Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12410

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
2,750,642	+		PFLU_RS12405	0.31	+0.6
2,750,642	+		PFLU_RS12405	0.31	-1.6
2,750,642	+		PFLU_RS12405	0.31	+3.0
2,750,642	+		PFLU_RS12405	0.31	-1.0
2,750,642	+		PFLU_RS12405	0.31	+0.6
2,750,642	+		PFLU_RS12405	0.31	+2.0
2,750,643	-		PFLU_RS12405	0.31	-3.1
2,750,643	-		PFLU_RS12405	0.31	+1.9
2,750,699	+		PFLU_RS12405	0.37	+3.0
2,750,699	+		PFLU_RS12405	0.37	-1.5
2,750,699	+		PFLU_RS12405	0.37	-1.6
2,750,699	+		PFLU_RS12405	0.37	-1.6
2,750,700	-		PFLU_RS12405	0.37	+1.0
2,750,700	-		PFLU_RS12405	0.37	+1.3
2,750,700	-		PFLU_RS12405	0.37	+2.1
2,750,700	-		PFLU_RS12405	0.37	-1.6
2,750,700	-		PFLU_RS12405	0.37	+2.0
2,750,700	-		PFLU_RS12405	0.37	-2.0
2,750,700	-		PFLU_RS12405	0.37	+2.0
2,750,757	+		PFLU_RS12405	0.43	+0.2
2,750,757	+		PFLU_RS12405	0.43	-2.2
2,750,775	+		PFLU_RS12405	0.45	-1.6
2,750,931	+		PFLU_RS12405	0.61	-0.6
2,751,007	+		PFLU_RS12405	0.69	+1.8
2,751,008	-		PFLU_RS12405	0.69	-1.7
2,751,305	+				-1.3
2,751,305	+				-1.7
2,751,305	+				+0.8
2,751,305	+				-0.8
2,751,306	-				-1.2
2,751,306	-				+0.1
2,751,306	-				+0.4
2,751,316	+				+2.2
2,751,316	+				-0.1
2,751,316	+				+1.3
2,751,316	+				-0.6
2,751,316	+				-1.0
2,751,316	+				-1.7
2,751,317	-				-1.4
2,751,317	-				+1.6
2,751,317	-				+2.2
2,751,317	-				+0.4
2,751,317	-				+2.6
2,751,321	+				-0.7
2,751,321	+				-1.2
2,751,321	+				-0.6
2,751,321	+				-1.9
2,751,321	+				+0.0
2,751,321	+				+0.0
2,751,322	-				+1.0
2,751,322	-				+0.6
2,751,322	-				-1.3
2,751,322	-				+0.4
2,751,323	+				-0.8
2,751,323	+				+1.0
2,751,323	+				+0.3
2,751,324	-				-2.6
2,751,324	-				+0.4
2,751,339	+				+0.8
2,751,340	-				-0.8
2,751,340	-				-2.2
2,751,340	-				-0.6
2,751,340	-				+0.9
2,751,340	-				-2.6
2,751,399	+				-1.4
2,751,399	+				+0.6
2,751,399	+				+4.5
2,751,400	-				-0.2
2,751,400	-				+3.3
2,751,400	-				+0.8
2,751,400	-				-0.6
2,751,467	+				-1.7
2,751,467	+				+0.4
2,751,467	+				+0.8
2,751,467	+				+1.7
2,751,467	+				+0.8
2,751,467	+				+1.6
2,751,467	+				-1.2
2,751,467	+				+0.3
2,751,468	-				-1.0
2,751,468	-				-1.4
2,751,468	-				+1.2
2,751,468	-				-0.3
2,751,468	-				+1.1
2,751,468	-				-1.7
2,751,468	-				+2.0
2,751,468	-				+0.0
2,751,471	+				-2.1
2,751,471	+				-0.0
2,751,471	+				-0.8
2,751,471	+				-1.3
2,751,471	+				-0.7
2,751,471	+				+0.8
2,751,471	+				-1.3
2,751,471	+				+0.4
2,751,471	+				+3.2
2,751,471	+				+0.0
2,751,471	+				-0.3
2,751,471	+				+0.2
2,751,471	+				+0.4
2,751,471	+				-1.7
2,751,471	+				-0.4
2,751,471	+				-1.7
2,751,471	+				+0.1
2,751,471	+				+3.0
2,751,471	+				-0.5
2,751,471	+				+2.3
2,751,471	+				-0.6
2,751,472	-				-1.0
2,751,472	-				+0.1
