Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11100

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
2,447,263	+				+0.5
2,447,263	+				-0.9
2,447,263	+				+0.0
2,447,263	+				+3.0
2,447,263	+				-0.0
2,447,264	-				+1.6
2,447,264	-				+1.1
2,447,264	-				-0.4
2,447,264	-				-0.9
2,447,264	-				-0.9
2,447,280	+				-0.0
2,447,280	+				+2.5
2,447,280	+				-0.0
2,447,280	+				+0.8
2,447,281	-				-0.0
2,447,285	+				+2.0
2,447,285	+				-0.0
2,447,285	+				+1.6
2,447,285	+				-0.4
2,447,285	+				-1.5
2,447,285	+				-1.2
2,447,286	-				+0.4
2,447,286	-				+0.2
2,447,286	-				-0.0
2,447,286	-				+1.0
2,447,312	-				-1.9
2,447,312	-				+0.2
2,447,312	-				+0.3
2,447,312	-				-1.4
2,447,405	-		PFLU_RS11095	0.14	+1.6
2,447,405	-		PFLU_RS11095	0.14	-0.9
2,447,508	+		PFLU_RS11095	0.25	-1.2
2,447,509	-		PFLU_RS11095	0.25	-1.3
2,447,509	-		PFLU_RS11095	0.25	-2.3
2,447,536	+		PFLU_RS11095	0.28	-0.0
2,447,536	+		PFLU_RS11095	0.28	+0.6
2,447,537	-		PFLU_RS11095	0.28	-0.8
2,447,550	-		PFLU_RS11095	0.29	+2.7
2,447,550	-		PFLU_RS11095	0.29	+3.3
2,447,593	-		PFLU_RS11095	0.33	+2.0
2,447,593	-		PFLU_RS11095	0.33	-0.0
2,447,756	+		PFLU_RS11095	0.50	+0.9
2,447,756	+		PFLU_RS11095	0.50	-0.0
2,447,756	+		PFLU_RS11095	0.50	+1.1
2,447,757	-		PFLU_RS11095	0.50	+0.8
2,447,757	-		PFLU_RS11095	0.50	+0.3
2,447,757	-		PFLU_RS11095	0.50	-1.2
2,447,757	-		PFLU_RS11095	0.50	-0.2
2,447,779	+		PFLU_RS11095	0.52	+1.0
2,447,809	+		PFLU_RS11095	0.55	-1.5
2,447,837	+		PFLU_RS11095	0.58	+0.4
2,447,837	+		PFLU_RS11095	0.58	-2.3
2,447,838	-		PFLU_RS11095	0.58	-0.4
2,447,838	-		PFLU_RS11095	0.58	+2.4
2,447,838	-		PFLU_RS11095	0.58	-0.8
2,447,853	+		PFLU_RS11095	0.60	-0.4
2,447,853	+		PFLU_RS11095	0.60	+0.9
2,447,854	-		PFLU_RS11095	0.60	+2.1
2,447,854	-		PFLU_RS11095	0.60	-0.4
2,447,854	-		PFLU_RS11095	0.60	-1.9
2,447,861	-		PFLU_RS11095	0.61	+3.5
2,447,904	+		PFLU_RS11095	0.65	-1.0
2,447,912	-		PFLU_RS11095	0.66	+3.0
2,448,008	+		PFLU_RS11095	0.76	+1.8
2,448,008	+		PFLU_RS11095	0.76	-1.2
2,448,009	-		PFLU_RS11095	0.76	+0.8
2,448,009	-		PFLU_RS11095	0.76	-1.7
2,448,064	+		PFLU_RS11095	0.81	-0.9
2,448,065	-		PFLU_RS11095	0.81	+1.5
2,448,065	-		PFLU_RS11095	0.81	-0.9
2,448,065	-		PFLU_RS11095	0.81	-0.6
2,448,077	+		PFLU_RS11095	0.83	-1.1
2,448,078	-		PFLU_RS11095	0.83	-1.6
2,448,078	-		PFLU_RS11095	0.83	-0.6
2,448,080	+		PFLU_RS11095	0.83	-1.6
2,448,080	+		PFLU_RS11095	0.83	-0.0
2,448,080	+		PFLU_RS11095	0.83	-1.4
2,448,081	-		PFLU_RS11095	0.83	-0.2
2,448,090	+		PFLU_RS11095	0.84	+1.1
2,448,091	-		PFLU_RS11095	0.84	+1.1
2,448,091	-		PFLU_RS11095	0.84	+0.3
2,448,091	-		PFLU_RS11095	0.84	+2.3
2,448,114	+		PFLU_RS11095	0.86	-2.0
2,448,115	-		PFLU_RS11095	0.86	+0.4
2,448,194	+				-2.0
2,448,194	+				-0.4
2,448,195	-				-0.4
2,448,196	+				-2.4
