Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20020

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20015 and PFLU_RS20020 are separated by 6 nucleotidesPFLU_RS20020 and PFLU_RS20025 are separated by 37 nucleotidesPFLU_RS20025 and PFLU_RS20030 are separated by 2 nucleotides PFLU_RS20015: PFLU_RS20015 - transporter, at 4,529,734 to 4,531,134 _RS20015 PFLU_RS20020: PFLU_RS20020 - gamma-glutamyltransferase family protein, at 4,531,141 to 4,532,751 _RS20020 PFLU_RS20025: PFLU_RS20025 - amino acid ABC transporter ATP-binding protein, at 4,532,789 to 4,533,568 _RS20025 PFLU_RS20030: PFLU_RS20030 - amino acid ABC transporter permease, at 4,533,571 to 4,534,347 _RS20030 Position (kb) 4531 4532 4533Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4530.310 kb on + strand, within PFLU_RS20015at 4530.311 kb on - strand, within PFLU_RS20015at 4530.862 kb on + strand, within PFLU_RS20015at 4530.863 kb on - strand, within PFLU_RS20015at 4530.863 kb on - strand, within PFLU_RS20015at 4531.098 kb on - strandat 4531.129 kb on + strandat 4531.130 kb on - strandat 4531.142 kb on + strandat 4531.143 kb on - strandat 4531.143 kb on - strandat 4531.143 kb on - strandat 4531.148 kb on - strandat 4531.267 kb on - strandat 4531.333 kb on - strand, within PFLU_RS20020at 4531.333 kb on - strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.628 kb on + strand, within PFLU_RS20020at 4531.628 kb on + strand, within PFLU_RS20020at 4531.629 kb on - strand, within PFLU_RS20020at 4531.653 kb on + strand, within PFLU_RS20020at 4531.682 kb on + strand, within PFLU_RS20020at 4531.682 kb on + strand, within PFLU_RS20020at 4531.682 kb on + strand, within PFLU_RS20020at 4531.683 kb on - strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.764 kb on - strand, within PFLU_RS20020at 4531.764 kb on - strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.838 kb on + strand, within PFLU_RS20020at 4531.838 kb on + strand, within PFLU_RS20020at 4531.985 kb on + strand, within PFLU_RS20020at 4531.986 kb on - strand, within PFLU_RS20020at 4532.049 kb on - strand, within PFLU_RS20020at 4532.049 kb on - strand, within PFLU_RS20020at 4532.102 kb on + strand, within PFLU_RS20020at 4532.356 kb on - strand, within PFLU_RS20020at 4532.356 kb on - strand, within PFLU_RS20020at 4532.424 kb on - strand, within PFLU_RS20020at 4532.698 kb on + strandat 4532.698 kb on + strandat 4532.699 kb on - strandat 4532.699 kb on - strandat 4532.699 kb on - strandat 4532.699 kb on - strandat 4532.778 kb on + strandat 4532.779 kb on - strandat 4532.792 kb on + strandat 4532.953 kb on + strand, within PFLU_RS20025at 4532.953 kb on + strand, within PFLU_RS20025at 4533.473 kb on + strand, within PFLU_RS20025at 4533.473 kb on + strand, within PFLU_RS20025at 4533.474 kb on - strand, within PFLU_RS20025at 4533.716 kb on + strand, within PFLU_RS20030at 4533.716 kb on + strand, within PFLU_RS20030at 4533.716 kb on + strand, within PFLU_RS20030at 4533.717 kb on - strand, within PFLU_RS20030at 4533.717 kb on - strand, within PFLU_RS20030at 4533.717 kb on - strand, within PFLU_RS20030at 4533.734 kb on + strand, within PFLU_RS20030at 4533.734 kb on + strand, within PFLU_RS20030at 4533.734 kb on + strand, within PFLU_RS20030at 4533.735 kb on - strand, within PFLU_RS20030at 4533.735 kb on - strand, within PFLU_RS20030at 4533.735 kb on - strand, within PFLU_RS20030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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4,530,310 + PFLU_RS20015 0.41 -1.6
4,530,311 - PFLU_RS20015 0.41 +1.3
4,530,862 + PFLU_RS20015 0.81 +0.5
4,530,863 - PFLU_RS20015 0.81 +0.5
