Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12655

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
2,856,649	+				-0.0
2,856,649	+				-2.4
2,856,649	+				+1.9
2,856,649	+				+3.1
2,856,649	+				-1.8
2,856,649	+				+4.1
2,856,649	+				+0.2
2,856,650	-				-1.5
2,856,650	-				-2.2
2,856,650	-				-0.2
2,856,650	-				+1.6
2,856,650	-				-0.5
2,856,650	-				+1.3
2,856,650	-				-1.5
2,856,737	-				+0.7
2,856,737	-				+2.0
2,856,737	-				-2.5
2,856,738	+				-0.8
2,856,738	+				+0.4
2,856,765	+				-1.2
2,856,765	+				-0.5
2,856,766	-				+0.8
2,856,766	-				+2.8
2,856,770	+				+2.9
2,856,791	+				-1.8
2,856,791	+				-1.2
2,856,791	+				-2.2
2,856,791	+				+0.6
2,856,791	+				-2.0
2,856,791	+				-0.2
2,856,791	+				-2.1
2,856,791	+				-0.5
2,856,791	+				+1.9
2,856,792	-				+1.6
2,856,792	-				+1.7
2,856,792	-				-0.2
2,856,792	-				-0.8
2,856,792	-				-0.5
2,856,792	-				+0.9
2,856,792	-				-0.5
2,856,792	-				-0.8
2,856,792	-				+2.2
2,856,806	-				+0.5
2,856,806	-				+0.2
2,856,806	-				+3.9
2,856,806	-				+0.2
2,856,806	-				-0.1
2,856,806	-				+0.2
2,856,806	-				-0.5
2,856,806	-				-1.4
2,856,806	-				+0.5
2,856,806	-				-0.2
2,856,806	-				+1.1
2,856,806	-				-0.9
2,856,806	-				+3.3
2,856,806	-				-1.4
2,856,806	-				-0.0
2,856,806	-				-0.3
2,856,806	-				+0.8
2,856,806	-				+0.9
2,856,806	-				-0.8
2,856,806	-				+1.4
2,856,806	-				+0.2
2,856,806	-				-0.5
2,856,806	-				+0.2
2,856,806	-				+0.0
2,856,806	-				-2.5
2,856,806	-				-1.3
2,856,806	-				+4.0
2,856,806	-				+0.5
2,856,811	-				+2.3
2,856,811	-				-1.2
2,856,877	+				+1.8
2,856,883	+				-1.7
2,856,883	+				-1.5
2,856,883	+				-2.3
2,856,883	+				-0.8
2,856,883	+				-1.7
2,856,883	+				+2.0
2,856,883	+				-0.8
2,856,883	+				-0.7
2,856,883	+				-1.5
2,856,883	+				-0.2
2,856,884	-				-1.0
2,856,884	-				+1.8
2,856,884	-				+0.1
2,856,884	-				-1.4
2,856,884	-				-0.5
2,856,884	-				+1.2
2,856,971	+				+0.8
2,856,971	+				+0.7
2,856,971	+				-0.2
2,856,971	+				-1.2
2,856,971	+				+0.2
2,856,971	+				-1.0
2,856,971	+				+0.2
2,856,971	+				+3.1
2,856,971	+				+0.2
2,856,971	+				+0.2
2,856,971	+				+0.4
2,856,971	+				-1.6
2,856,972	-				+0.9
2,856,972	-				+0.8
2,856,972	-				+4.2
2,856,972	-				-0.2
2,856,972	-				+0.2
2,856,972	-				-1.0
2,856,972	-				-1.1
2,856,972	-				-0.8
2,856,972	-				+0.8
2,856,972	-				-2.0
2,856,972	-				+0.6
2,856,972	-				+1.0
2,856,975	+				-1.3
2,856,975	+				-1.0
2,856,975	+				-1.5
2,856,975	+				-0.2
2,856,975	+				+2.5
2,856,975	+				-1.4
2,856,975	+				-2.1
2,856,976	-				-1.7
2,856,976	-				+2.4
2,856,976	-				+2.4
