626 kb on + strand, within PFLU_RS05370 at 1197.626 kb on + strand, within PFLU_RS05370 at 1197.627 kb on - strand, within PFLU_RS05370 at 1197.627 kb on - strand, within PFLU_RS05370 at 1197.632 kb on + strand, within PFLU_RS05370 at 1197.632 kb on + strand, within PFLU_RS05370 at 1197.632 kb on + strand, within PFLU_RS05370 at 1197.632 kb on + strand, within PFLU_RS05370 at 1197.633 kb on - strand, within PFLU_RS05370 at 1197.633 kb on - strand, within PFLU_RS05370 at 1197.633 kb on - strand, within PFLU_RS05370 at 1197.633 kb on - strand, within PFLU_RS05370 at 1197.971 kb on - strand, within PFLU_RS05370 at 1197.971 kb on - strand, within PFLU_RS05370 at 1197.971 kb on - strand, within PFLU_RS05370 at 1197.983 kb on + strand, within PFLU_RS05370 at 1198.095 kb on - strand, within PFLU_RS05370 at 1198.271 kb on + strand, within PFLU_RS05370
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 1,195,751 + PFLU_RS05360 0.69 +0.0 1,195,972 + PFLU_RS05360 0.79 -1.0 1,195,973 - PFLU_RS05360 0.79 +0.1 1,195,973 - PFLU_RS05360 0.79 -0.4 1,196,037 - PFLU_RS05360 0.82 -0.7 1,196,037 - PFLU_RS05360 0.82 +2.0 1,196,367 + -2.7 1,196,367 + -2.3 1,196,368 - +1.9 1,196,393 + +0.1 1,196,393 + +1.1 1,196,393 + -2.6 1,196,393 + -2.8 1,196,393 + +0.7 1,196,393 + -0.9 1,196,394 - +1.1 1,196,394 - -2.7 1,196,394 - +0.0 1,196,394 - +1.4 1,196,462 + -1.0 1,196,462 + -0.3 1,196,462 + +0.4 1,196,462 + -2.9 1,196,462 + -0.7 1,196,462 + -2.8 1,196,463 - -0.3 1,196,463 - -0.7 1,196,463 - +1.1 1,196,463 - +2.1 1,196,463 - +1.1 1,196,463 - +1.3 1,196,463 - +0.5 1,196,463 - -1.3 1,196,463 - +0.1 1,196,463 - +1.5 1,196,463 - +0.8 1,196,463 - -0.8 1,196,463 - +0.6 1,196,466 + -0.2 1,196,466 + +1.4 1,196,466 + -1.2 1,196,466 + -2.3 1,196,466 + -2.1 1,196,466 + +0.3 1,196,467 - -2.1 1,196,467 - -0.1 1,196,467 - -0.2 1,196,467 - -1.9 1,196,467 - +0.9 1,196,467 - +1.1 1,196,467 - +0.8 1,196,467 - -1.9 1,196,515 - +0.1 1,196,535 + +0.1 1,196,535 + -0.0 1,196,535 + -0.7 1,196,535 + +0.1 1,196,535 + -1.1 1,196,535 + +0.2 1,196,535 + +1.1 1,196,536 - +1.6 1,196,536 - -1.9 1,196,536 - -0.4 1,196,569 + +0.3 1,196,569 + +0.7 1,196,570 - +1.1 1,196,588 + +0.9 1,196,651 + -1.1 1,196,652 - -2.4 1,196,652 - -2.6 1,196,899 + PFLU_RS05365 0.33 -0.4 1,196,926 + PFLU_RS05365 0.37 +4.0 1,196,926 + PFLU_RS05365 0.37 +0.6 1,196,927 - PFLU_RS05365 0.37 +1.1 1,196,935 + PFLU_RS05365 0.38 +0.7 1,196,936 - PFLU_RS05365 0.38 -2.3 1,196,936 - PFLU_RS05365 0.38 -1.6 1,196,936 - PFLU_RS05365 0.38 +0.0 1,196,951 + PFLU_RS05365 0.41 -1.8 1,196,951 + PFLU_RS05365 0.41 +1.4 1,196,951 + PFLU_RS05365 0.41 +0.1 1,196,951 + PFLU_RS05365 0.41 +0.6 1,196,952 - PFLU_RS05365 0.41 -1.8 1,196,952 - PFLU_RS05365 0.41 -1.9 1,196,952 - PFLU_RS05365 0.41 +1.4 1,196,991 - PFLU_RS05365 0.47 -1.3 1,197,026 - PFLU_RS05365 0.52 -2.7 1,197,077 + PFLU_RS05365 0.59 -2.7 1,197,077 + PFLU_RS05365 0.59 +0.9 1,197,077 + PFLU_RS05365 0.59 -0.1 1,197,077 + PFLU_RS05365 0.59 +2.8 1,197,077 + PFLU_RS05365 0.59 -2.8 1,197,077 + PFLU_RS05365 0.59 -1.9 1,197,078 - PFLU_RS05365 0.59 -1.8 1,197,078 - PFLU_RS05365 0.59 -0.7 1,197,078 - PFLU_RS05365 0.59 +0.9 1,197,078 - PFLU_RS05365 0.59 +0.8 1,197,078 - PFLU_RS05365 0.59 +1.7 1,197,078 - PFLU_RS05365 0.59 -2.4 1,197,078 - PFLU_RS05365 0.59 -2.3 1,197,078 - PFLU_RS05365 0.59 +1.6 1,197,078 - PFLU_RS05365 0.59 +0.1 1,197,078 - PFLU_RS05365 0.59 +0.4 1,197,078 - PFLU_RS05365 0.59 +1.6 1,197,079 + PFLU_RS05365 0.60 -1.2 1,197,079 + PFLU_RS05365 0.60 -1.9 1,197,079 + PFLU_RS05365 0.60 +0.9 1,197,079 + PFLU_RS05365 0.60 -0.1 1,197,079 + PFLU_RS05365 0.60 -1.0 1,197,080 - PFLU_RS05365 0.60 -1.9 1,197,080 - PFLU_RS05365 0.60 +2.9 1,197,080 - PFLU_RS05365 0.60 +1.9 1,197,080 - PFLU_RS05365 0.60 -0.3 1,197,080 - PFLU_RS05365 0.60 -1.0 1,197,080 - PFLU_RS05365 0.60 +1.0 1,197,080 - PFLU_RS05365 0.60 -2.3 1,197,080 - PFLU_RS05365 0.60 +0.1 1,197,080 - PFLU_RS05365 0.60 -3.0 1,197,080 - PFLU_RS05365 0.60 -0.4 1,197,080 - PFLU_RS05365 0.60 +1.8 1,197,083 + PFLU_RS05365 0.60 +1.2 1,197,083 + PFLU_RS05365 0.60 +1.1 1,197,083 + PFLU_RS05365 0.60 +0.9 1,197,083 + PFLU_RS05365 0.60 -1.6 1,197,083 + PFLU_RS05365 0.60 +0.0 1,197,083 + PFLU_RS05365 0.60 -1.2 1,197,083 + PFLU_RS05365 0.60 -1.0 1,197,083 + PFLU_RS05365 0.60 -1.7 1,197,083 + PFLU_RS05365 0.60 +1.1 1,197,083 + PFLU_RS05365 0.60 -1.9 1,197,083 + PFLU_RS05365 0.60 +0.1 1,197,083 + PFLU_RS05365 0.60 -0.6 1,197,083 + PFLU_RS05365 0.60 -0.2 1,197,083 + PFLU_RS05365 0.60 +0.5 1,197,083 + PFLU_RS05365 0.60 +1.6 1,197,083 + PFLU_RS05365 0.60 -2.0 1,197,083 + PFLU_RS05365 0.60 -1.6 1,197,083 + PFLU_RS05365 0.60 +2.0 1,197,083 + PFLU_RS05365 0.60 +0.1 1,197,083 + PFLU_RS05365 0.60 +0.3 1,197,083 + PFLU_RS05365 0.60 -1.6 1,197,083 + PFLU_RS05365 0.60 +1.9 1,197,083 + PFLU_RS05365 0.60 -2.6 1,197,084 - PFLU_RS05365 0.60 +1.2 1,197,084 - PFLU_RS05365 0.60 +1.1 1,197,084 - PFLU_RS05365 0.60 +0.4 1,197,084 - PFLU_RS05365 0.60 -2.4 1,197,084 - PFLU_RS05365 0.60 +0.6 1,197,084 - PFLU_RS05365 0.60 +1.0 1,197,084 - PFLU_RS05365 0.60 -2.9 1,197,084 - PFLU_RS05365 0.60 -2.5 1,197,084 - PFLU_RS05365 0.60 +0.8 1,197,084 - PFLU_RS05365 0.60 +0.3 1,197,084 - PFLU_RS05365 0.60 +1.0 1,197,084 - PFLU_RS05365 0.60 +0.6 1,197,084 - PFLU_RS05365 0.60 +0.8 1,197,084 - PFLU_RS05365 0.60 -0.9 1,197,084 - PFLU_RS05365 0.60 +1.3 1,197,084 - PFLU_RS05365 0.60 +0.4 1,197,084 - PFLU_RS05365 0.60 +0.1 1,197,084 - PFLU_RS05365 0.60 -0.3 1,197,084 - PFLU_RS05365 0.60 -1.7 1,197,084 - PFLU_RS05365 0.60 +2.0 1,197,084 - PFLU_RS05365 0.60 +2.4 1,197,084 - PFLU_RS05365 0.60 +0.8 1,197,084 - PFLU_RS05365 0.60 +1.9 1,197,084 - PFLU_RS05365 0.60 +1.5 1,197,161 + PFLU_RS05365 0.72 -0.9 1,197,161 + PFLU_RS05365 0.72 -1.3 1,197,175 - PFLU_RS05365 0.74 -0.1 1,197,175 - PFLU_RS05365 0.74 +1.1 1,197,196 + PFLU_RS05365 0.77 -0.9 1,197,350 + +0.8 1,197,350 + -0.7 1,197,350 + -1.3 1,197,350 + +2.3 1,197,351 - -0.4 1,197,351 - -0.8 1,197,351 - -3.0 1,197,414 + -0.4 1,197,414 + +1.1 1,197,414 + +1.0 1,197,414 + +3.1 1,197,414 + +1.1 1,197,414 + +1.7 1,197,415 - +0.6 1,197,415 - +1.9 1,197,415 - -1.2 1,197,415 - -0.5 1,197,415 - -1.0 1,197,415 - +0.8 1,197,415 - +0.6 1,197,626 + PFLU_RS05370 0.12 -1.3 1,197,626 + PFLU_RS05370 0.12 +0.1 1,197,626 + PFLU_RS05370 0.12 -1.2 1,197,627 - PFLU_RS05370 0.12 -2.3 1,197,627 - PFLU_RS05370 0.12 -0.9 1,197,632 + PFLU_RS05370 0.13 +1.0 1,197,632 + PFLU_RS05370 0.13 +1.8 1,197,632 + PFLU_RS05370 0.13 +0.4 1,197,632 + PFLU_RS05370 0.13 +0.5 1,197,633 - PFLU_RS05370 0.13 -1.6 1,197,633 - PFLU_RS05370 0.13 -2.3 1,197,633 - PFLU_RS05370 0.13 -2.3 1,197,633 - PFLU_RS05370 0.13 -1.0 1,197,971 - PFLU_RS05370 0.27 +0.5 1,197,971 - PFLU_RS05370 0.27 +1.0 1,197,971 - PFLU_RS05370 0.27 +1.6 1,197,983 + PFLU_RS05370 0.28 -1.0 1,198,095 - PFLU_RS05370 0.32 -0.2 1,198,271 + PFLU_RS05370 0.40 -0.1
Or see this region's nucleotide sequence