Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13970

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS13950 and PFLU_RS13955 are separated by 53 nucleotidesPFLU_RS13955 and PFLU_RS13960 overlap by 4 nucleotidesPFLU_RS13960 and PFLU_RS13965 overlap by 4 nucleotidesPFLU_RS13965 and PFLU_RS13970 are separated by 50 nucleotidesPFLU_RS13970 and PFLU_RS13975 are separated by 89 nucleotidesPFLU_RS13975 and PFLU_RS13980 are separated by 1 nucleotides PFLU_RS13950: PFLU_RS13950 - hypothetical protein, at 3,134,971 to 3,135,309 _RS13950 PFLU_RS13955: PFLU_RS13955 - hypothetical protein, at 3,135,363 to 3,135,578 _RS13955 PFLU_RS13960: PFLU_RS13960 - hypothetical protein, at 3,135,575 to 3,135,766 _RS13960 PFLU_RS13965: PFLU_RS13965 - hypothetical protein, at 3,135,763 to 3,136,017 _RS13965 PFLU_RS13970: PFLU_RS13970 - hypothetical protein, at 3,136,068 to 3,136,289 _RS13970 PFLU_RS13975: PFLU_RS13975 - hypothetical protein, at 3,136,379 to 3,136,978 _RS13975 PFLU_RS13980: PFLU_RS13980 - terminase, at 3,136,980 to 3,138,470 _RS13980 Position (kb) 3136 3137Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3135.139 kb on + strand, within PFLU_RS13950at 3135.139 kb on + strand, within PFLU_RS13950at 3135.140 kb on - strand, within PFLU_RS13950at 3135.140 kb on - strand, within PFLU_RS13950at 3135.140 kb on - strand, within PFLU_RS13950at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.450 kb on + strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.451 kb on - strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.507 kb on + strand, within PFLU_RS13955at 3135.508 kb on - strand, within PFLU_RS13955at 3135.508 kb on - strand, within PFLU_RS13955at 3135.636 kb on + strand, within PFLU_RS13960at 3135.636 kb on + strand, within PFLU_RS13960at 3135.930 kb on + strand, within PFLU_RS13965at 3135.931 kb on - strand, within PFLU_RS13965at 3135.931 kb on - strand, within PFLU_RS13965at 3135.960 kb on + strand, within PFLU_RS13965at 3135.960 kb on + strand, within PFLU_RS13965at 3135.960 kb on + strand, within PFLU_RS13965at 3135.961 kb on - strand, within PFLU_RS13965at 3135.961 kb on - strand, within PFLU_RS13965at 3135.961 kb on - strand, within PFLU_RS13965at 3136.015 kb on + strandat 3136.015 kb on + strandat 3136.015 kb on + strandat 3136.016 kb on - strandat 3136.016 kb on - strandat 3136.016 kb on - strandat 3136.016 kb on - strandat 3136.016 kb on - strandat 3136.058 kb on + strandat 3136.058 kb on + strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.059 kb on - strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.064 kb on + strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.065 kb on - strandat 