2,856,979	+				+1.6
2,856,979	+				+3.7
2,856,980	-				+2.5
2,856,980	-				-1.7
2,856,980	-				-0.1
2,856,980	-				-2.2
2,857,140	-		PFLU_RS12645	0.66	+2.3
2,857,279	+				+1.7
2,857,465	+		PFLU_RS12650	0.77	-2.7
2,857,465	+		PFLU_RS12650	0.77	-0.8
2,857,465	+		PFLU_RS12650	0.77	-0.8
2,857,465	+		PFLU_RS12650	0.77	+0.6
2,857,466	-		PFLU_RS12650	0.77	-0.2
2,857,466	-		PFLU_RS12650	0.77	+2.2
2,857,466	-		PFLU_RS12650	0.77	-1.4
2,857,466	-		PFLU_RS12650	0.77	-2.4
2,857,466	-		PFLU_RS12650	0.77	+1.4
2,857,520	+				+1.4
2,857,520	+				+1.4
2,857,520	+				-1.4
2,857,520	+				+0.8
2,857,520	+				-0.8
2,857,521	-				-0.4
2,857,521	-				-0.2
2,857,521	-				+1.8
2,857,521	-				+0.8
2,857,539	+				+3.1
2,857,539	+				-1.0
2,857,539	+				-0.8
2,857,540	-				-2.1
2,857,594	+				-1.4
2,857,595	-				+2.6
2,857,625	+				-0.8
2,857,625	+				+0.1
2,857,625	+				-1.7
2,857,625	+				-1.2
2,857,625	+				+1.8
2,857,626	-				+0.4
2,857,626	-				-1.4
2,857,626	-				-0.5
2,857,626	-				-1.2
2,857,626	-				-1.2
2,857,626	-				-0.5
2,857,626	-				-1.2
2,857,782	+		PFLU_RS12655	0.55	-1.2
2,857,783	-		PFLU_RS12655	0.56	-0.4
2,857,834	+		PFLU_RS12655	0.74	+1.0
2,857,835	-		PFLU_RS12655	0.75	+0.8
2,857,837	+		PFLU_RS12655	0.75	-0.5
2,857,837	+		PFLU_RS12655	0.75	+3.9
2,857,837	+		PFLU_RS12655	0.75	-1.8
2,857,837	+		PFLU_RS12655	0.75	+0.8
2,857,837	+		PFLU_RS12655	0.75	-1.5
2,857,838	-		PFLU_RS12655	0.76	-1.4
2,857,838	-		PFLU_RS12655	0.76	+0.8
2,857,838	-		PFLU_RS12655	0.76	-1.8
2,857,838	-		PFLU_RS12655	0.76	-1.2
2,857,838	-		PFLU_RS12655	0.76	-1.0
2,857,838	-		PFLU_RS12655	0.76	-1.8
2,857,838	-		PFLU_RS12655	0.76	+0.2
2,857,880	+				+0.1
2,857,880	+				+1.5
2,857,880	+				+0.9
2,857,880	+				+3.4
2,857,880	+				+1.7
2,857,880	+				-2.5
2,857,880	+				+1.8
2,857,880	+				-0.5
2,857,880	+				+1.4
2,857,880	+				+1.3
2,857,880	+				+1.5
2,857,880	+				+2.9
2,857,881	-				-0.2
2,857,881	-				-1.5
2,857,881	-				-1.0
2,857,881	-				+1.5
2,857,881	-				-2.4
2,857,881	-				-0.2
2,857,881	-				-2.1
2,857,889	-				-0.2
2,857,923	+				+1.4
2,857,937	+				+0.2
2,857,938	-				-1.2
2,857,938	-				+3.4
2,857,938	-				+0.6
2,857,938	-				-1.9
2,857,978	+				-0.8
2,857,978	+				-1.3
2,857,978	+				+3.3
2,857,979	-				-1.7
2,857,979	-				-1.8
2,857,979	-				+0.2
2,857,979	-				+0.8
2,857,981	+				-2.0
2,857,981	+				+4.3
2,857,981	+				+0.6
2,857,981	+				-1.7
2,857,981	+				+3.4
2,857,981	+				-1.7
2,857,982	-				-1.2
2,857,982	-				+3.9
2,857,982	-				-1.9
2,857,982	-				-0.5
2,857,982	-				+1.8
2,858,024	+				-1.4
2,858,024	+				+1.2
2,858,024	+				-1.9
2,858,024	+				+1.3
