Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27725

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
6,171,707	+		PFLU_RS27720	0.37	-1.3
6,171,707	+		PFLU_RS27720	0.37	-1.5
6,171,707	+		PFLU_RS27720	0.37	-2.0
6,171,707	+		PFLU_RS27720	0.37	+0.6
6,171,707	+		PFLU_RS27720	0.37	+0.5
6,171,707	+		PFLU_RS27720	0.37	+0.8
6,171,707	+		PFLU_RS27720	0.37	-1.8
6,171,707	+		PFLU_RS27720	0.37	-1.9
6,171,707	+		PFLU_RS27720	0.37	+0.1
6,171,708	-		PFLU_RS27720	0.38	-0.6
6,171,708	-		PFLU_RS27720	0.38	-0.3
6,171,708	-		PFLU_RS27720	0.38	-2.3
6,171,708	-		PFLU_RS27720	0.38	+2.8
6,171,708	-		PFLU_RS27720	0.38	-0.0
6,171,793	-		PFLU_RS27720	0.45	-1.2
6,171,793	-		PFLU_RS27720	0.45	+0.3
6,171,793	-		PFLU_RS27720	0.45	-3.0
6,171,872	+		PFLU_RS27720	0.52	-0.9
6,171,873	-		PFLU_RS27720	0.52	-1.7
6,172,131	+		PFLU_RS27720	0.76	-0.9
6,172,132	-		PFLU_RS27720	0.76	+0.1
6,172,239	+		PFLU_RS27720	0.86	+2.4
6,172,239	+		PFLU_RS27720	0.86	+1.3
6,172,239	+		PFLU_RS27720	0.86	-0.1
6,172,239	+		PFLU_RS27720	0.86	-2.1
6,172,239	+		PFLU_RS27720	0.86	+0.5
6,172,239	+		PFLU_RS27720	0.86	-1.2
6,172,240	-		PFLU_RS27720	0.86	-0.8
6,172,240	-		PFLU_RS27720	0.86	+3.9
6,172,240	-		PFLU_RS27720	0.86	+1.2
6,172,240	-		PFLU_RS27720	0.86	+0.1
6,172,240	-		PFLU_RS27720	0.86	+0.4
6,172,240	-		PFLU_RS27720	0.86	+2.1
6,172,285	-		PFLU_RS27720	0.90	-1.8
6,172,359	+				+2.7
6,172,359	+				+2.2
6,172,360	-				+0.1
6,172,447	-				+1.4
6,172,457	-				-1.7
6,172,586	+				+0.6
6,172,586	+				-2.5
6,172,586	+				-1.2
6,172,586	+				-2.6
6,172,586	+				+1.5
6,172,587	-				-1.1
6,172,587	-				+1.3
6,172,587	-				+0.2
6,172,650	-				+0.5
6,172,650	-				-2.2
6,172,650	-				+1.9
6,172,698	+				-1.9
6,172,698	+				+0.7
6,172,698	+				+1.2
6,172,698	+				+0.8
6,172,698	+				+1.9
6,172,698	+				+2.4
6,172,698	+				-1.3
6,172,698	+				-1.6
6,172,699	-				-1.0
6,172,699	-				+1.2
6,172,699	-				+0.3
6,172,699	-				-1.4
6,172,699	-				+0.9
6,172,699	-				+0.7
6,172,699	-				-0.7
6,172,699	-				-0.6
6,172,702	+				+0.5
6,172,702	+				-2.0
6,172,702	+				-1.3
6,172,702	+				-2.1
6,172,702	+				-0.9
6,172,702	+				+2.2
6,172,703	-				+1.1
6,172,703	-				+0.9
6,172,703	-				-0.5
6,172,703	-				+2.9
6,172,703	-				-1.2
6,172,703	-				+0.6
6,172,703	-				-2.5
6,172,703	-				-1.9
6,172,703	-				+0.2
6,172,719	+				+6.2
6,172,719	+				-0.9
6,172,719	+				+0.6
6,172,719	+				-0.8
6,172,719	+				+0.3
6,172,719	+				-0.3
6,172,719	+				-1.5
6,172,719	+				-2.5
6,172,719	+				+1.4
6,172,719	+				-0.3
6,172,719	+				-1.3
6,172,719	+				+2.4
6,172,719	+				+0.5
6,172,719	+				-0.1
6,172,719	+				+1.3
6,172,719	+				-0.1
