Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05355

Experiment: L-Lysine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C)
1,191,435	+				+0.9
1,191,435	+				+0.6
1,191,435	+				+1.7
1,191,435	+				-0.6
1,191,436	-				+0.3
1,191,436	-				+1.5
1,191,436	-				-1.4
1,191,436	-				+0.4
1,191,436	-				-1.4
1,191,450	+				+1.5
1,191,450	+				+2.1
1,191,451	-				-0.2
1,191,451	-				+0.0
1,191,451	-				-3.0
1,191,451	-				-1.3
1,191,605	+		PFLU_RS05350	0.17	+1.4
1,191,605	+		PFLU_RS05350	0.17	+1.1
1,191,605	+		PFLU_RS05350	0.17	-0.4
1,191,605	+		PFLU_RS05350	0.17	-1.3
1,191,605	+		PFLU_RS05350	0.17	+2.5
1,191,605	+		PFLU_RS05350	0.17	-0.6
1,191,605	+		PFLU_RS05350	0.17	+2.3
1,191,605	+		PFLU_RS05350	0.17	-2.4
1,191,605	+		PFLU_RS05350	0.17	+1.9
1,191,605	+		PFLU_RS05350	0.17	+1.4
1,191,605	+		PFLU_RS05350	0.17	-0.5
1,191,606	-		PFLU_RS05350	0.17	-1.2
1,191,606	-		PFLU_RS05350	0.17	-0.2
1,191,606	-		PFLU_RS05350	0.17	+0.7
1,191,606	-		PFLU_RS05350	0.17	-1.9
1,191,606	-		PFLU_RS05350	0.17	+1.3
1,191,606	-		PFLU_RS05350	0.17	+1.1
1,191,606	-		PFLU_RS05350	0.17	-2.8
1,191,606	-		PFLU_RS05350	0.17	-0.9
1,191,606	-		PFLU_RS05350	0.17	-0.4
1,191,606	-		PFLU_RS05350	0.17	+0.4
1,191,606	-		PFLU_RS05350	0.17	-2.2
1,191,899	+		PFLU_RS05350	0.47	+0.3
1,191,899	+		PFLU_RS05350	0.47	+0.6
1,191,899	+		PFLU_RS05350	0.47	-0.6
1,191,900	-		PFLU_RS05350	0.48	+1.0
1,191,900	-		PFLU_RS05350	0.48	+1.1
1,191,973	-		PFLU_RS05350	0.55	+0.1
1,191,973	-		PFLU_RS05350	0.55	-0.0
1,191,987	+		PFLU_RS05350	0.57	-1.4
1,192,095	+		PFLU_RS05350	0.68	+1.2
1,192,096	-		PFLU_RS05350	0.68	+1.0
1,192,181	+		PFLU_RS05350	0.76	-0.7
1,192,181	+		PFLU_RS05350	0.76	+0.1
1,192,181	+		PFLU_RS05350	0.76	-1.8
1,192,181	+		PFLU_RS05350	0.76	-1.6
1,192,182	-		PFLU_RS05350	0.77	-0.4
1,192,182	-		PFLU_RS05350	0.77	-2.1
1,192,182	-		PFLU_RS05350	0.77	-1.8
1,192,182	-		PFLU_RS05350	0.77	+0.1
1,192,339	-				+2.1
1,192,462	+				+1.8
1,192,462	+				+2.7
1,192,497	+				+0.5
1,192,497	+				-1.0
1,192,497	+				-0.3
1,192,497	+				+1.3
1,192,497	+				+1.3
1,192,497	+				-0.7
1,192,498	-				-2.2
1,192,498	-				+2.1
1,192,498	-				-1.9
1,192,554	+		PFLU_RS05355	0.12	+0.1
1,192,554	+		PFLU_RS05355	0.12	-2.2
1,192,554	+		PFLU_RS05355	0.12	+0.8
1,192,554	+		PFLU_RS05355	0.12	+1.0
1,192,554	+		PFLU_RS05355	0.12	+1.9
1,192,554	+		PFLU_RS05355	0.12	-1.0
1,192,554	+		PFLU_RS05355	0.12	+0.1
1,192,554	+		PFLU_RS05355	0.12	+1.8
1,192,554	+		PFLU_RS05355	0.12	+0.6
