Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17225

Experiment: L-Isoleucine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Isoleucine (C)
3,917,422	+		PFLU_RS17220	0.42	+1.1
3,917,422	+		PFLU_RS17220	0.42	+1.2
3,917,422	+		PFLU_RS17220	0.42	+3.5
3,917,422	+		PFLU_RS17220	0.42	-1.9
3,917,422	+		PFLU_RS17220	0.42	+1.5
3,917,422	+		PFLU_RS17220	0.42	+1.5
3,917,422	+		PFLU_RS17220	0.42	-1.5
3,917,423	-		PFLU_RS17220	0.42	+0.7
3,917,423	-		PFLU_RS17220	0.42	-2.5
3,917,423	-		PFLU_RS17220	0.42	+2.4
3,917,423	-		PFLU_RS17220	0.42	+0.9
3,917,423	-		PFLU_RS17220	0.42	+1.6
3,917,426	+		PFLU_RS17220	0.42	-0.3
3,917,426	+		PFLU_RS17220	0.42	-2.2
3,917,426	+		PFLU_RS17220	0.42	-0.1
3,917,426	+		PFLU_RS17220	0.42	+0.5
3,917,426	+		PFLU_RS17220	0.42	+1.5
3,917,427	-		PFLU_RS17220	0.42	+2.9
3,917,427	-		PFLU_RS17220	0.42	+2.0
3,917,427	-		PFLU_RS17220	0.42	+1.4
3,917,427	-		PFLU_RS17220	0.42	+0.0
3,917,427	-		PFLU_RS17220	0.42	+0.2
3,917,427	-		PFLU_RS17220	0.42	-0.5
3,917,427	-		PFLU_RS17220	0.42	-2.1
3,917,427	-		PFLU_RS17220	0.42	-0.9
3,917,431	+		PFLU_RS17220	0.43	-0.4
3,917,431	+		PFLU_RS17220	0.43	+1.1
3,917,431	+		PFLU_RS17220	0.43	-3.1
3,917,431	+		PFLU_RS17220	0.43	-2.2
3,917,431	+		PFLU_RS17220	0.43	-0.1
3,917,432	-		PFLU_RS17220	0.43	-1.1
3,917,432	-		PFLU_RS17220	0.43	-1.9
3,917,432	-		PFLU_RS17220	0.43	+0.0
3,917,432	-		PFLU_RS17220	0.43	+0.5
3,917,432	-		PFLU_RS17220	0.43	-0.9
3,917,432	-		PFLU_RS17220	0.43	-1.1
3,917,432	-		PFLU_RS17220	0.43	-1.1
3,917,432	-		PFLU_RS17220	0.43	+2.1
3,917,432	-		PFLU_RS17220	0.43	+4.0
3,917,467	+		PFLU_RS17220	0.45	+2.8
3,917,468	-		PFLU_RS17220	0.45	+1.9
3,917,483	+		PFLU_RS17220	0.46	+3.3
3,917,483	+		PFLU_RS17220	0.46	+2.6
3,917,484	-		PFLU_RS17220	0.46	-0.3
3,917,484	-		PFLU_RS17220	0.46	+0.5
3,917,885	+		PFLU_RS17220	0.74	+2.2
3,917,949	-		PFLU_RS17220	0.78	-1.2
3,917,949	-		PFLU_RS17220	0.78	+0.1
3,917,987	-		PFLU_RS17220	0.81	-1.5
3,918,007	+		PFLU_RS17220	0.82	+0.6
3,918,007	+		PFLU_RS17220	0.82	+1.8
3,918,007	+		PFLU_RS17220	0.82	+1.5
3,918,007	+		PFLU_RS17220	0.82	+1.5
3,918,007	+		PFLU_RS17220	0.82	-0.1
3,918,007	+		PFLU_RS17220	0.82	+1.7
3,918,007	+		PFLU_RS17220	0.82	-1.5
3,918,007	+		PFLU_RS17220	0.82	-0.9
3,918,007	+		PFLU_RS17220	0.82	+0.8
3,918,007	+		PFLU_RS17220	0.82	-1.0
3,918,007	+		PFLU_RS17220	0.82	-1.3
3,918,007	+		PFLU_RS17220	0.82	+4.0
3,918,007	+		PFLU_RS17220	0.82	-2.3
3,918,007	+		PFLU_RS17220	0.82	+0.9
3,918,007	+		PFLU_RS17220	0.82	-0.2
3,918,008	-		PFLU_RS17220	0.82	-2.0
3,918,008	-		PFLU_RS17220	0.82	-1.9
3,918,008	-		PFLU_RS17220	0.82	-0.1
3,918,008	-		PFLU_RS17220	0.82	+1.2
3,918,008	-		PFLU_RS17220	0.82	-0.5
3,918,008	-		PFLU_RS17220	0.82	-0.5
3,918,008	-		PFLU_RS17220	0.82	+0.7
3,918,008	-		PFLU_RS17220	0.82	+0.2