2,448,196	+				-0.2
2,448,196	+				+1.4
2,448,196	+				-0.9
2,448,196	+				+1.2
2,448,196	+				-1.0
2,448,196	+				+1.2
2,448,203	+				-0.4
2,448,203	+				+1.5
2,448,203	+				+0.1
2,448,242	-				-1.4
2,448,242	-				-2.7
2,448,245	+				+0.2
2,448,246	-				-0.5
2,448,246	-				+1.0
2,448,253	-				+0.4
2,448,270	+				-1.9
2,448,270	+				+0.5
2,448,270	+				+0.1
2,448,271	-				+2.2
2,448,271	-				-0.6
2,448,312	+		PFLU_RS11100	0.15	-2.1
2,448,313	-		PFLU_RS11100	0.16	+2.1
2,448,313	-		PFLU_RS11100	0.16	-0.4
2,448,313	-		PFLU_RS11100	0.16	+3.7
2,448,313	-		PFLU_RS11100	0.16	-2.1
2,448,396	+		PFLU_RS11100	0.36	+1.2
2,448,396	+		PFLU_RS11100	0.36	+0.1
2,448,397	-		PFLU_RS11100	0.37	-1.4
2,448,397	-		PFLU_RS11100	0.37	+0.8
2,448,397	-		PFLU_RS11100	0.37	-0.9
2,448,397	-		PFLU_RS11100	0.37	+5.0
2,448,425	+		PFLU_RS11100	0.44	-0.6
2,448,468	-		PFLU_RS11100	0.55	-1.7
2,448,468	-		PFLU_RS11100	0.55	-1.9
2,448,478	+		PFLU_RS11100	0.57	+2.5
2,448,478	+		PFLU_RS11100	0.57	+1.2
2,448,479	-		PFLU_RS11100	0.57	-0.0
2,448,558	+		PFLU_RS11100	0.77	-1.4
2,448,559	-		PFLU_RS11100	0.77	+1.0
2,448,785	+				+0.1
2,448,791	+				-1.2
2,448,791	+				-0.2
2,448,792	-				+2.1
2,448,792	-				+0.4
2,448,796	+				+1.3
2,448,796	+				-0.6
2,448,797	-				-1.7
2,448,797	-				-0.2
2,448,797	-				+0.4
2,448,826	+				+1.1
2,448,840	+				-1.9
2,448,840	+				-0.5
2,448,840	+				+2.4
2,448,840	+				-0.4
2,448,840	+				-0.0
2,448,840	+				+1.0
2,448,841	-				+2.5
2,448,841	-				+0.4
2,448,841	-				+1.3
2,448,841	-				+0.3
2,448,841	-				+2.0
2,448,841	-				+0.4
2,448,841	-				+3.3
2,448,841	-				+2.8
2,448,851	+				+0.2
2,448,852	-				-0.5
2,448,895	-				-1.9
2,448,950	-		PFLU_RS31545	0.21	+0.8
2,448,994	+		PFLU_RS31545	0.57	-2.6
2,448,994	+		PFLU_RS31545	0.57	-0.4
2,448,995	-		PFLU_RS31545	0.58	+0.4
2,448,995	-		PFLU_RS31545	0.58	-1.4
2,449,029	-		PFLU_RS31545	0.87	-1.5
2,449,130	+				-1.9
2,449,130	+				-1.4
2,449,130	+				-0.9
2,449,130	+				-2.0
2,449,130	+				+0.3
2,449,130	+				-1.4
2,449,131	-				+3.5
2,449,131	-				-0.7
2,449,131	-				+2.1
2,449,131	-				+1.9
2,449,131	-				-0.9
2,449,206	+				-2.6
2,449,206	+				-1.4
2,449,206	+				-1.4
2,449,206	+				+0.8
2,449,207	-				-1.5
2,449,207	-				-0.6
2,449,240	-		PFLU_RS11105	0.11	-0.4
2,449,240	-		PFLU_RS11105	0.11	+3.7
2,449,240	-		PFLU_RS11105	0.11	+2.0
2,449,329	+		PFLU_RS11105	0.33	+5.7
2,449,329	+		PFLU_RS11105	0.33	-2.1
2,449,329	+		PFLU_RS11105	0.33	-2.7
2,449,329	+		PFLU_RS11105	0.33	+1.7
2,449,329	+		PFLU_RS11105	0.33	-0.4
2,449,329	+		PFLU_RS11105	0.33	-2.7
2,449,330	-		PFLU_RS11105	0.34	-0.2
2,449,330	-		PFLU_RS11105	0.34	+0.4
2,449,330	-		PFLU_RS11105	0.34	+0.9
2,449,330	-		PFLU_RS11105	0.34	+0.0
2,449,624	+				+0.7
2,449,624	+				-1.5
2,449,624	+				+0.4
2,449,625	-				-0.4