1,192,554	+		PFLU_RS05355	0.12	+0.1
1,192,554	+		PFLU_RS05355	0.12	+0.6
1,192,554	+		PFLU_RS05355	0.12	+0.2
1,192,554	+		PFLU_RS05355	0.12	-0.7
1,192,554	+		PFLU_RS05355	0.12	-0.3
1,192,554	+		PFLU_RS05355	0.12	-1.2
1,192,554	+		PFLU_RS05355	0.12	-1.2
1,192,554	+		PFLU_RS05355	0.12	+0.5
1,192,555	-		PFLU_RS05355	0.13	-0.0
1,192,555	-		PFLU_RS05355	0.13	-1.6
1,192,555	-		PFLU_RS05355	0.13	-0.1
1,192,555	-		PFLU_RS05355	0.13	+1.9
1,192,555	-		PFLU_RS05355	0.13	+0.7
1,192,555	-		PFLU_RS05355	0.13	-2.1
1,192,555	-		PFLU_RS05355	0.13	-0.8
1,192,555	-		PFLU_RS05355	0.13	+1.3
1,192,555	-		PFLU_RS05355	0.13	-0.3
1,192,555	-		PFLU_RS05355	0.13	-1.8
1,192,555	-		PFLU_RS05355	0.13	+0.9
1,192,555	-		PFLU_RS05355	0.13	+0.3
1,192,563	+		PFLU_RS05355	0.13	-3.2
1,192,563	+		PFLU_RS05355	0.13	+0.8
1,192,563	+		PFLU_RS05355	0.13	+0.1
1,192,563	+		PFLU_RS05355	0.13	-0.7
1,192,564	-		PFLU_RS05355	0.13	+1.2
1,192,564	-		PFLU_RS05355	0.13	-1.7
1,192,564	-		PFLU_RS05355	0.13	+1.1
1,192,902	-		PFLU_RS05355	0.42	-0.2
1,192,994	+		PFLU_RS05355	0.50	-2.9
1,192,994	+		PFLU_RS05355	0.50	-2.6
1,192,994	+		PFLU_RS05355	0.50	+1.3
1,192,995	-		PFLU_RS05355	0.50	-2.1
1,192,995	-		PFLU_RS05355	0.50	-1.4
1,192,995	-		PFLU_RS05355	0.50	+1.7
1,193,114	+		PFLU_RS05355	0.60	-0.7
1,193,115	-		PFLU_RS05355	0.60	-0.3
1,193,268	+		PFLU_RS05355	0.73	+0.7
1,193,268	+		PFLU_RS05355	0.73	-2.3
1,193,268	+		PFLU_RS05355	0.73	-1.2
1,193,268	+		PFLU_RS05355	0.73	-1.0
1,193,268	+		PFLU_RS05355	0.73	-1.0
1,193,268	+		PFLU_RS05355	0.73	-2.9
1,193,268	+		PFLU_RS05355	0.73	+1.0
1,193,268	+		PFLU_RS05355	0.73	+1.0
1,193,268	+		PFLU_RS05355	0.73	-0.8
1,193,269	-		PFLU_RS05355	0.73	-1.6
1,193,274	+		PFLU_RS05355	0.74	+3.1
1,193,274	+		PFLU_RS05355	0.74	+2.0
1,193,275	-		PFLU_RS05355	0.74	+1.9
1,193,275	-		PFLU_RS05355	0.74	+3.1
1,193,328	+		PFLU_RS05355	0.78	-3.4
1,193,328	+		PFLU_RS05355	0.78	-1.1
1,193,328	+		PFLU_RS05355	0.78	-0.4
1,193,328	+		PFLU_RS05355	0.78	+0.1
1,193,329	-		PFLU_RS05355	0.78	+2.0
1,193,329	-		PFLU_RS05355	0.78	+1.8
1,193,329	-		PFLU_RS05355	0.78	-1.9
1,193,331	+		PFLU_RS05355	0.79	-3.3
1,193,331	+		PFLU_RS05355	0.79	+0.1
1,193,331	+		PFLU_RS05355	0.79	-1.2
1,193,331	+		PFLU_RS05355	0.79	+0.9
1,193,331	+		PFLU_RS05355	0.79	+1.8
1,193,331	+		PFLU_RS05355	0.79	+1.8
1,193,331	+		PFLU_RS05355	0.79	+0.0
1,193,331	+		PFLU_RS05355	0.79	-0.1
1,193,331	+		PFLU_RS05355	0.79	-2.3
1,193,331	+		PFLU_RS05355	0.79	-2.1
1,193,331	+		PFLU_RS05355	0.79	-3.3
