Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02890

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02880 and PFLU_RS02885 are separated by 30 nucleotidesPFLU_RS02885 and PFLU_RS02890 are separated by 50 nucleotidesPFLU_RS02890 and PFLU_RS02895 are separated by 8 nucleotides PFLU_RS02880: PFLU_RS02880 - urease accessory protein UreD, at 660,481 to 661,320 _RS02880 PFLU_RS02885: PFLU_RS02885 - urea ABC transporter ATP-binding subunit UrtE, at 661,351 to 662,049 _RS02885 PFLU_RS02890: PFLU_RS02890 - urea ABC transporter ATP-binding protein UrtD, at 662,100 to 662,921 _RS02890 PFLU_RS02895: PFLU_RS02895 - urea ABC transporter permease subunit UrtC, at 662,930 to 663,997 _RS02895 Position (kb) 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 661.105 kb on - strand, within PFLU_RS02880at 661.181 kb on + strand, within PFLU_RS02880at 661.182 kb on - strand, within PFLU_RS02880at 661.182 kb on - strand, within PFLU_RS02880at 661.352 kb on + strandat 661.352 kb on + strandat 661.352 kb on + strandat 661.352 kb on + strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.353 kb on - strandat 661.360 kb on + strandat 661.360 kb on + strandat 661.361 kb on - strandat 661.361 kb on - strandat 661.372 kb on + strandat 661.372 kb on + strandat 661.372 kb on + strandat 661.372 kb on + strandat 661.372 kb on + strandat 661.372 kb on + strandat 661.372 kb on + strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.373 kb on - strandat 661.389 kb on + strandat 661.389 kb on + strandat 661.390 kb on - strandat 661.390 kb on - strandat 661.439 kb on + strand, within PFLU_RS02885at 661.439 kb on + strand, within PFLU_RS02885at 661.439 kb on + strand, within PFLU_RS02885at 661.440 kb on - strand, within PFLU_RS02885at 661.469 kb on + strand, within PFLU_RS02885at 661.469 kb on + strand, within PFLU_RS02885at 661.700 kb on + strand, within PFLU_RS02885at 661.700 kb on + strand, within PFLU_RS02885at 661.701 kb on - strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.811 kb on + strand, within PFLU_RS02885at 661.812 kb on - strand, within PFLU_RS02885at 661.812 kb on - strand, within PFLU_RS02885at 661.812 kb on - strand, within PFLU_RS02885at 661.812 kb on - strand, within PFLU_RS02885at 661.812 kb on - strand, within PFLU_RS02885at 661.937 kb on - strand, within PFLU_RS02885at 662.018 kb on + strandat 662.018 kb on + strandat 662.018 kb on + strandat 662.021 kb on + strandat 662.021 kb on + strandat 662.021 kb on + strandat 662.022 kb on - strandat 662.022 kb on - strandat 662.022 kb on - strandat 662.049 kb on + strandat 662.049 kb on + strandat 662.049 kb on + strandat 662.049 kb on + strandat 662.050 kb on - strandat 662.050 kb on - strandat 662.093 kb on + strandat 662.093 kb on + strandat 662.093 kb on + strandat 662.093 kb on + strandat 662.093 kb on + strandat 662.093 kb on + strandat 662.094 kb on - strandat 662.094 kb on - strandat 662.094 kb on - strandat 662.113 kb on + strandat 662.113 kb on + strandat 662.113 kb on + strandat 662.762 kb on - strand, within PFLU_RS02890at 662.967 kb on + strandat 662.968 kb