3136.140 kb on - strand, within PFLU_RS13970at 3136.158 kb on + strand, within PFLU_RS13970at 3136.158 kb on + strand, within PFLU_RS13970at 3136.158 kb on + strand, within PFLU_RS13970at 3136.158 kb on + strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.159 kb on - strand, within PFLU_RS13970at 3136.223 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.235 kb on + strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.236 kb on - strand, within PFLU_RS13970at 3136.237 kb on + strand, within PFLU_RS13970at 3136.237 kb on + strand, within PFLU_RS13970at 3136.237 kb on + strand, within PFLU_RS13970at 3136.238 kb on - strand, within PFLU_RS13970at 3136.273 kb on + strandat 3136.274 kb on - strandat 3136.323 kb on + strandat 3136.364 kb on + strandat 3136.364 kb on + strandat 3136.365 kb on - strandat 3136.379 kb on - strandat 3136.450 kb on + strand, within PFLU_RS13975at 3136.451 kb on - strand, within PFLU_RS13975at 3136.470 kb on + strand, within PFLU_RS13975at 3136.471 kb on - strand, within PFLU_RS13975at 3136.723 kb on + strand, within PFLU_RS13975at 3136.962 kb on + strandat 3136.962 kb on + strandat 3136.962 kb on + strandat 3136.963 kb on - strandat 3136.963 kb on - strandat 3136.963 kb on - strandat 3136.979 kb on + strandat 3136.979 kb on + strandat 3136.979 kb on + strandat 3136.980 kb on - strandat 3137.030 kb on + strandat 3137.030 kb on + strandat 3137.031 kb on - strandat 3137.037 kb on + strandat 3137.038 kb on - strandat 3137.100 kb on + strandat 3137.101 kb on - strandat 3137.101 kb on - strandat 3137.117 kb on + strandat 3137.126 kb on + strandat 3137.127 kb on - strandat 3137.127 kb on - strandat 3137.127 kb on - strandat 3137.156 kb on + strand, within PFLU_RS13980at 3137.156 kb on + strand, within PFLU_RS13980at 3137.156 kb on + strand, within PFLU_RS13980at 3137.156 kb on + strand, within PFLU_RS13980at 3137.156 kb on + strand, within PFLU_RS13980at 3137.157 kb on - strand, within PFLU_RS13980at 3137.271 kb on + strand, within PFLU_RS13980at 3137.271 kb on + strand, within PFLU_RS13980at 3137.271 kb on + strand, within PFLU_RS13980at 3137.271 kb on + strand, within PFLU_RS13980at 3137.272 kb on - strand, within PFLU_RS13980at 3137.272 kb on - strand, within PFLU_RS13980at 3137.272 kb on - strand, within PFLU_RS13980at 3137.272 kb on - strand, within PFLU_RS13980at 3137.272 kb on - strand, within PFLU_RS13980at 3137.277 kb on + strand, within PFLU_RS13980

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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3,135,139 + PFLU_RS13950 0.50 -1.8
3,135,139 + PFLU_RS13950 0.50 +0.6
3,135,140 - PFLU_RS13950 0.50 -1.3
3,135,140 - PFLU_RS13950 0.50 +1.4