1,193,331	+		PFLU_RS05355	0.79	-0.7
1,193,331	+		PFLU_RS05355	0.79	+0.7
1,193,331	+		PFLU_RS05355	0.79	-1.6
1,193,331	+		PFLU_RS05355	0.79	-1.4
1,193,331	+		PFLU_RS05355	0.79	-2.6
1,193,331	+		PFLU_RS05355	0.79	-1.4
1,193,331	+		PFLU_RS05355	0.79	+0.9
1,193,331	+		PFLU_RS05355	0.79	+1.1
1,193,331	+		PFLU_RS05355	0.79	+1.9
1,193,331	+		PFLU_RS05355	0.79	+3.0
1,193,331	+		PFLU_RS05355	0.79	+0.6
1,193,332	-		PFLU_RS05355	0.79	-0.4
1,193,332	-		PFLU_RS05355	0.79	+1.8
1,193,332	-		PFLU_RS05355	0.79	-1.2
1,193,332	-		PFLU_RS05355	0.79	-0.6
1,193,332	-		PFLU_RS05355	0.79	-2.3
1,193,332	-		PFLU_RS05355	0.79	+0.9
1,193,332	-		PFLU_RS05355	0.79	+3.0
1,193,332	-		PFLU_RS05355	0.79	+0.2
1,193,332	-		PFLU_RS05355	0.79	-2.9
1,193,332	-		PFLU_RS05355	0.79	-1.9
1,193,332	-		PFLU_RS05355	0.79	+0.6
1,193,332	-		PFLU_RS05355	0.79	-0.4
1,193,332	-		PFLU_RS05355	0.79	+1.3
1,193,385	+		PFLU_RS05355	0.83	+2.5
1,193,385	+		PFLU_RS05355	0.83	-2.1
1,193,386	-		PFLU_RS05355	0.83	+0.4
1,193,386	-		PFLU_RS05355	0.83	-1.0
1,193,386	-		PFLU_RS05355	0.83	-1.0
1,193,392	-		PFLU_RS05355	0.84	-1.0
1,193,392	-		PFLU_RS05355	0.84	+1.7
1,193,478	+				+0.3
1,193,478	+				+1.8
1,193,478	+				+1.4
1,193,478	+				-0.9
1,193,478	+				+0.2
1,193,478	+				+2.1
1,193,478	+				+3.7
1,193,478	+				-0.4
1,193,478	+				-0.9
1,193,478	+				-1.6
1,193,478	+				-1.2
1,193,478	+				+2.4
1,193,478	+				+1.4
1,193,478	+				+1.2
1,193,478	+				+0.1
1,193,478	+				-0.7
1,193,478	+				+1.1
1,193,478	+				-3.3
1,193,479	-				-1.9
1,193,479	-				+5.0
1,193,479	-				-0.2
1,193,479	-				-2.9
1,193,479	-				-0.8
1,193,479	-				-1.3
1,193,479	-				-0.7
1,193,479	-				-0.4
1,193,479	-				+0.7
1,193,479	-				+2.5
1,193,498	+				-3.4
1,193,498	+				+0.9
1,193,499	-				-1.4
1,193,499	-				-2.4
1,193,531	+				-1.8
1,193,531	+				+0.6
1,193,531	+				+0.3
1,193,531	+				-2.0
1,193,531	+				-0.1
1,193,531	+				-2.4
1,193,531	+				+1.1
1,193,531	+				-0.7
1,193,531	+				+1.2
1,193,531	+				-2.1
1,193,532	-				-0.4
1,193,532	-				-1.4
1,193,532	-				+2.1
1,193,532	-				+1.0
1,193,532	-				+2.1
1,193,532	-				-1.7
1,193,532	-				+1.3
1,193,532	-				-2.2
1,193,532	-				+0.1
1,193,532	-				-0.0
1,193,535	+				+0.6
1,193,535	+				+1.5
1,193,535	+				+1.3
1,193,535	+				-1.2
1,193,535	+				-1.3
1,193,535	+				+0.1
1,193,535	+				-1.9
1,193,535	+				-2.7
1,193,535	+				-0.9
1,193,536	-				-1.9
1,193,536	-				+0.5
1,193,536	-				-0.7
1,193,536	-				-2.5
1,193,536	-				+1.1
