Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24165

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS24160 and PFLU_RS24165 are separated by 2 nucleotidesPFLU_RS24165 and PFLU_RS24170 are separated by 162 nucleotides PFLU_RS24160: PFLU_RS24160 - HAMP domain-containing protein, at 5,405,889 to 5,407,925 _RS24160 PFLU_RS24165: PFLU_RS24165 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 5,407,928 to 5,408,506 _RS24165 PFLU_RS24170: PFLU_RS24170 - Nudix family hydrolase, at 5,408,669 to 5,409,613 _RS24170 Position (kb) 5407 5408 5409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5407.002 kb on + strand, within PFLU_RS24160at 5407.003 kb on - strand, within PFLU_RS24160at 5407.003 kb on - strand, within PFLU_RS24160at 5407.003 kb on - strand, within PFLU_RS24160at 5407.003 kb on - strand, within PFLU_RS24160at 5407.017 kb on + strand, within PFLU_RS24160at 5407.017 kb on + strand, within PFLU_RS24160at 5407.017 kb on + strand, within PFLU_RS24160at 5407.017 kb on + strand, within PFLU_RS24160at 5407.018 kb on - strand, within PFLU_RS24160at 5407.018 kb on - strand, within PFLU_RS24160at 5407.018 kb on - strand, within PFLU_RS24160at 5407.322 kb on + strand, within PFLU_RS24160at 5407.364 kb on + strand, within PFLU_RS24160at 5407.364 kb on + strand, within PFLU_RS24160at 5407.364 kb on + strand, within PFLU_RS24160at 5407.364 kb on + strand, within PFLU_RS24160at 5407.364 kb on + strand, within PFLU_RS24160at 5407.365 kb on - strand, within PFLU_RS24160at 5407.365 kb on - strand, within PFLU_RS24160at 5407.365 kb on - strand, within PFLU_RS24160at 5407.365 kb on - strand, within PFLU_RS24160at 5407.414 kb on + strand, within PFLU_RS24160at 5407.578 kb on - strand, within PFLU_RS24160at 5407.722 kb on - strandat 5407.722 kb on - strandat 5407.789 kb on - strandat 5407.859 kb on + strandat 5407.859 kb on + strandat 5407.859 kb on + strandat 5407.859 kb on + strandat 5407.859 kb on + strandat 5407.860 kb on - strandat 5407.952 kb on + strandat 5407.953 kb on - strandat 5408.081 kb on + strand, within PFLU_RS24165at 5408.082 kb on - strand, within PFLU_RS24165at 5408.133 kb on + strand, within PFLU_RS24165at 5408.133 kb on + strand, within PFLU_RS24165at 5408.134 kb on - strand, within PFLU_RS24165at 5408.134 kb on - strand, within PFLU_RS24165at 5408.134 kb on - strand, within PFLU_RS24165at 5408.134 kb on - strand, within PFLU_RS24165at 5408.192 kb on + strand, within PFLU_RS24165at 5408.193 kb on - strand, within PFLU_RS24165at 5408.193 kb on - strand, within PFLU_RS24165at 5408.193 kb on - strand, within PFLU_RS24165at 5408.193 kb on - strand, within PFLU_RS24165at 5408.193 kb on - strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.402 kb on + strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.403 kb on - strand, within PFLU_RS24165at 5408.404 kb on + strand, within PFLU_RS24165at 5408.404 kb on + strand, within PFLU_RS24165at 5408.404 kb on + strand, within PFLU_RS24165at 5408.404 kb on + strand, within PFLU_RS24165at 5408.404 kb on + strand, within PFLU_RS24165at 5408.405 kb on - strand, within PFLU_RS24165at 5408.405 kb on - strand, within PFLU_RS24165at 5408.405 kb on - strand, within PFLU_RS24165at 5408.425 kb on - strand, within PFLU_RS24165at 5408.425 kb on - strand, within PFLU_RS24165at 5408.425 kb