6,172,719	+				+0.2
6,172,719	+				-1.2
6,172,720	-				-1.5
6,172,720	-				+0.1
6,172,720	-				-1.6
6,172,720	-				+3.9
6,172,720	-				+3.2
6,172,720	-				-0.4
6,172,720	-				-0.4
6,172,720	-				+0.1
6,172,720	-				+1.3
6,172,720	-				+0.5
6,172,720	-				-1.0
6,172,720	-				-2.3
6,172,720	-				-1.3
6,172,720	-				-1.4
6,172,720	-				-1.4
6,172,720	-				-0.2
6,172,720	-				+0.2
6,172,720	-				+1.3
6,172,720	-				-1.0
6,172,720	-				+3.6
6,172,720	-				+1.6
6,172,720	-				-0.1
6,172,720	-				+2.0
6,172,720	-				+3.3
6,172,787	+				-1.4
6,172,787	+				+0.1
6,172,787	+				-1.0
6,172,787	+				+0.5
6,172,788	-				+1.1
6,172,865	+		PFLU_RS27725	0.16	-1.5
6,172,865	+		PFLU_RS27725	0.16	+0.3
6,172,865	+		PFLU_RS27725	0.16	+0.2
6,172,866	-		PFLU_RS27725	0.16	+1.1
6,172,878	+		PFLU_RS27725	0.18	-1.0
6,172,879	-		PFLU_RS27725	0.18	-2.2
6,172,926	+		PFLU_RS27725	0.22	+1.5
6,172,926	+		PFLU_RS27725	0.22	-0.7
6,172,926	+		PFLU_RS27725	0.22	-0.5
6,172,926	+		PFLU_RS27725	0.22	+0.8
6,172,926	+		PFLU_RS27725	0.22	+1.6
6,172,926	+		PFLU_RS27725	0.22	-1.5
6,172,927	-		PFLU_RS27725	0.23	-2.6
6,172,927	-		PFLU_RS27725	0.23	-0.7
6,172,927	-		PFLU_RS27725	0.23	+2.7
6,172,927	-		PFLU_RS27725	0.23	-1.8
6,172,927	-		PFLU_RS27725	0.23	-3.0
6,173,105	+		PFLU_RS27725	0.41	-0.5
6,173,105	+		PFLU_RS27725	0.41	+0.6
6,173,105	+		PFLU_RS27725	0.41	-1.2
6,173,180	+		PFLU_RS27725	0.48	-0.5
6,173,181	-		PFLU_RS27725	0.48	-0.5
6,173,181	-		PFLU_RS27725	0.48	-1.2
6,173,181	-		PFLU_RS27725	0.48	-1.7
6,173,361	-		PFLU_RS27725	0.66	-0.3
6,173,691	+				-2.4
6,173,691	+				-2.0
6,173,691	+				+0.3
6,173,691	+				-1.6
6,173,691	+				+1.2
6,173,691	+				-0.6
6,173,691	+				+1.9
6,173,692	-				+0.7
6,173,692	-				+0.4
6,173,692	-				+1.2
6,173,692	-				+2.4
6,173,692	-				+1.4
6,173,692	-				+0.9
6,173,714	+				+0.2
6,173,714	+				-2.1
6,173,715	-				+1.2
6,173,721	+				+2.9
6,173,722	-				+1.0
6,173,722	-				-0.1
6,173,722	-				-0.3
6,173,727	+				+3.8
6,173,727	+				+2.2
6,173,727	+				+3.3
6,173,727	+				+0.3
6,173,728	-				-1.4
6,173,728	-				-1.5
6,173,728	-				+0.6
6,173,728	-				+0.8
6,173,728	-				+2.9
6,173,728	-				-1.1
6,173,732	+				+1.5
6,173,732	+				-2.2
6,173,732	+				+1.3
6,173,732	+				+2.9
6,173,732	+				+0.7
6,173,732	+				-1.0
6,173,732	+				+1.8
6,173,732	+				-0.7
6,173,732	+				+3.0
6,173,732	+				+0.5
6,173,732	+				+2.5
6,173,732	+				+0.9
6,173,733	-				-0.2
6,173,733	-				-2.0
6,173,733	-				-1.5
6,173,733	-				+1.8
6,173,736	+				+1.9
6,173,736	+				+0.3
6,173,736	+				-1.0
6,173,736	+				+0.7
6,173,736	+				+1.3
6,173,737	-				-0.2
6,173,737	-				+0.9
6,173,757	+				+1.5
6,173,757	+				+0.8
