Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02865 and PFLU_RS02870 are separated by 5 nucleotides PFLU_RS02870 and PFLU_RS02875 are separated by 9 nucleotides PFLU_RS02875 and PFLU_RS02880 are separated by 145 nucleotides
PFLU_RS02865: PFLU_RS02865 - GNAT family N-acetyltransferase, at 658,972 to 659,505
_RS02865
PFLU_RS02870: PFLU_RS02870 - N-acetyltransferase, at 659,511 to 660,023
_RS02870
PFLU_RS02875: PFLU_RS02875 - urease subunit gamma, at 660,033 to 660,335
_RS02875
PFLU_RS02880: PFLU_RS02880 - urease accessory protein UreD, at 660,481 to 661,320
_RS02880
Position (kb) 660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 659.042 kb on + strand, within PFLU_RS02865 at 659.069 kb on + strand, within PFLU_RS02865 at 659.070 kb on - strand, within PFLU_RS02865 at 659.070 kb on - strand, within PFLU_RS02865 at 659.084 kb on + strand, within PFLU_RS02865 at 659.084 kb on + strand, within PFLU_RS02865 at 659.085 kb on - strand, within PFLU_RS02865 at 659.123 kb on + strand, within PFLU_RS02865 at 659.123 kb on + strand, within PFLU_RS02865 at 659.347 kb on + strand, within PFLU_RS02865 at 659.347 kb on + strand, within PFLU_RS02865 at 659.361 kb on - strand, within PFLU_RS02865 at 659.361 kb on - strand, within PFLU_RS02865 at 659.556 kb on - strand at 659.556 kb on - strand at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.770 kb on + strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.771 kb on - strand, within PFLU_RS02870 at 659.792 kb on - strand, within PFLU_RS02870 at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.974 kb on + strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 659.975 kb on - strand at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.223 kb on + strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.224 kb on - strand, within PFLU_RS02875 at 660.242 kb on - strand, within PFLU_RS02875 at 660.283 kb on - strand, within PFLU_RS02875 at 660.283 kb on - strand, within PFLU_RS02875 at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.355 kb on + strand at 660.356 kb on - strand at 660.356 kb on - strand at 660.363 kb on + strand at 660.364 kb on - strand at 660.364 kb on - strand at 660.367 kb on + strand at 660.367 kb on + strand at 660.367 kb on + strand at 660.368 kb on - strand at 660.368 kb on - strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.424 kb on + strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.425 kb on - strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.472 kb on + strand at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.682 kb on + strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.683 kb on - strand, within PFLU_RS02880 at 660.888 kb on - strand, within PFLU_RS02880 at 661.040 kb on + strand, within PFLU_RS02880 at 661.105 kb on - strand, within PFLU_RS02880 at 661.181 kb on + strand, within PFLU_RS02880 at 661.182 kb on - strand, within PFLU_RS02880 at 661.182 kb on - strand, within PFLU_RS02880