on - strand, within PFLU_RS24165at 5408.466 kb on + strandat 5408.467 kb on - strandat 5408.467 kb on - strandat 5408.504 kb on + strandat 5408.505 kb on - strandat 5408.505 kb on - strandat 5408.513 kb on - strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.657 kb on + strandat 5408.670 kb on + strandat 5408.670 kb on + strandat 5408.671 kb on - strandat 5408.751 kb on - strandat 5408.962 kb on + strand, within PFLU_RS24170at 5408.962 kb on + strand, within PFLU_RS24170at 5408.963 kb on - strand, within PFLU_RS24170at 5408.963 kb on - strand, within PFLU_RS24170at 5408.970 kb on + strand, within PFLU_RS24170at 5408.970 kb on + strand, within PFLU_RS24170at 5408.970 kb on + strand, within PFLU_RS24170at 5408.971 kb on - strand, within PFLU_RS24170at 5408.971 kb on - strand, within PFLU_RS24170at 5408.971 kb on - strand, within PFLU_RS24170at 5408.971 kb on - strand, within PFLU_RS24170at 5408.974 kb on + strand, within PFLU_RS24170at 5408.974 kb on + strand, within PFLU_RS24170at 5408.974 kb on + strand, within PFLU_RS24170at 5408.975 kb on - strand, within PFLU_RS24170at 5408.975 kb on - strand, within PFLU_RS24170at 5408.975 kb on - strand, within PFLU_RS24170at 5408.975 kb on - strand, within PFLU_RS24170at 5408.975 kb on - strand, within PFLU_RS24170at 5408.975 kb on - strand, within PFLU_RS24170at 5409.102 kb on + strand, within PFLU_RS24170at 5409.103 kb on - strand, within PFLU_RS24170at 5409.219 kb on + strand, within PFLU_RS24170at 5409.220 kb on - strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.276 kb on + strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.277 kb on - strand, within PFLU_RS24170at 5409.343 kb on + strand, within PFLU_RS24170at 5409.390 kb on + strand, within PFLU_RS24170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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5,407,002 + PFLU_RS24160 0.55 -0.1
5,407,003 - PFLU_RS24160 0.55 -0.4
5,407,003 - PFLU_RS24160 0.55 -0.6
5,407,003 - PFLU_RS24160 0.55 +0.4
5,407,003 - PFLU_RS24160 0.55 +0.4
5,407,017 + PFLU_RS24160 0.55 +0.4
5,407,017 + PFLU_RS24160 0.55 +0.9
5,407,017 + PFLU_RS24160 0.55 -0.4
5,407,017 + PFLU_RS24160 0.55 +0.4
5,407,018 - PFLU_RS24160 0.55 +0.4
5,407,018 - PFLU_RS24160 0.55 +0.9
5,407,018 - PFLU_RS24160 0.55 -1.2
5,407,322 + PFLU_RS24160 0.70 +0.4
5,407,364 + PFLU_RS24160 0.72 +1.9
5,407,364 + PFLU_RS24160 0.72 +0.9
5,407,364 + PFLU_RS24160 0.72 +0.4
5,407,364 + PFLU_RS24160 0.72 +0.4
5,407,364 + PFLU_RS24160 0.72 -0.6
5,407,365 - PFLU_RS24160 0.72 +0.9
5,407,365 - PFLU_RS24160 0.72 +0.9
5,407,365 - PFLU_RS24160 0.72 -0.9
5,407,365 - PFLU_RS24160 0.72 +0.4
5,407,414 + PFLU_RS24160 0.75 -0.9
5,407,578 - PFLU_RS24160 0.83 +0.4
5,407,722 - -0.1
5,407,722 - -0.4
5,407,789 - +0.4
5,407,859 + +0.9
5,407,859 + +0.4
5,407,859 + -0.9
5,407,859 + +0.9
5,407,859 + -0.1
5,407,860 - +1.9
5,407,952 + -0.4
5,407,953 - +1.6
5,408,081 + PFLU_RS24165 0.26 +0.7
5,408,082 - PFLU_RS24165 0.27 -0.1
5,408,133 + PFLU_RS24165 0.35 -0.5
5,408,133 + PFLU_RS24165 0.35 -0.9
5,408,134 - PFLU_RS24165 0.36 +0.1
5,408,134 - PFLU_RS24165 0.36 -1.8
5,408,134 - PFLU_RS24165 0.36 -2.8
5,408,134 - PFLU_RS24165 0.36 -0.9
5,408,192 + PFLU_RS24165 0.46 -1.9
5,408,193 - PFLU_RS24165 0.46 -0.3
5,408,193 - PFLU_RS24165 0.46 +1.4
5,408,193 - PFLU_RS24165 0.46 -0.6