2,751,472	-				+0.4
2,751,472	-				-2.3
2,751,472	-				-1.3
2,751,472	-				-1.0
2,751,472	-				-2.2
2,751,472	-				-1.2
2,751,472	-				-1.8
2,751,472	-				+0.4
2,751,472	-				-0.3
2,751,472	-				-0.4
2,751,472	-				+2.3
2,751,472	-				+0.3
2,751,472	-				-2.2
2,751,472	-				-1.8
2,751,472	-				+0.0
2,751,472	-				-0.3
2,751,472	-				-1.0
2,751,472	-				+0.0
2,751,472	-				-1.2
2,751,472	-				+1.0
2,751,472	-				-1.4
2,751,630	-		PFLU_RS12410	0.20	-0.3
2,751,630	-		PFLU_RS12410	0.20	+3.3
2,751,630	-		PFLU_RS12410	0.20	+0.9
2,751,810	+		PFLU_RS12410	0.33	-1.4
2,751,810	+		PFLU_RS12410	0.33	-0.6
2,751,810	+		PFLU_RS12410	0.33	+0.8
2,751,810	+		PFLU_RS12410	0.33	+0.4
2,751,810	+		PFLU_RS12410	0.33	-0.3
2,751,811	-		PFLU_RS12410	0.33	+1.0
2,751,811	-		PFLU_RS12410	0.33	-2.1
2,751,811	-		PFLU_RS12410	0.33	-0.8
2,751,955	-		PFLU_RS12410	0.44	+1.5
2,751,955	-		PFLU_RS12410	0.44	+1.0
2,751,955	-		PFLU_RS12410	0.44	-1.4
2,751,955	-		PFLU_RS12410	0.44	-0.3
2,751,980	-		PFLU_RS12410	0.46	+0.4
2,752,013	+		PFLU_RS12410	0.48	+2.1
2,752,094	+		PFLU_RS12410	0.54	+1.4
2,752,195	-		PFLU_RS12410	0.61	+1.3
2,752,221	+		PFLU_RS12410	0.63	-0.6
2,752,221	+		PFLU_RS12410	0.63	+0.4
2,752,221	+		PFLU_RS12410	0.63	+2.0
2,752,221	+		PFLU_RS12410	0.63	+0.5
2,752,221	+		PFLU_RS12410	0.63	-2.4
2,752,221	+		PFLU_RS12410	0.63	+1.4
2,752,221	+		PFLU_RS12410	0.63	-1.2
2,752,221	+		PFLU_RS12410	0.63	+2.6
2,752,221	+		PFLU_RS12410	0.63	+2.1
2,752,221	+		PFLU_RS12410	0.63	-1.9
2,752,221	+		PFLU_RS12410	0.63	-2.3
2,752,221	+		PFLU_RS12410	0.63	-0.2
2,752,221	+		PFLU_RS12410	0.63	-1.9
2,752,222	-		PFLU_RS12410	0.63	+2.0
2,752,222	-		PFLU_RS12410	0.63	-1.2
2,752,222	-		PFLU_RS12410	0.63	-1.9
2,752,222	-		PFLU_RS12410	0.63	-1.2
2,752,222	-		PFLU_RS12410	0.63	+0.4
2,752,222	-		PFLU_RS12410	0.63	+1.0
2,752,222	-		PFLU_RS12410	0.63	+0.8
2,752,222	-		PFLU_RS12410	0.63	+0.6
2,752,222	-		PFLU_RS12410	0.63	-0.3
2,752,222	-		PFLU_RS12410	0.63	-2.3
2,752,222	-		PFLU_RS12410	0.63	+3.5
2,752,222	-		PFLU_RS12410	0.63	+1.3
2,752,350	-		PFLU_RS12410	0.73	-2.1
2,752,374	+		PFLU_RS12410	0.75	-1.4
2,752,374	+		PFLU_RS12410	0.75	+1.0
2,752,374	+		PFLU_RS12410	0.75	-1.4
2,752,374	+		PFLU_RS12410	0.75	-1.9
2,752,375	-		PFLU_RS12410	0.75	-0.6
2,752,375	-		PFLU_RS12410	0.75	-1.3
2,752,375	-		PFLU_RS12410	0.75	+1.6
2,752,375	-		PFLU_RS12410	0.75	-0.2
2,752,375	-		PFLU_RS12410	0.75	-1.9
2,752,375	-		PFLU_RS12410	0.75	+0.0
2,752,375	-		PFLU_RS12410	0.75	-2.5
2,752,375	-		PFLU_RS12410	0.75	+1.3
2,752,584	+				-2.0
2,752,584	+				+1.2
2,752,584	+				-1.4
2,752,584	+				-0.6
2,752,584	+				-0.6
2,752,585	-				+2.0
2,752,641	+				-2.4
2,752,641	+				-2.7
2,752,641	+				+1.0
2,752,641	+				+3.0
2,752,641	+				+0.4
2,752,641	+				-2.9