on - strandat 663.012 kb on + strandat 663.013 kb on - strandat 663.032 kb on - strandat 663.032 kb on - strandat 663.160 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.180 kb on + strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.181 kb on - strand, within PFLU_RS02895at 663.406 kb on + strand, within PFLU_RS02895at 663.406 kb on + strand, within PFLU_RS02895at 663.406 kb on + strand, within PFLU_RS02895at 663.525 kb on + strand, within PFLU_RS02895at 663.525 kb on + strand, within PFLU_RS02895at 663.525 kb on + strand, within PFLU_RS02895at 663.525 kb on + strand, within PFLU_RS02895at 663.525 kb on + strand, within PFLU_RS02895at 663.525 kb on + strand, within PFLU_RS02895at 663.526 kb on - strand, within PFLU_RS02895at 663.639 kb on + strand, within PFLU_RS02895at 663.639 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.714 kb on + strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.715 kb on - strand, within PFLU_RS02895at 663.781 kb on - strand, within PFLU_RS02895at 663.781 kb on - strand, within PFLU_RS02895at 663.819 kb on + strand, within PFLU_RS02895at 663.819 kb on + strand, within PFLU_RS02895at 663.819 kb on + strand, within PFLU_RS02895at 663.819 kb on + strand, within PFLU_RS02895at 663.852 kb on + strand, within PFLU_RS02895at 663.852 kb on + strand, within PFLU_RS02895at 663.852 kb on + strand, within PFLU_RS02895at 663.853 kb on - strand, within PFLU_RS02895at 663.853 kb on - strand, within PFLU_RS02895at 663.853 kb on - strand, within PFLU_RS02895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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661,105 - PFLU_RS02880 0.74 -0.8
661,181 + PFLU_RS02880 0.83 +1.9
661,182 - PFLU_RS02880 0.83 +1.3
661,182 - PFLU_RS02880 0.83 +0.2
661,352 + +1.9
661,352 + -1.4
661,352 + +2.6
661,352 + -1.7
661,353 - +0.3
661,353 - +4.5
661,353 - +0.8
661,353 - -2.1
661,353 - -0.7
661,353 - -2.6
661,353 - -1.7
661,353 - +0.3
661,353 - +2.9
661,360 + -1.7
661,360 + +0.5
661,361 - +2.9
661,361 - -1.5
661,372 + +1.9
661,372 + -1.6
661,372 + -0.8
661,372 + -1.5
661,372 + +1.3
661,372 + -0.8
661,372 + -1.1
661,373 - +0.6
661,373 - -1.4
661,373 - -1.7
661,373 - -1.2
661,373 - +0.3
661,373 - +0.4
661,373 - +0.4
661,373 - -1.5
661,373 - -1.8
661,373 - +1.6
661,389 + +0.8
661,389 + +0.0
661,390 - +1.5
661,390 - +0.4
661,439 + PFLU_RS02885 0.13 +0.2
661,439 + PFLU_RS02885 0.13 +0.4
661,439 + PFLU_RS02885 0.13 -0.6
661,440 - PFLU_RS02885 0.13 -2.1
661,469 + PFLU_RS02885 0.17 -1.0
661,469 + PFLU_RS02885 0.17 +0.3
661,700 + PFLU_RS02885 0.50 -2.6
661,700 + PFLU_RS02885 0.50 +1.4
661,701 - PFLU_RS02885 0.50 -1.7
661,811 + PFLU_RS02885 0.66 +0.3
661,811 + PFLU_RS02885 0.66 -1.5
661,811 + PFLU_RS02885 0.66 +0.6
661,811 + PFLU_RS02885 0.66 +0.8
661,811 + PFLU_RS02885 0.66 -0.5
661,811 + PFLU_RS02885 0.66 +1.1
661,811 + PFLU_RS02885 0.66 -3.1
661,811 + PFLU_RS02885 0.66 +1.3
661,811 + PFLU_RS02885 0.66 -0.0
661,812 - PFLU_RS02885 0.66 +0.4
661,812 - PFLU_RS02885 0.66 -2.2
661,812 - PFLU_RS02885 0.66 +0.3
661,812 - PFLU_RS02885 0.66 -0.7
661,812 - PFLU_RS02885 0.66 +1.7