5,408,193 - PFLU_RS24165 0.46 -1.2
5,408,193 - PFLU_RS24165 0.46 -1.6
5,408,402 + PFLU_RS24165 0.82 +0.2
5,408,402 + PFLU_RS24165 0.82 -0.9
5,408,402 + PFLU_RS24165 0.82 -0.9
5,408,402 + PFLU_RS24165 0.82 +0.6
5,408,402 + PFLU_RS24165 0.82 +0.1
5,408,402 + PFLU_RS24165 0.82 +0.0
5,408,402 + PFLU_RS24165 0.82 -1.9
5,408,402 + PFLU_RS24165 0.82 +0.3
5,408,402 + PFLU_RS24165 0.82 +0.9
5,408,402 + PFLU_RS24165 0.82 -1.5
5,408,402 + PFLU_RS24165 0.82 -0.6
5,408,402 + PFLU_RS24165 0.82 +0.5
5,408,402 + PFLU_RS24165 0.82 -1.6
5,408,402 + PFLU_RS24165 0.82 -2.0
5,408,403 - PFLU_RS24165 0.82 -0.4
5,408,403 - PFLU_RS24165 0.82 +2.5
5,408,403 - PFLU_RS24165 0.82 -1.9
5,408,403 - PFLU_RS24165 0.82 +0.9
5,408,403 - PFLU_RS24165 0.82 -1.1
5,408,403 - PFLU_RS24165 0.82 +1.1
5,408,403 - PFLU_RS24165 0.82 -1.6
5,408,403 - PFLU_RS24165 0.82 -1.2
5,408,403 - PFLU_RS24165 0.82 -2.1
5,408,403 - PFLU_RS24165 0.82 +1.3
5,408,403 - PFLU_RS24165 0.82 -2.4
5,408,403 - PFLU_RS24165 0.82 -0.6
5,408,403 - PFLU_RS24165 0.82 +0.9
5,408,404 + PFLU_RS24165 0.82 -0.5
5,408,404 + PFLU_RS24165 0.82 -1.2
5,408,404 + PFLU_RS24165 0.82 +0.9
5,408,404 + PFLU_RS24165 0.82 -0.4
5,408,404 + PFLU_RS24165 0.82 +0.2
5,408,405 - PFLU_RS24165 0.82 +0.5
5,408,405 - PFLU_RS24165 0.82 +1.2
5,408,405 - PFLU_RS24165 0.82 +0.6
5,408,425 - PFLU_RS24165 0.86 -0.5
5,408,425 - PFLU_RS24165 0.86 -1.4
5,408,425 - PFLU_RS24165 0.86 -1.1
5,408,466 + +0.4
5,408,467 - +0.2
5,408,467 - -0.5
5,408,504 + -0.3
5,408,505 - -0.1
5,408,505 - +0.3
5,408,513 - +0.1
5,408,657 + -2.1
5,408,657 + +1.9
5,408,657 + -2.1
5,408,657 + +2.5
5,408,657 + -0.9
5,408,657 + -0.2
5,408,657 + +4.3
5,408,657 + -1.2
5,408,657 + -1.6
5,408,657 + -1.8
5,408,657 + +0.1
5,408,657 + +1.4
5,408,670 + +0.9
5,408,670 + +1.4
5,408,671 - +0.5
5,408,751 - -0.6
5,408,962 + PFLU_RS24170 0.31 +0.8
5,408,962 + PFLU_RS24170 0.31 -1.9
5,408,963 - PFLU_RS24170 0.31 -0.4
5,408,963 - PFLU_RS24170 0.31 -0.6
5,408,970 + PFLU_RS24170 0.32 +0.2
5,408,970 + PFLU_RS24170 0.32 -1.1
5,408,970 + PFLU_RS24170 0.32 -2.0
5,408,971 - PFLU_RS24170 0.32 -2.5
5,408,971 - PFLU_RS24170 0.32 -2.1
5,408,971 - PFLU_RS24170 0.32 -2.0
5,408,971 - PFLU_RS24170 0.32 +0.1
5,408,974 + PFLU_RS24170 0.32 -2.7
5,408,974 + PFLU_RS24170 0.32 +0.7
5,408,974 + PFLU_RS24170 0.32 -0.1
5,408,975 - PFLU_RS24170 0.32 -0.4
5,408,975 - PFLU_RS24170 0.32 -1.6
5,408,975 - PFLU_RS24170 0.32 -3.0
5,408,975 - PFLU_RS24170 0.32 -1.3
5,408,975 - PFLU_RS24170 0.32 -2.1
5,408,975 - PFLU_RS24170 0.32 -0.6
5,409,102 + PFLU_RS24170 0.46 -1.0
5,409,103 - PFLU_RS24170 0.46 -1.5
5,409,219 + PFLU_RS24170 0.58 +1.2
5,409,220 - PFLU_RS24170 0.58 -2.1
5,409,276 + PFLU_RS24170 0.64 -1.2
5,409,276 + PFLU_RS24170 0.64 -0.9
5,409,276 + PFLU_RS24170 0.64 -1.6
5,409,276 + PFLU_RS24170 0.64 -1.1
5,409,276 + PFLU_RS24170 0.64 -1.2
5,409,276 + PFLU_RS24170 0.64 +0.1
5,409,276 + PFLU_RS24170 0.64 +1.8
5,409,276 + PFLU_RS24170 0.64 -0.1
5,409,277 - PFLU_RS24170 0.64 -2.0
5,409,277 - PFLU_RS24170 0.64 +0.3
5,409,277 - PFLU_RS24170 0.64 -1.2
5,409,277 - PFLU_RS24170 0.64 -1.2
5,409,277 - PFLU_RS24170 0.64 -2.4
5,409,277 - PFLU_RS24170 0.64 -2.4
5,409,277 - PFLU_RS24170 0.64 -1.0
5,409,277 - PFLU_RS24170 0.64 -1.4
5,409,343 + PFLU_RS24170 0.71 +1.7
5,409,390 + PFLU_RS24170 0.76 -0.2

Or see this region's nucleotide sequence