1,193,536	-				-2.9
1,193,536	-				-2.2
1,193,536	-				+0.0
1,193,562	-				+2.9
1,193,562	-				+0.1
1,193,592	+				-2.9
1,193,592	+				+0.2
1,193,592	+				+1.3
1,193,592	+				-2.2
1,193,592	+				-1.3
1,193,593	-				-2.6
1,193,593	-				+2.1
1,193,593	-				+1.8
1,193,593	-				+0.5
1,193,593	-				+1.0
1,193,593	-				-1.6
1,193,593	-				+0.9
1,193,698	-				+1.4
1,193,698	-				-1.9
1,193,698	-				+1.8
1,193,698	-				+2.0
1,193,698	-				-0.8
1,193,698	-				-1.2
1,193,698	-				+1.8
1,193,743	+				-2.5
1,193,743	+				-2.1
1,193,743	+				-1.7
1,193,744	-				+0.9
1,193,744	-				+1.4
1,193,744	-				+0.4
1,193,754	+				-1.6
1,193,754	+				+1.6
1,193,754	+				-2.7
1,193,754	+				+1.8
1,193,754	+				+1.0
1,193,755	-				-2.7
1,193,755	-				+1.4
1,193,755	-				-2.4
1,193,755	-				+0.3
1,193,755	-				+0.3
1,193,760	-				-1.9
1,193,760	-				+3.7
1,193,760	-				-0.8
1,193,760	-				-0.7
1,193,760	-				-1.0
1,193,802	-				-1.4
1,193,802	-				+0.8
1,193,802	-				+0.7
1,193,802	-				+0.7
1,193,802	-				+0.1
1,193,802	-				-2.8
1,193,802	-				+0.2
1,193,802	-				+1.1
1,193,866	+				+1.0
1,193,866	+				+0.3
1,193,866	+				+2.1
1,193,866	+				+0.1
1,193,866	+				+0.1
1,193,866	+				-3.3
1,193,877	+				-0.9
1,193,877	+				+1.1
1,193,877	+				-1.3
1,193,877	+				-0.1
1,193,877	+				+1.6
1,193,877	+				-0.6
1,193,877	+				+1.1
1,193,877	+				-0.1
1,193,877	+				+0.6
1,193,878	-				+0.4
1,193,878	-				-1.6
1,193,878	-				-1.3
1,193,878	-				-1.2
1,193,878	-				+0.3
1,193,878	-				+1.5
1,193,983	+				-1.0
1,193,984	-				+2.1
1,193,999	+				+0.4
1,193,999	+				-0.2
1,193,999	+				-1.5
1,194,000	-				-0.3
1,194,000	-				+1.1
1,194,030	+				-1.0
1,194,031	-				-0.2
1,194,177	+				-1.9
1,194,177	+				-1.8
1,194,202	+				-0.7
1,194,203	-				+1.1
1,194,206	+				+1.9
1,194,206	+				+0.1
1,194,206	+				+0.6
1,194,206	+				+1.8
1,194,206	+				+1.9
1,194,206	+				-0.7
1,194,206	+				-0.4
1,194,206	+				+1.4
1,194,206	+				+2.0
1,194,206	+				-2.0
1,194,206	+				-0.2
1,194,206	+				+1.2
1,194,206	+				-1.2
1,194,206	+				+0.3
1,194,206	+				+1.7
1,194,207	-				-2.1
1,194,207	-				-0.7
1,194,207	-				-0.1
1,194,207	-				-0.4
1,194,207	-				-0.7
1,194,207	-				-2.4
1,194,207	-				+0.6
1,194,207	-				-1.0
1,194,207	-				-0.9
1,194,207	-				+0.3
1,194,207	-				-0.9
1,194,207	-				+0.8
1,194,207	-				-2.6
1,194,447	+		PFLU_RS05360	0.14	+2.5
1,194,447	+		PFLU_RS05360	0.14	+1.1
1,194,447	+		PFLU_RS05360	0.14	-1.0
1,194,448	-		PFLU_RS05360	0.14	-1.3