3,918,008	-		PFLU_RS17220	0.82	-0.9
3,918,008	-		PFLU_RS17220	0.82	-0.3
3,918,008	-		PFLU_RS17220	0.82	-1.5
3,918,008	-		PFLU_RS17220	0.82	+0.6
3,918,008	-		PFLU_RS17220	0.82	+1.9
3,918,008	-		PFLU_RS17220	0.82	-1.3
3,918,029	-		PFLU_RS17220	0.84	+2.1
3,918,088	+		PFLU_RS17220	0.88	+2.9
3,918,089	-		PFLU_RS17220	0.88	-1.3
3,918,089	-		PFLU_RS17220	0.88	-1.3
3,918,089	-		PFLU_RS17220	0.88	+0.2
3,918,089	-		PFLU_RS17220	0.88	+0.3
3,918,157	+				+1.0
3,918,158	-				-2.0
3,918,158	-				-1.3
3,918,186	+				+2.5
3,918,254	+				-0.1
3,918,254	+				-1.3
3,918,254	+				-0.5
3,918,254	+				+0.4
3,918,254	+				+0.1
3,918,254	+				+0.8
3,918,254	+				-1.2
3,918,255	-				-1.3
3,918,255	-				-0.1
3,918,255	-				+2.1
3,918,255	-				+3.1
3,918,255	-				+0.0
3,918,255	-				+2.1
3,918,257	+				-2.0
3,918,257	+				-0.1
3,918,257	+				-0.1
3,918,258	-				-1.5
3,918,258	-				+2.1
3,918,258	-				-1.7
3,918,258	-				-0.1
3,918,258	-				-1.3
3,918,258	-				-0.5
3,918,275	+				-0.3
3,918,275	+				+0.6
3,918,275	+				+1.0
3,918,275	+				-1.9
3,918,275	+				-1.2
3,918,275	+				-0.3
3,918,276	-				-1.3
3,918,281	+				+1.7
3,918,281	+				+0.1
3,918,281	+				+0.9
3,918,281	+				+2.6
3,918,281	+				-0.2
3,918,281	+				+1.9
3,918,282	-				-0.4
3,918,282	-				+0.5
3,918,282	-				+1.3
3,918,282	-				+0.1
3,918,282	-				-2.2
3,918,282	-				+1.7
3,918,282	-				-0.6
3,918,282	-				-0.1
3,918,282	-				+1.7
3,918,282	-				-0.0
3,918,389	+				+0.5
3,918,389	+				-1.5
3,918,390	-				+0.8
3,918,390	-				-0.7
3,918,390	-				-0.9
3,918,390	-				+0.7
3,918,465	+		PFLU_RS17225	0.13	+3.5
3,918,466	-		PFLU_RS17225	0.14	+0.0
3,918,466	-		PFLU_RS17225	0.14	-2.1
3,918,568	+		PFLU_RS17225	0.34	-0.1
3,918,568	+		PFLU_RS17225	0.34	-0.5
3,918,569	-		PFLU_RS17225	0.34	-0.7
3,918,638	+		PFLU_RS17225	0.48	-0.1
3,918,639	-		PFLU_RS17225	0.48	+1.9
3,918,773	+		PFLU_RS17225	0.76	-0.3
3,918,773	+		PFLU_RS17225	0.76	-0.1
3,918,773	+		PFLU_RS17225	0.76	+0.1
3,918,773	+		PFLU_RS17225	0.76	-0.6
3,918,774	-		PFLU_RS17225	0.76	-2.0
3,918,774	-		PFLU_RS17225	0.76	+0.7
3,918,815	+		PFLU_RS17225	0.84	-2.2
3,918,815	+		PFLU_RS17225	0.84	-1.0
3,918,815	+		PFLU_RS17225	0.84	-0.1
3,918,815	+		PFLU_RS17225	0.84	-0.5
3,918,815	+		PFLU_RS17225	0.84	+2.8
3,918,815	+		PFLU_RS17225	0.84	-1.9
3,918,815	+		PFLU_RS17225	0.84	-0.9
3,918,815	+		PFLU_RS17225	0.84	-0.4
3,918,815	+		PFLU_RS17225	0.84	-2.3
3,918,815	+		PFLU_RS17225	0.84	+2.3
3,918,815	+		PFLU_RS17225	0.84	-1.5
3,918,815	+		PFLU_RS17225	0.84	+1.5
3,918,816	-		PFLU_RS17225	0.84	-1.1
3,918,816	-		PFLU_RS17225	0.84	-2.0
3,918,816	-		PFLU_RS17225	0.84	+1.7
3,918,816	-		PFLU_RS17225	0.84	+0.5
3,918,816	-		PFLU_RS17225	0.84	+0.3
3,918,816	-		PFLU_RS17225	0.84	-2.1
3,918,816	-		PFLU_RS17225	0.84	-0.3
3,918,816	-		PFLU_RS17225	0.84	-0.4