2,752,642	-				+1.6
2,752,642	-				+3.5
2,752,642	-				+2.9
2,752,642	-				+1.9
2,752,642	-				-2.2
2,752,642	-				-0.9
2,752,642	-				+3.8
2,752,642	-				-0.7
2,752,642	-				-1.2
2,752,657	+				+0.0
2,752,671	+				+0.0
2,752,671	+				-2.0
2,752,672	-				-0.6
2,752,674	+				-0.8
2,752,716	+				-1.4
2,752,716	+				-1.8
2,752,716	+				-0.6
2,752,716	+				-1.6
2,752,716	+				+0.9
2,752,716	+				+2.1
2,752,717	-				+1.4
2,752,717	-				-0.6
2,752,717	-				-0.4
2,752,945	+		PFLU_RS12415	0.41	-0.8
2,752,946	-		PFLU_RS12415	0.41	-1.4
2,753,006	+		PFLU_RS12415	0.52	+0.7
2,753,007	-		PFLU_RS12415	0.52	+3.0
2,753,068	+		PFLU_RS12415	0.62	-1.2
2,753,068	+		PFLU_RS12415	0.62	+0.7
2,753,068	+		PFLU_RS12415	0.62	+0.4
2,753,068	+		PFLU_RS12415	0.62	-0.9
2,753,068	+		PFLU_RS12415	0.62	-1.2
2,753,068	+		PFLU_RS12415	0.62	+1.0
2,753,068	+		PFLU_RS12415	0.62	-2.8
2,753,068	+		PFLU_RS12415	0.62	+2.6
2,753,069	-		PFLU_RS12415	0.62	-1.3
2,753,069	-		PFLU_RS12415	0.62	+0.0
2,753,069	-		PFLU_RS12415	0.62	-0.2
2,753,069	-		PFLU_RS12415	0.62	+1.0
2,753,069	-		PFLU_RS12415	0.62	+1.6
2,753,144	+		PFLU_RS12415	0.75	-2.0
2,753,144	+		PFLU_RS12415	0.75	-0.3
2,753,144	+		PFLU_RS12415	0.75	+1.1
2,753,144	+		PFLU_RS12415	0.75	+0.9
2,753,144	+		PFLU_RS12415	0.75	-0.3
2,753,144	+		PFLU_RS12415	0.75	-0.8
2,753,144	+		PFLU_RS12415	0.75	+0.5
2,753,144	+		PFLU_RS12415	0.75	+1.1
2,753,144	+		PFLU_RS12415	0.75	+0.1
2,753,145	-		PFLU_RS12415	0.75	-2.7
2,753,145	-		PFLU_RS12415	0.75	+0.0
2,753,204	+		PFLU_RS12415	0.85	+2.0
2,753,292	+				+3.1
2,753,292	+				-0.3
2,753,292	+				-2.1
2,753,292	+				+0.7
2,753,292	+				+1.0
2,753,292	+				-0.6
2,753,292	+				+1.3
2,753,292	+				-1.0
2,753,292	+				+0.0
2,753,292	+				-0.2
2,753,292	+				+3.3
2,753,292	+				-1.4
2,753,292	+				+1.9
2,753,292	+				+2.3
2,753,292	+				-1.9
2,753,293	-				-0.8
2,753,293	-				+1.6
2,753,293	-				-1.7
2,753,293	-				-2.4
2,753,293	-				+3.8
2,753,293	-				+4.2
2,753,293	-				-1.3
2,753,293	-				+2.9
2,753,293	-				+2.4
2,753,325	+				+0.8
2,753,325	+				+0.6
2,753,325	+				-1.2
2,753,334	+				+2.1
2,753,335	-				-0.3
2,753,357	+				-2.4
2,753,358	-				-2.0
2,753,358	-				+1.4
2,753,366	+				-1.3
2,753,366	+				+3.9
2,753,367	-				-2.0
2,753,367	-				-0.8
2,753,370	+				-0.6
2,753,370	+				-0.3
2,753,370	+				+0.6
2,753,370	+				-1.9
2,753,371	-				-1.2
2,753,393	+				-0.2
2,753,393	+				+0.6
2,753,393	+				-1.9
2,753,394	-				-2.2
2,753,394	-				-1.0
2,753,394	-				-0.2
2,753,394	-				+2.1
2,753,483	-				+2.0
2,753,504	+				+1.0
2,753,504	+				+2.6
2,753,505	-				-0.8
2,753,505	-				-1.0
2,753,505	-				+1.4
2,753,629	+		PFLU_RS12420	0.17	-1.9
2,753,629	+		PFLU_RS12420	0.17	-1.2
2,753,649	+		PFLU_RS12420	0.19	-0.9
2,753,650	-		PFLU_RS12420	0.19	-0.6