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 659,042 + PFLU_RS02865 0.13 -1.0 659,069 + PFLU_RS02865 0.18 +2.7 659,070 - PFLU_RS02865 0.18 +1.4 659,070 - PFLU_RS02865 0.18 -0.7 659,084 + PFLU_RS02865 0.21 +1.2 659,084 + PFLU_RS02865 0.21 -0.7 659,085 - PFLU_RS02865 0.21 +1.9 659,123 + PFLU_RS02865 0.28 +1.5 659,123 + PFLU_RS02865 0.28 +0.7 659,347 + PFLU_RS02865 0.70 +0.8 659,347 + PFLU_RS02865 0.70 +1.2 659,361 - PFLU_RS02865 0.73 +0.0 659,361 - PFLU_RS02865 0.73 -1.0 659,556 - +2.4 659,556 - +2.4 659,770 + PFLU_RS02870 0.50 +0.2 659,770 + PFLU_RS02870 0.50 +0.3 659,770 + PFLU_RS02870 0.50 +0.2 659,770 + PFLU_RS02870 0.50 -0.8 659,770 + PFLU_RS02870 0.50 +1.0 659,770 + PFLU_RS02870 0.50 +2.6 659,770 + PFLU_RS02870 0.50 +2.1 659,770 + PFLU_RS02870 0.50 +2.6 659,771 - PFLU_RS02870 0.51 -1.9 659,771 - PFLU_RS02870 0.51 -0.6 659,771 - PFLU_RS02870 0.51 +4.0 659,771 - PFLU_RS02870 0.51 +2.2 659,792 - PFLU_RS02870 0.55 -1.6 659,974 + -1.4 659,974 + -1.5 659,974 + +0.0 659,974 + +1.6 659,974 + +0.6 659,974 + -0.8 659,974 + +2.7 659,974 + -0.8 659,974 + +0.8 659,975 - +0.4 659,975 - -0.5 659,975 - +0.6 659,975 - +0.7 659,975 - -2.0 659,975 - +1.5 659,975 - +4.8 659,975 - +1.2 659,975 - +1.5 660,223 + PFLU_RS02875 0.63 +0.7 660,223 + PFLU_RS02875 0.63 +3.2 660,223 + PFLU_RS02875 0.63 +2.4 660,223 + PFLU_RS02875 0.63 +0.4 660,223 + PFLU_RS02875 0.63 -2.5 660,223 + PFLU_RS02875 0.63 +2.4 660,223 + PFLU_RS02875 0.63 +0.8 660,224 - PFLU_RS02875 0.63 +2.2 660,224 - PFLU_RS02875 0.63 -0.4 660,224 - PFLU_RS02875 0.63 -0.3 660,224 - PFLU_RS02875 0.63 +2.6 660,224 - PFLU_RS02875 0.63 +0.3 660,242 - PFLU_RS02875 0.69 +1.8 660,283 - PFLU_RS02875 0.83 +3.1 660,283 - PFLU_RS02875 0.83 +1.0 660,355 + -1.2 660,355 + +0.4 660,355 + +1.4 660,355 + -0.7 660,355 + +0.0 660,356 - +1.8 660,356 - +1.4 660,363 + +2.0 660,364 - -2.1 660,364 - +1.4 660,367 + -2.4 660,367 + +0.5 660,367 + -0.1 660,368 - -0.7 660,368 - +2.5 660,424 + -1.2 660,424 + -0.4 660,424 + -0.5 660,424 + +0.4 660,424 + -0.4 660,424 + +0.0 660,424 + -1.3 660,424 + +0.6 660,424 + +1.8 660,425 - -1.2 660,425 - +0.7 660,425 - +1.6 660,425 - +0.0 660,425 - -0.0 660,425 - -1.9 660,425 - -1.0 660,425 - +1.3 660,425 - -2.1 660,425 - -1.3 660,425 - +0.6 660,425 - +1.1 660,425 - +1.4 660,425 - +1.3 660,425 - +0.3 660,425 - +0.5 660,472 + +1.0 660,472 + +3.7 660,472 + -1.6 660,472 + +2.7 660,472 + +0.5 660,472 + +0.3 660,472 + +0.2 660,472 + +2.3 660,472 + +1.6 660,682 + PFLU_RS02880 0.24 -0.6 660,682 + PFLU_RS02880 0.24 -2.2 660,682 + PFLU_RS02880 0.24 +3.0 660,682 + PFLU_RS02880 0.24 -2.8 660,682 + PFLU_RS02880 0.24 +0.3 660,682 + PFLU_RS02880 0.24 -1.1 660,682 + PFLU_RS02880 0.24 -2.6 660,683 - PFLU_RS02880 0.24 +2.1 660,683 - PFLU_RS02880 0.24 -0.8 660,683 - PFLU_RS02880 0.24 +0.6 660,683 - PFLU_RS02880 0.24 +0.3 660,683 - PFLU_RS02880 0.24 +1.0 660,683 - PFLU_RS02880 0.24 -0.1 660,683 - PFLU_RS02880 0.24 -1.8 660,683 - PFLU_RS02880 0.24 -0.0 660,683 - PFLU_RS02880 0.24 +1.3 660,683 - PFLU_RS02880 0.24 -0.4 660,888 - PFLU_RS02880 0.48 -1.3 661,040 + PFLU_RS02880 0.67 +2.1 661,105 - PFLU_RS02880 0.74 -0.8 661,181 + PFLU_RS02880 0.83 +1.9 661,182 - PFLU_RS02880 0.83 +1.3 661,182 - PFLU_RS02880 0.83 +0.2
Or see this region's nucleotide sequence