3,135,140 - PFLU_RS13950 0.50 -0.3
3,135,450 + PFLU_RS13955 0.40 +0.0
3,135,450 + PFLU_RS13955 0.40 -1.2
3,135,450 + PFLU_RS13955 0.40 -0.3
3,135,450 + PFLU_RS13955 0.40 -0.6
3,135,450 + PFLU_RS13955 0.40 +3.1
3,135,450 + PFLU_RS13955 0.40 -0.3
3,135,450 + PFLU_RS13955 0.40 +2.7
3,135,450 + PFLU_RS13955 0.40 -1.5
3,135,450 + PFLU_RS13955 0.40 -2.0
3,135,450 + PFLU_RS13955 0.40 +2.9
3,135,450 + PFLU_RS13955 0.40 +3.4
3,135,450 + PFLU_RS13955 0.40 +3.2
3,135,450 + PFLU_RS13955 0.40 +1.5
3,135,451 - PFLU_RS13955 0.41 -0.8
3,135,451 - PFLU_RS13955 0.41 -0.3
3,135,451 - PFLU_RS13955 0.41 -1.8
3,135,451 - PFLU_RS13955 0.41 +2.0
3,135,451 - PFLU_RS13955 0.41 +1.8
3,135,451 - PFLU_RS13955 0.41 +1.2
3,135,451 - PFLU_RS13955 0.41 -1.6
3,135,451 - PFLU_RS13955 0.41 +0.1
3,135,507 + PFLU_RS13955 0.67 -1.2
3,135,507 + PFLU_RS13955 0.67 -1.2
3,135,507 + PFLU_RS13955 0.67 +2.0
3,135,507 + PFLU_RS13955 0.67 -1.0
3,135,508 - PFLU_RS13955 0.67 +0.4
3,135,508 - PFLU_RS13955 0.67 -0.8
3,135,636 + PFLU_RS13960 0.32 -1.3
3,135,636 + PFLU_RS13960 0.32 +0.0
3,135,930 + PFLU_RS13965 0.65 -0.3
3,135,931 - PFLU_RS13965 0.66 -1.3
3,135,931 - PFLU_RS13965 0.66 -0.3
3,135,960 + PFLU_RS13965 0.77 +0.3
3,135,960 + PFLU_RS13965 0.77 -0.9
3,135,960 + PFLU_RS13965 0.77 -0.2
3,135,961 - PFLU_RS13965 0.78 -1.2
3,135,961 - PFLU_RS13965 0.78 +1.5
3,135,961 - PFLU_RS13965 0.78 +0.3
3,136,015 + +1.0
3,136,015 + -1.0
3,136,015 + +2.3
3,136,016 - -0.8
3,136,016 - +0.0
3,136,016 - +5.0
3,136,016 - -0.3
3,136,016 - +1.6
3,136,058 + +1.0
3,136,058 + -1.3
3,136,059 - +0.6
3,136,059 - +2.4
3,136,059 - -1.0
3,136,059 - +0.3
3,136,059 - -1.7
3,136,059 - +1.8
3,136,064 + +0.3
3,136,064 + +1.1
3,136,064 + -1.0
3,136,064 + +0.4
3,136,065 - -0.3
3,136,065 - +2.6
3,136,065 - +4.9
3,136,065 - +1.0
3,136,065 - -0.3
3,136,065 - +2.0
3,136,065 - +3.9
3,136,065 - -0.6
3,136,065 - -2.1
3,136,065 - +0.0
3,136,140 - PFLU_RS13970 0.32 +0.3
3,136,158 + PFLU_RS13970 0.41 -1.5
3,136,158 + PFLU_RS13970 0.41 +3.7
3,136,158 + PFLU_RS13970 0.41 +1.0
3,136,158 + PFLU_RS13970 0.41 -1.7
3,136,159 - PFLU_RS13970 0.41 +0.2
3,136,159 - PFLU_RS13970 0.41 +2.4
3,136,159 - PFLU_RS13970 0.41 -0.8
3,136,159 - PFLU_RS13970 0.41 +0.3
3,136,159 - PFLU_RS13970 0.41 +1.2
3,136,159 - PFLU_RS13970 0.41 +0.0
3,136,159 - PFLU_RS13970 0.41 +1.0
3,136,223 + PFLU_RS13970 0.70 -1.5
3,136,235 + PFLU_RS13970 0.75 -1.3
3,136,235 + PFLU_RS13970 0.75 -0.5
3,136,235 + PFLU_RS13970 0.75 -0.8
3,136,235 + PFLU_RS13970 0.75 -0.3
3,136,235 + PFLU_RS13970 0.75 -1.9
3,136,235 + PFLU_RS13970 0.75 -1.5
3,136,235 + PFLU_RS13970 0.75 +1.8
3,136,235 + PFLU_RS13970 0.75 -1.8
3,136,235 + PFLU_RS13970 0.75 -1.5
