Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02865 and PFLU_RS02870 are separated by 5 nucleotides PFLU_RS02870 and PFLU_RS02875 are separated by 9 nucleotides PFLU_RS02875 and PFLU_RS02880 are separated by 145 nucleotides PFLU_RS02880 and PFLU_RS02885 are separated by 30 nucleotides PFLU_RS02885 and PFLU_RS02890 are separated by 50 nucleotides
PFLU_RS02865: PFLU_RS02865 - GNAT family N-acetyltransferase, at 658,972 to 659,505
_RS02865
PFLU_RS02870: PFLU_RS02870 - N-acetyltransferase, at 659,511 to 660,023
_RS02870
PFLU_RS02875: PFLU_RS02875 - urease subunit gamma, at 660,033 to 660,335
_RS02875
PFLU_RS02880: PFLU_RS02880 - urease accessory protein UreD, at 660,481 to 661,320
_RS02880
PFLU_RS02885: PFLU_RS02885 - urea ABC transporter ATP-binding subunit UrtE, at 661,351 to 662,049
_RS02885
PFLU_RS02890: PFLU_RS02890 - urea ABC transporter ATP-binding protein UrtD, at 662,100 to 662,921
_RS02890
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 659.556 kb on - strand at 659.556 kb on - strand at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.792 kb on - strand, within PFLU_RS02870 at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.242 kb on - strand, within PFLU_RS02875 at 660.283 kb on - strand, within PFLU_RS02875 at 660.283 kb on - strand, within PFLU_RS02875 at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.356 kb on - strand at 660.356 kb on - strand at 660.363 kb on + strand at 660.364 kb on - strand at 660.364 kb on - strand at 660.367 kb on + strand at 660.367 kb on + strand at 660.367 kb on + strand at 660.368 kb on - strand at 660.368 kb on - strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.888 kb on - strand, within PFLU_RS02880 at 661.040 kb on + strand, within PFLU_RS02880 at 661.105 kb on - strand, within PFLU_RS02880 at 661.181 kb on + strand, within PFLU_RS02880 at 661.182 kb on - strand, within PFLU_RS02880 at 661.182 kb on - strand, within PFLU_RS02880 at 661.352 kb on + strand at 661.352 kb on + strand at 661.352 kb on + strand at 661.352 kb on + strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.353 kb on - strand at 661.360 kb on + strand at 661.360 kb on + strand at 661.361 kb on - strand at 661.361 kb on - strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.372 kb on + strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.373 kb on - strand at 661.389 kb on + strand at 661.389 kb on + strand at 661.390 kb on - strand at 661.390 kb on - strand at 661.439 kb on + strand, within PFLU_RS02885 at 661.439 kb on + strand, within PFLU_RS02885 at 661.439 kb on + strand, within PFLU_RS02885 at 661.440 kb on - strand, within PFLU_RS02885 at 661.469 kb on + strand, within PFLU_RS02885 at 661.469 kb on + strand, within PFLU_RS02885 