3,918,816	-		PFLU_RS17225	0.84	-2.2
3,918,816	-		PFLU_RS17225	0.84	+1.8
3,918,817	+		PFLU_RS17225	0.84	-1.1
3,918,817	+		PFLU_RS17225	0.84	-0.4
3,918,817	+		PFLU_RS17225	0.84	-1.1
3,918,817	+		PFLU_RS17225	0.84	-0.0
3,918,817	+		PFLU_RS17225	0.84	-0.5
3,918,817	+		PFLU_RS17225	0.84	-0.5
3,918,817	+		PFLU_RS17225	0.84	+0.5
3,918,817	+		PFLU_RS17225	0.84	+0.3
3,918,818	-		PFLU_RS17225	0.85	-2.2
3,918,818	-		PFLU_RS17225	0.85	-1.0
3,918,818	-		PFLU_RS17225	0.85	-1.9
3,918,818	-		PFLU_RS17225	0.85	-1.7
3,918,818	-		PFLU_RS17225	0.85	-2.5
3,918,911	+				-0.3
3,918,911	+				-1.3
3,918,911	+				-0.2
3,918,937	-				-0.1
3,919,005	+				-1.0
3,919,006	-				-2.1
3,919,006	-				+0.1
3,919,027	+				-0.9
3,919,027	+				+0.9
3,919,027	+				-0.1
3,919,027	+				-1.9
3,919,027	+				+1.1
3,919,028	-				-1.3
3,919,239	+		PFLU_RS17230	0.43	-0.1
3,919,239	+		PFLU_RS17230	0.43	-1.7
3,919,240	-		PFLU_RS17230	0.43	-1.0
3,919,240	-		PFLU_RS17230	0.43	+1.5
3,919,240	-		PFLU_RS17230	0.43	+1.3
3,919,240	-		PFLU_RS17230	0.43	-2.4
3,919,240	-		PFLU_RS17230	0.43	-0.5
3,919,242	+		PFLU_RS17230	0.44	+1.1
3,919,242	+		PFLU_RS17230	0.44	+2.4
3,919,242	+		PFLU_RS17230	0.44	+2.5
3,919,242	+		PFLU_RS17230	0.44	+0.9
3,919,242	+		PFLU_RS17230	0.44	+0.5
3,919,243	-		PFLU_RS17230	0.44	-0.1
3,919,322	+		PFLU_RS17230	0.60	-1.6
3,919,322	+		PFLU_RS17230	0.60	+0.2
3,919,322	+		PFLU_RS17230	0.60	+0.0
3,919,322	+		PFLU_RS17230	0.60	+1.5
3,919,323	-		PFLU_RS17230	0.60	+0.0
3,919,323	-		PFLU_RS17230	0.60	-2.9
3,919,323	-		PFLU_RS17230	0.60	+0.9
3,919,323	-		PFLU_RS17230	0.60	+4.7
3,919,412	+		PFLU_RS17230	0.78	-1.3
3,919,413	-		PFLU_RS17230	0.78	-1.1
3,919,413	-		PFLU_RS17230	0.78	+0.7
3,919,459	+		PFLU_RS17230	0.87	+3.0
3,919,485	+				-1.9
3,919,485	+				+2.3
3,919,486	-				+0.6
3,919,525	+				+1.8
3,919,525	+				-0.8
3,919,525	+				-0.1
3,919,526	-				-0.7
3,919,526	-				-2.3
3,919,526	-				+0.5
3,919,526	-				+1.6
3,919,526	-				+1.3
3,919,526	-				-1.7
3,919,526	-				+1.5
3,919,526	-				+1.5
3,919,526	-				+1.8
3,919,526	-				+0.1
3,919,526	-				+0.1
3,919,526	-				-0.3
3,919,539	+				-0.9
3,919,539	+				-0.5
3,919,544	-				-0.4
3,919,655	+				-2.2
3,919,656	-				+1.7
3,919,666	-				-1.7
3,919,679	+				+1.0
3,919,679	+				-1.3
3,919,679	+				-2.2
3,919,691	+				-0.1
3,919,784	+		PFLU_RS17235	0.10	+0.5
3,919,784	+		PFLU_RS17235	0.10	+2.5
3,919,785	-		PFLU_RS17235	0.10	-1.3
3,919,785	-		PFLU_RS17235	0.10	+1.0
3,919,785	-		PFLU_RS17235	0.10	-1.3
3,919,785	-		PFLU_RS17235	0.10	+0.1
3,919,794	-		PFLU_RS17235	0.11	+1.5
3,919,794	-		PFLU_RS17235	0.11	+1.5
3,919,794	-		PFLU_RS17235	0.11	+0.2
3,919,823	+		PFLU_RS17235	0.13	-1.0
3,919,866	-		PFLU_RS17235	0.17	+1.8
3,919,869	+		PFLU_RS17235	0.17	+0.2
3,919,870	-		PFLU_RS17235	0.17	-0.9