2,858,024	+				-1.7
2,858,025	-				+1.8
2,858,025	-				-1.7
2,858,025	-				+0.8
2,858,025	-				+1.8
2,858,025	-				+5.4
2,858,066	+				+1.3
2,858,066	+				-1.2
2,858,090	+				+0.4
2,858,091	-				+3.1
2,858,149	+				+0.2
2,858,149	+				+0.4
2,858,150	-				-1.7
2,858,150	-				-1.0
2,858,156	+				+0.5
2,858,156	+				+0.8
2,858,156	+				-1.0
2,858,156	+				+0.4
2,858,156	+				+2.0
2,858,156	+				-0.4
2,858,157	-				-1.2
2,858,157	-				-0.8
2,858,157	-				-1.0
2,858,157	-				+2.4
2,858,157	-				-0.5
2,858,157	-				+0.2
2,858,192	+				+1.9
2,858,192	+				-1.5
2,858,192	+				+1.5
2,858,193	-				-1.0
2,858,193	-				-0.5
2,858,312	+				+0.2
2,858,312	+				+0.8
2,858,313	-				-0.2
2,858,313	-				-0.5
2,858,313	-				-0.2
2,858,313	-				+0.2
2,858,391	+		PFLU_RS12660	0.19	-0.2
2,858,391	+		PFLU_RS12660	0.19	-0.2
2,858,391	+		PFLU_RS12660	0.19	-1.4
2,858,392	-		PFLU_RS12660	0.19	+1.8
2,858,392	-		PFLU_RS12660	0.19	-1.4
2,858,392	-		PFLU_RS12660	0.19	+1.3
2,858,421	+		PFLU_RS12660	0.25	-0.2
2,858,421	+		PFLU_RS12660	0.25	-1.0
2,858,421	+		PFLU_RS12660	0.25	-0.5
2,858,421	+		PFLU_RS12660	0.25	+0.8
2,858,421	+		PFLU_RS12660	0.25	+0.8
2,858,421	+		PFLU_RS12660	0.25	-0.2
2,858,421	+		PFLU_RS12660	0.25	+0.6
2,858,421	+		PFLU_RS12660	0.25	+3.1
2,858,421	+		PFLU_RS12660	0.25	+0.8
2,858,421	+		PFLU_RS12660	0.25	+1.2
2,858,421	+		PFLU_RS12660	0.25	-2.2
2,858,421	+		PFLU_RS12660	0.25	-1.4
2,858,421	+		PFLU_RS12660	0.25	+1.2
2,858,422	-		PFLU_RS12660	0.26	-1.5
2,858,422	-		PFLU_RS12660	0.26	+0.8
2,858,422	-		PFLU_RS12660	0.26	-0.5
2,858,422	-		PFLU_RS12660	0.26	-0.2
2,858,422	-		PFLU_RS12660	0.26	-0.5
2,858,422	-		PFLU_RS12660	0.26	-0.8
2,858,422	-		PFLU_RS12660	0.26	-0.2
2,858,422	-		PFLU_RS12660	0.26	-0.2
2,858,422	-		PFLU_RS12660	0.26	-0.2
2,858,422	-		PFLU_RS12660	0.26	+0.8
2,858,422	-		PFLU_RS12660	0.26	+3.2
2,858,575	-		PFLU_RS12660	0.58	+0.8
2,858,589	+		PFLU_RS12660	0.61	-1.7
2,858,590	-		PFLU_RS12660	0.61	-1.2
2,858,656	+		PFLU_RS12660	0.75	+0.2
2,858,656	+		PFLU_RS12660	0.75	+2.5
2,858,657	-		PFLU_RS12660	0.76	-1.4
2,858,657	-		PFLU_RS12660	0.76	-1.4
2,858,769	+				-0.2
2,858,770	-				+0.6
2,858,770	-				-1.2
2,858,797	-				+1.8
2,858,812	+				+1.8
2,858,813	-				+1.8
2,858,813	-				-1.7
2,858,813	-				+4.8
2,858,813	-				+1.0
2,858,815	+				+2.5
2,858,815	+				+0.2
2,858,815	+				-0.5
2,858,815	+				-0.5
2,858,815	+				-1.1
2,858,815	+				+3.4
2,858,816	-				-0.1
2,858,816	-				-0.8
2,858,816	-				-0.2
2,858,816	-				+1.2
2,858,831	+				+0.2
2,858,832	-				-1.5
2,858,832	-				+0.8
2,858,832	-				-2.1
2,858,854	+				-2.5
2,858,855	-				+1.8