6,173,757	+				+2.1
6,173,757	+				+0.8
6,173,757	+				+1.7
6,173,758	-				-0.9
6,173,758	-				-1.8
6,173,758	-				+0.7
6,173,758	-				+1.4
6,173,758	-				-1.7
6,173,758	-				-0.5
6,173,760	+				+0.2
6,173,760	+				-1.5
6,173,760	+				+1.7
6,173,760	+				+0.3
6,173,761	-				-1.5
6,173,761	-				-1.6
6,173,761	-				-1.5
6,173,848	+		PFLU_RS27730	0.14	+3.5
6,173,863	+		PFLU_RS27730	0.16	+0.9
6,173,863	+		PFLU_RS27730	0.16	+2.4
6,173,864	-		PFLU_RS27730	0.16	+3.1
6,173,864	-		PFLU_RS27730	0.16	-2.2
6,174,008	+		PFLU_RS27730	0.35	+3.0
6,174,009	-		PFLU_RS27730	0.35	-1.5
6,174,067	+		PFLU_RS27730	0.43	+1.6
6,174,067	+		PFLU_RS27730	0.43	-1.8
6,174,067	+		PFLU_RS27730	0.43	-2.2
6,174,071	-		PFLU_RS27730	0.43	+0.9
6,174,135	+		PFLU_RS27730	0.51	+3.1
6,174,136	-		PFLU_RS27730	0.52	-1.6
6,174,164	-		PFLU_RS27730	0.55	+0.8
6,174,164	-		PFLU_RS27730	0.55	+3.3
6,174,164	-		PFLU_RS27730	0.55	+0.9
6,174,181	+		PFLU_RS27730	0.57	-1.8
6,174,181	+		PFLU_RS27730	0.57	-2.1
6,174,181	+		PFLU_RS27730	0.57	+1.7
6,174,181	+		PFLU_RS27730	0.57	+0.2
6,174,182	-		PFLU_RS27730	0.58	-0.8
6,174,182	-		PFLU_RS27730	0.58	-1.5
6,174,182	-		PFLU_RS27730	0.58	-1.4
6,174,182	-		PFLU_RS27730	0.58	+1.7
6,174,182	-		PFLU_RS27730	0.58	+3.5
6,174,197	-		PFLU_RS27730	0.60	+1.7
6,174,197	-		PFLU_RS27730	0.60	+0.5
6,174,227	-		PFLU_RS27730	0.64	-1.5
6,174,314	+		PFLU_RS27730	0.75	-1.2
6,174,315	-		PFLU_RS27730	0.75	+0.5
6,174,359	-		PFLU_RS27730	0.81	+0.1
6,174,359	-		PFLU_RS27730	0.81	-1.5
6,174,359	-		PFLU_RS27730	0.81	-0.5
6,174,359	-		PFLU_RS27730	0.81	-1.9
6,174,359	-		PFLU_RS27730	0.81	-2.5
6,174,460	+				+2.8
6,174,460	+				-0.1
6,174,460	+				+0.6
6,174,460	+				-1.1
6,174,461	-				+1.5
6,174,461	-				-1.1
6,174,461	-				-1.7
6,174,461	-				+0.7
6,174,461	-				-0.3
6,174,461	-				-1.3
6,174,461	-				+3.1
6,174,495	+				+0.5
6,174,495	+				+1.9
6,174,495	+				-1.9
6,174,496	-				-1.2
6,174,499	+				+1.4
6,174,499	+				+1.6
6,174,499	+				-2.3
6,174,499	+				-2.6
6,174,499	+				-0.1
6,174,499	+				-1.4
6,174,499	+				+0.5
6,174,499	+				-1.6
6,174,499	+				-0.1
6,174,499	+				-2.0
6,174,499	+				+2.2
6,174,500	-				+2.6
6,174,500	-				+0.7
6,174,500	-				+0.4
6,174,500	-				+1.9
6,174,500	-				-1.5
6,174,500	-				+0.9
6,174,500	-				+1.3
6,174,500	-				-0.5
6,174,500	-				-0.8
6,174,500	-				-1.9
6,174,500	-				+0.1
6,174,500	-				-1.3
6,174,500	-				+2.1
6,174,500	-				+0.3
6,174,500	-				-1.8
6,174,565	+				-1.4
6,174,565	+				+0.3
6,174,565	+				+0.5
6,174,565	+				+0.0
6,174,566	-				+0.6
6,174,566	-				-2.9
6,174,566	-				+0.7
6,174,637	-				-1.1
6,174,637	-				-1.1
6,174,637	-				-0.7