661,937 - PFLU_RS02885 0.84 +0.5
662,018 + -1.1
662,018 + +1.6
662,018 + -2.7
662,021 + -1.9
662,021 + -1.5
662,021 + +1.3
662,022 - +1.8
662,022 - -0.6
662,022 - -0.9
662,049 + +3.1
662,049 + +1.3
662,049 + +2.4
662,049 + +0.3
662,050 - -1.4
662,050 - -1.9
662,093 + +3.1
662,093 + +2.1
662,093 + -1.5
662,093 + -0.3
662,093 + -1.6
662,093 + +2.3
662,094 - +1.3
662,094 - -2.0
662,094 - -1.2
662,113 + +1.8
662,113 + -0.9
662,113 + +0.7
662,762 - PFLU_RS02890 0.81 -0.9
662,967 + -1.3
662,968 - -2.1
663,012 + -0.2
663,013 - +0.6
663,032 - -0.2
663,032 - +3.1
663,160 + PFLU_RS02895 0.22 +0.3
663,180 + PFLU_RS02895 0.23 -2.0
663,180 + PFLU_RS02895 0.23 +0.1
663,180 + PFLU_RS02895 0.23 -2.3
663,180 + PFLU_RS02895 0.23 +0.6
663,180 + PFLU_RS02895 0.23 +1.4
663,180 + PFLU_RS02895 0.23 -0.7
663,180 + PFLU_RS02895 0.23 +0.8
663,180 + PFLU_RS02895 0.23 -0.4
663,180 + PFLU_RS02895 0.23 -0.6
663,180 + PFLU_RS02895 0.23 +0.3
663,180 + PFLU_RS02895 0.23 +2.7
663,180 + PFLU_RS02895 0.23 -1.2
663,180 + PFLU_RS02895 0.23 +0.1
663,180 + PFLU_RS02895 0.23 -2.6
663,180 + PFLU_RS02895 0.23 +1.9
663,181 - PFLU_RS02895 0.24 -1.6
663,181 - PFLU_RS02895 0.24 +1.7
663,181 - PFLU_RS02895 0.24 -2.3
663,181 - PFLU_RS02895 0.24 -1.9
663,181 - PFLU_RS02895 0.24 +0.7
663,181 - PFLU_RS02895 0.24 -1.3
663,181 - PFLU_RS02895 0.24 -0.1
663,181 - PFLU_RS02895 0.24 -0.3
663,181 - PFLU_RS02895 0.24 -0.2
663,181 - PFLU_RS02895 0.24 +1.4
663,181 - PFLU_RS02895 0.24 +0.6
663,181 - PFLU_RS02895 0.24 +1.9
663,181 - PFLU_RS02895 0.24 +1.0
663,406 + PFLU_RS02895 0.45 +2.3
663,406 + PFLU_RS02895 0.45 -1.0
663,406 + PFLU_RS02895 0.45 +1.1
663,525 + PFLU_RS02895 0.56 +1.0
663,525 + PFLU_RS02895 0.56 +0.3
663,525 + PFLU_RS02895 0.56 -1.9
663,525 + PFLU_RS02895 0.56 +1.3
663,525 + PFLU_RS02895 0.56 -0.9
663,525 + PFLU_RS02895 0.56 +1.3
663,526 - PFLU_RS02895 0.56 -1.4
663,639 + PFLU_RS02895 0.66 +1.4
663,639 + PFLU_RS02895 0.66 +0.3
663,714 + PFLU_RS02895 0.73 +2.2
663,714 + PFLU_RS02895 0.73 +1.8
663,714 + PFLU_RS02895 0.73 -1.8
663,714 + PFLU_RS02895 0.73 +1.5
663,714 + PFLU_RS02895 0.73 -0.2
663,714 + PFLU_RS02895 0.73 +2.9
663,714 + PFLU_RS02895 0.73 -2.2
663,714 + PFLU_RS02895 0.73 +3.6
663,714 + PFLU_RS02895 0.73 -1.9
663,714 + PFLU_RS02895 0.73 +1.0
663,714 + PFLU_RS02895 0.73 -1.6
663,714 + PFLU_RS02895 0.73 +2.6
663,714 + PFLU_RS02895 0.73 -1.0
663,714 + PFLU_RS02895 0.73 +1.1
663,715 - PFLU_RS02895 0.74 -1.6
663,715 - PFLU_RS02895 0.74 -1.0
663,715 - PFLU_RS02895 0.74 +2.6
663,715 - PFLU_RS02895 0.74 +0.7
663,715 - PFLU_RS02895 0.74 +0.5
663,715 - PFLU_RS02895 0.74 +1.6
663,715 - PFLU_RS02895 0.74 -2.1
663,715 - PFLU_RS02895 0.74 +1.9
663,781 - PFLU_RS02895 0.80 -0.0
663,781 - PFLU_RS02895 0.80 +2.8
663,819 + PFLU_RS02895 0.83 -2.5
663,819 + PFLU_RS02895 0.83 -1.1
663,819 + PFLU_RS02895 0.83 +1.4
663,819 + PFLU_RS02895 0.83 +0.9
663,852 + PFLU_RS02895 0.86 +2.3
663,852 + PFLU_RS02895 0.86 +0.9
663,852 + PFLU_RS02895 0.86 +1.0
663,853 - PFLU_RS02895 0.86 -0.3
663,853 - PFLU_RS02895 0.86 +1.3
663,853 - PFLU_RS02895 0.86 -0.2

Or see this region's nucleotide sequence