3,136,235 + PFLU_RS13970 0.75 -0.1
3,136,235 + PFLU_RS13970 0.75 -0.8
3,136,235 + PFLU_RS13970 0.75 +0.0
3,136,235 + PFLU_RS13970 0.75 +4.6
3,136,235 + PFLU_RS13970 0.75 +0.0
3,136,235 + PFLU_RS13970 0.75 +0.4
3,136,235 + PFLU_RS13970 0.75 -0.8
3,136,235 + PFLU_RS13970 0.75 +2.5
3,136,235 + PFLU_RS13970 0.75 +2.4
3,136,235 + PFLU_RS13970 0.75 +2.2
3,136,235 + PFLU_RS13970 0.75 +0.9
3,136,235 + PFLU_RS13970 0.75 -1.0
3,136,235 + PFLU_RS13970 0.75 +0.6
3,136,235 + PFLU_RS13970 0.75 -1.3
3,136,235 + PFLU_RS13970 0.75 +1.7
3,136,235 + PFLU_RS13970 0.75 -2.5
3,136,236 - PFLU_RS13970 0.76 -1.2
3,136,236 - PFLU_RS13970 0.76 +3.5
3,136,236 - PFLU_RS13970 0.76 -1.0
3,136,236 - PFLU_RS13970 0.76 -0.3
3,136,236 - PFLU_RS13970 0.76 -1.2
3,136,236 - PFLU_RS13970 0.76 -1.3
3,136,236 - PFLU_RS13970 0.76 +5.4
3,136,236 - PFLU_RS13970 0.76 +2.2
3,136,236 - PFLU_RS13970 0.76 +0.7
3,136,236 - PFLU_RS13970 0.76 +1.3
3,136,236 - PFLU_RS13970 0.76 +0.4
3,136,236 - PFLU_RS13970 0.76 +4.7
3,136,236 - PFLU_RS13970 0.76 +4.1
3,136,236 - PFLU_RS13970 0.76 +2.0
3,136,236 - PFLU_RS13970 0.76 -2.1
3,136,236 - PFLU_RS13970 0.76 +4.6
3,136,236 - PFLU_RS13970 0.76 +0.0
3,136,236 - PFLU_RS13970 0.76 +1.4
3,136,236 - PFLU_RS13970 0.76 +1.0
3,136,236 - PFLU_RS13970 0.76 +0.7
3,136,237 + PFLU_RS13970 0.76 +2.1
3,136,237 + PFLU_RS13970 0.76 -1.8
3,136,237 + PFLU_RS13970 0.76 +0.4
3,136,238 - PFLU_RS13970 0.77 +1.2
3,136,273 + -1.0
3,136,274 - +2.6
3,136,323 + +1.4
3,136,364 + +2.0
3,136,364 + +1.2
3,136,365 - -1.3
3,136,379 - -2.2
3,136,450 + PFLU_RS13975 0.12 -0.6
3,136,451 - PFLU_RS13975 0.12 -0.3
3,136,470 + PFLU_RS13975 0.15 +2.0
3,136,471 - PFLU_RS13975 0.15 -0.4
3,136,723 + PFLU_RS13975 0.57 -1.2
3,136,962 + -1.6
3,136,962 + -0.3
3,136,962 + -0.3
3,136,963 - -0.8
3,136,963 - +2.3
3,136,963 - -0.6
3,136,979 + -2.3
3,136,979 + -1.5
3,136,979 + -2.5
3,136,980 - -0.6
3,137,030 + -0.3
3,137,030 + -0.6
3,137,031 - -0.6
3,137,037 + -0.3
3,137,038 - -0.8
3,137,100 + -0.6
3,137,101 - -0.3
3,137,101 - +0.4
3,137,117 + +0.8
3,137,126 + +1.9
3,137,127 - +1.0
3,137,127 - -1.2
3,137,127 - -1.5
3,137,156 + PFLU_RS13980 0.12 -0.1
3,137,156 + PFLU_RS13980 0.12 +0.0
3,137,156 + PFLU_RS13980 0.12 +1.0
3,137,156 + PFLU_RS13980 0.12 -1.3
3,137,156 + PFLU_RS13980 0.12 +1.5
3,137,157 - PFLU_RS13980 0.12 +1.0
3,137,271 + PFLU_RS13980 0.20 +2.2
3,137,271 + PFLU_RS13980 0.20 -1.8
3,137,271 + PFLU_RS13980 0.20 -1.5
3,137,271 + PFLU_RS13980 0.20 +2.8
3,137,272 - PFLU_RS13980 0.20 -0.8
3,137,272 - PFLU_RS13980 0.20 -1.2
3,137,272 - PFLU_RS13980 0.20 +0.1
3,137,272 - PFLU_RS13980 0.20 -0.6
3,137,272 - PFLU_RS13980 0.20 +0.1
3,137,277 + PFLU_RS13980 0.20 -2.2

Or see this region's nucleotide sequence