at 661.700 kb on + strand, within PFLU_RS02885 at 661.700 kb on + strand, within PFLU_RS02885 at 661.701 kb on - strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.811 kb on + strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.812 kb on - strand, within PFLU_RS02885 at 661.937 kb on - strand, within PFLU_RS02885 at 662.018 kb on + strand at 662.018 kb on + strand at 662.018 kb on + strand at 662.021 kb on + strand at 662.021 kb on + strand at 662.021 kb on + strand at 662.022 kb on - strand at 662.022 kb on - strand at 662.022 kb on - strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.049 kb on + strand at 662.050 kb on - strand at 662.050 kb on - strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.093 kb on + strand at 662.094 kb on - strand at 662.094 kb on - strand at 662.094 kb on - strand at 662.113 kb on + strand at 662.113 kb on + strand at 662.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 659,556 - +2.4 659,556 - +2.4 659,770 + PFLU_RS02870 0.50 +0.2 659,770 + PFLU_RS02870 0.50 +0.3 659,770 + PFLU_RS02870 0.50 +0.2 659,770 + PFLU_RS02870 0.50 -0.8 659,770 + PFLU_RS02870 0.50 +1.0 659,770 + PFLU_RS02870 0.50 +2.6 659,770 + PFLU_RS02870 0.50 +2.1 659,770 + PFLU_RS02870 0.50 +2.6 659,771 - PFLU_RS02870 0.51 -1.9 659,771 - PFLU_RS02870 0.51 -0.6 659,771 - PFLU_RS02870 0.51 +4.0 659,771 - PFLU_RS02870 0.51 +2.2 659,792 - PFLU_RS02870 0.55 -1.6 659,974 + -1.4 659,974 + -1.5 659,974 + +0.0 659,974 + +1.6 659,974 + +0.6 659,974 + -0.8 659,974 + +2.7 659,974 + -0.8 659,974 + +0.8 659,975 - +0.4 659,975 - -0.5 659,975 - +0.6 659,975 - +0.7 659,975 - -2.0 659,975 - +1.5 659,975 - +4.8 659,975 - +1.2 659,975 - +1.5 660,223 + PFLU_RS02875 0.63 +0.7 660,223 + PFLU_RS02875 0.63 +3.2 660,223 + PFLU_RS02875 0.63 +2.4 660,223 + PFLU_RS02875 0.63 +0.4 660,223 + PFLU_RS02875 0.63 -2.5 660,223 + PFLU_RS02875 0.63 +2.4 660,223 + PFLU_RS02875 0.63 +0.8 660,224 - PFLU_RS02875 0.63 +2.2 660,224 - PFLU_RS02875 0.63 -0.4 660,224 - PFLU_RS02875 0.63 -0.3 660,224 - PFLU_RS02875 0.63 +2.6 660,224 - PFLU_RS02875 0.63 +0.3 660,242 - PFLU_RS02875 0.69 +1.8 660,283 - PFLU_RS02875 0.83 +3.1 660,283 - PFLU_RS02875 0.83 +1.0 660,355 + -1.2 660,355 + +0.4 660,355 + +1.4 660,355 + -0.7 660,355 + +0.0 660,356 - +1.8 660,356 - +1.4 660,363 + +2.0 660,364 - -2.1 660,364 - +1.4 660,367 + -2.4 660,367 + +0.5 660,367 + -0.1 660,368 - -0.7 660,368 - +2.5 660,424 + -1.2 660,424 + -0.4 660,424 + -0.5 660,424 + +0.4 660,424 + -0.4 660,424 + +0.0 660,424 + -1.3 660,424 + +0.6 660,424 + +1.8 660,425 - -1.2 660,425 - +0.7 660,425 - +1.6 660,425 - +0.0 660,425 - -0.0 660,425 - -1.9 660,425 - -1.0 660,425 - +1.3 660,425 - -2.1 660,425 - -1.3 660,425 - +0.6 660,425 - +1.1 660,425 - +1.4 660,425 - +1.3 660,425 - +0.3 660,425 - +0.5 660,472 + +1.0 660,472 + +3.7 660,472 + -1.6 660,472 + +2.7 660,472 + +0.5 660,472 + +0.3 660,472 + +0.2 660,472 + +2.3 660,472 + +1.6 660,682 + PFLU_RS02880 0.24 -0.6 660,682 + PFLU_RS02880 0.24 -2.2 660,682 + PFLU_RS02880 0.24 +3.0 660,682 + PFLU_RS02880 0.24 -2.8 660,682 + PFLU_RS02880 0.24 +0.3 660,682 + PFLU_RS02880 0.24 -1.1 660,682 + PFLU_RS02880 0.24 -2.6 660,683 - PFLU_RS02880 0.24 +2.1 660,683 - PFLU_RS02880 0.24 -0.8 660,683 - PFLU_RS02880 0.24 +0.6 660,683 - PFLU_RS02880 0.24 +0.3 660,683 - PFLU_RS02880 0.24 +1.0 660,683 - PFLU_RS02880 0.24 -0.1 660,683 - PFLU_RS02880 0.24 -1.8 660,683 - PFLU_RS02880 0.24 -0.0 660,683 - PFLU_RS02880 0.24 +1.3 660,683 - PFLU_RS02880 0.24 -0.4 660,888 - PFLU_RS02880 0.48 -1.3 661,040 + PFLU_RS02880 0.67 +2.1 661,105 - PFLU_RS02880 0.74 -0.8 661,181 + PFLU_RS02880 0.83 +1.9 661,182 - PFLU_RS02880 0.83 +1.3 661,182 - PFLU_RS02880 0.83 +0.2 661,352 + +1.9 661,352 + -1.4 661,352 + +2.6 661,352 + -1.7 661,353 - +0.3 661,353 - +4.5 661,353 - +0.8 661,353 - -2.1 661,353 - -0.7 661,353 - -2.6 661,353 - -1.7 661,353 - +0.3 661,353 - +2.9 661,360 + -1.7 661,360 + +0.5 661,361 - +2.9 661,361 - -1.5 661,372 + +1.9 661,372 + -1.6 661,372 + -0.8 661,372 + -1.5 661,372 + +1.3 661,372 + -0.8 661,372 + -1.1 661,373 - +0.6 661,373 - -1.4 661,373 - -1.7 661,373 - -1.2 661,373 - +0.3 661,373 - +0.4 661,373 - +0.4 661,373 - -1.5 661,373 - -1.8 661,373 - +1.6 661,389 + +0.8 661,389 + +0.0 661,390 - +1.5 661,390 - +0.4 661,439 + PFLU_RS02885 0.13 +0.2 661,439 + PFLU_RS02885 0.13 +0.4 661,439 + PFLU_RS02885 0.13 -0.6 661,440 - PFLU_RS02885 0.13 -2.1 661,469 + PFLU_RS02885 0.17 -1.0 661,469 + PFLU_RS02885 0.17 +0.3 661,700 + PFLU_RS02885 0.50 -2.6 661,700 + PFLU_RS02885 0.50 +1.4 661,701 - PFLU_RS02885 0.50 -1.7 661,811 + PFLU_RS02885 0.66 +0.3 661,811 + PFLU_RS02885 0.66 -1.5 661,811 + PFLU_RS02885 0.66 +0.6 661,811 + PFLU_RS02885 0.66 +0.8 661,811 + PFLU_RS02885 0.66 -0.5 661,811 + PFLU_RS02885 0.66 +1.1 661,811 + PFLU_RS02885 0.66 -3.1 661,811 + PFLU_RS02885 0.66 +1.3 661,811 + PFLU_RS02885 0.66 -0.0 661,812 - PFLU_RS02885 0.66 +0.4 661,812 - PFLU_RS02885 0.66 -2.2 661,812 - PFLU_RS02885 0.66 +0.3 661,812 - PFLU_RS02885 0.66 -0.7 661,812 - PFLU_RS02885 0.66 +1.7 661,937 - PFLU_RS02885 0.84 +0.5 662,018 + -1.1 662,018 + +1.6 662,018 + -2.7 662,021 + -1.9 662,021 + -1.5 662,021 + +1.3 662,022 - +1.8 662,022 - -0.6 662,022 - -0.9 662,049 + +3.1 662,049 + +1.3 662,049 + +2.4 662,049 + +0.3 662,050 - -1.4 662,050 - -1.9 662,093 + +3.1 662,093 + +2.1 662,093 + -1.5 662,093 + -0.3 662,093 + -1.6 662,093 + +2.3 662,094 - +1.3 662,094 - -2.0 662,094 - -1.2 662,113 + +1.8 662,113 + -0.9 662,113 + +0.7
Or see this region's nucleotide sequence