4,530,863 - PFLU_RS20015 0.81 -1.2
4,531,098 - -3.0
4,531,129 + -0.9
4,531,130 - -0.7
4,531,142 + +4.4
4,531,143 - -3.1
4,531,143 - -2.0
4,531,143 - +2.0
4,531,148 - -0.3
4,531,267 - +1.1
4,531,333 - PFLU_RS20020 0.12 +1.8
4,531,333 - PFLU_RS20020 0.12 -0.9
4,531,434 + PFLU_RS20020 0.18 +0.1
4,531,434 + PFLU_RS20020 0.18 +1.4
4,531,434 + PFLU_RS20020 0.18 -0.7
4,531,434 + PFLU_RS20020 0.18 +0.0
4,531,434 + PFLU_RS20020 0.18 -2.0
4,531,434 + PFLU_RS20020 0.18 -0.2
4,531,434 + PFLU_RS20020 0.18 +3.1
4,531,434 + PFLU_RS20020 0.18 +3.3
4,531,434 + PFLU_RS20020 0.18 +0.6
4,531,434 + PFLU_RS20020 0.18 +1.8
4,531,435 - PFLU_RS20020 0.18 +2.0
4,531,435 - PFLU_RS20020 0.18 -1.4
4,531,435 - PFLU_RS20020 0.18 +2.1
4,531,435 - PFLU_RS20020 0.18 -1.9
4,531,435 - PFLU_RS20020 0.18 -2.0
4,531,435 - PFLU_RS20020 0.18 -0.9
4,531,436 + PFLU_RS20020 0.18 +1.0
4,531,436 + PFLU_RS20020 0.18 +0.5
4,531,436 + PFLU_RS20020 0.18 +1.1
4,531,436 + PFLU_RS20020 0.18 -2.3
4,531,436 + PFLU_RS20020 0.18 +1.2
4,531,436 + PFLU_RS20020 0.18 -0.3
4,531,437 - PFLU_RS20020 0.18 -0.9
4,531,437 - PFLU_RS20020 0.18 -0.2
4,531,437 - PFLU_RS20020 0.18 -0.9
4,531,437 - PFLU_RS20020 0.18 -1.2
4,531,628 + PFLU_RS20020 0.30 -2.0
4,531,628 + PFLU_RS20020 0.30 -0.2
4,531,629 - PFLU_RS20020 0.30 +2.1
4,531,653 + PFLU_RS20020 0.32 -0.7
4,531,682 + PFLU_RS20020 0.34 +3.1
4,531,682 + PFLU_RS20020 0.34 -0.7
4,531,682 + PFLU_RS20020 0.34 -0.9
4,531,683 - PFLU_RS20020 0.34 +0.2
4,531,763 + PFLU_RS20020 0.39 +1.2
4,531,763 + PFLU_RS20020 0.39 +0.8
4,531,763 + PFLU_RS20020 0.39 -2.1
4,531,763 + PFLU_RS20020 0.39 -1.5
4,531,763 + PFLU_RS20020 0.39 +2.2
4,531,763 + PFLU_RS20020 0.39 -1.3
4,531,763 + PFLU_RS20020 0.39 +0.9
4,531,764 - PFLU_RS20020 0.39 +4.1
4,531,764 - PFLU_RS20020 0.39 +1.5
4,531,820 + PFLU_RS20020 0.42 +3.5
4,531,820 + PFLU_RS20020 0.42 -0.0
4,531,820 + PFLU_RS20020 0.42 -1.1
4,531,820 + PFLU_RS20020 0.42 +2.1
4,531,820 + PFLU_RS20020 0.42 -2.3
4,531,820 + PFLU_RS20020 0.42 -1.6
4,531,820 + PFLU_RS20020 0.42 +2.0
4,531,820 + PFLU_RS20020 0.42 +0.8
4,531,820 + PFLU_RS20020 0.42 +0.5
4,531,821 - PFLU_RS20020 0.42 +0.3
4,531,821 - PFLU_RS20020 0.42 +0.3
4,531,821 - PFLU_RS20020 0.42 +0.5
4,531,821 - PFLU_RS20020 0.42 -0.2
4,531,821 - PFLU_RS20020 0.42 -0.5
4,531,821 - PFLU_RS20020 0.42 -0.5
4,531,821 - PFLU_RS20020 0.42 -1.1
4,531,821 - PFLU_RS20020 0.42 +1.9
4,531,821 - PFLU_RS20020 0.42 +0.3
4,531,821 - PFLU_RS20020 0.42 +1.1
4,531,821 - PFLU_RS20020 0.42 +1.5
4,531,821 - PFLU_RS20020 0.42 -0.2
4,531,838 + PFLU_RS20020 0.43 +1.6
4,531,838 + PFLU_RS20020 0.43 +0.6
4,531,985 + PFLU_RS20020 0.52 -1.0
4,531,986 - PFLU_RS20020 0.52 +0.4
4,532,049 - PFLU_RS20020 0.56 +4.1
4,532,049 - PFLU_RS20020 0.56 +0.1
4,532,102 + PFLU_RS20020 0.60 -1.4
4,532,356 - PFLU_RS20020 0.75 -1.5
4,532,356 - PFLU_RS20020 0.75 +0.6
4,532,424 - PFLU_RS20020 0.80 -1.9
4,532,698 + +1.1
4,532,698 + -0.1
4,532,699 - -0.2
4,532,699 - -1.6
4,532,699 - +0.5
4,532,699 - +0.4
4,532,778 + -2.3
4,532,779 - -2.4
4,532,792 + -1.3
4,532,953 + PFLU_RS20025 0.21 -1.6
4,532,953 + PFLU_RS20025 0.21 -1.1
4,533,473 + PFLU_RS20025 0.88 -0.8
4,533,473 + PFLU_RS20025 0.88 -0.9
4,533,474 - PFLU_RS20025 0.88 -0.4
4,533,716 + PFLU_RS20030 0.19 +2.7
4,533,716 + PFLU_RS20030 0.19 +1.1
4,533,716 + PFLU_RS20030 0.19 -2.4
4,533,717 - PFLU_RS20030 0.19 +0.1
4,533,717 - PFLU_RS20030 0.19 -2.1
4,533,717 - PFLU_RS20030 0.19 -0.2
4,533,734 + PFLU_RS20030 0.21 -1.4
4,533,734 + PFLU_RS20030 0.21 -0.9
4,533,734 + PFLU_RS20030 0.21 -1.0
4,533,735 - PFLU_RS20030 0.21 +1.1
4,533,735 - PFLU_RS20030 0.21 +0.2
4,533,735 - PFLU_RS20030 0.21 -0.9

Or see this region's nucleotide sequence