Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05370

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
1,196,367	+				+1.8
1,196,367	+				-0.2
1,196,368	-				+2.7
1,196,393	+				-2.3
1,196,393	+				-1.7
1,196,393	+				+1.9
1,196,393	+				-0.7
1,196,393	+				-0.3
1,196,393	+				-0.3
1,196,394	-				-1.4
1,196,394	-				+2.3
1,196,394	-				+1.2
1,196,394	-				-1.0
1,196,462	+				-0.5
1,196,462	+				-1.7
1,196,462	+				+1.0
1,196,462	+				-0.8
1,196,462	+				-0.5
1,196,462	+				-2.3
1,196,463	-				+2.6
1,196,463	-				-1.1
1,196,463	-				-1.4
1,196,463	-				-0.3
1,196,463	-				-0.6
1,196,463	-				+2.0
1,196,463	-				-1.6
1,196,463	-				-0.8
1,196,463	-				-0.3
1,196,463	-				+1.4
1,196,463	-				-1.7
1,196,463	-				-2.6
1,196,463	-				+0.6
1,196,466	+				-1.7
1,196,466	+				+3.8
1,196,466	+				-0.7
1,196,466	+				-1.8
1,196,466	+				-1.6
1,196,466	+				+0.7
1,196,467	-				-0.6
1,196,467	-				+0.4
1,196,467	-				+0.8
1,196,467	-				+0.9
1,196,467	-				-1.4
1,196,467	-				-1.9
1,196,467	-				+2.9
1,196,467	-				+3.3
1,196,515	-				-2.3
1,196,535	+				+0.7
1,196,535	+				-0.5
1,196,535	+				-1.1
1,196,535	+				+1.6
1,196,535	+				+1.4
1,196,535	+				-2.0
1,196,535	+				+1.7
1,196,536	-				+0.1
1,196,536	-				-1.3
1,196,536	-				-2.7
1,196,569	+				+0.8
1,196,569	+				+0.1
1,196,570	-				+1.7
1,196,588	+				+1.0
1,196,651	+				-0.5
1,196,652	-				-1.9
1,196,652	-				-2.0
1,196,899	+		PFLU_RS05365	0.33	+2.9
1,196,926	+		PFLU_RS05365	0.37	+3.7
1,196,926	+		PFLU_RS05365	0.37	+1.1
1,196,927	-		PFLU_RS05365	0.37	+5.7
1,196,935	+		PFLU_RS05365	0.38	+1.2
1,196,936	-		PFLU_RS05365	0.38	+1.9
1,196,936	-		PFLU_RS05365	0.38	-0.7
1,196,936	-		PFLU_RS05365	0.38	+1.3
1,196,951	+		PFLU_RS05365	0.41	+1.1
1,196,951	+		PFLU_RS05365	0.41	-0.5
1,196,951	+		PFLU_RS05365	0.41	+0.7
1,196,951	+		PFLU_RS05365	0.41	-1.7
1,196,952	-		PFLU_RS05365	0.41	-1.2
1,196,952	-		PFLU_RS05365	0.41	+0.4
1,196,952	-		PFLU_RS05365	0.41	-1.2
1,196,991	-		PFLU_RS05365	0.47	-0.8
1,197,026	-		PFLU_RS05365	0.52	+0.2
1,197,077	+		PFLU_RS05365	0.59	-2.1
1,197,077	+		PFLU_RS05365	0.59	-1.7
1,197,077	+		PFLU_RS05365	0.59	+1.0
1,197,077	+		PFLU_RS05365	0.59	-0.5
1,197,077	+		PFLU_RS05365	0.59	+0.8
1,197,077	+		PFLU_RS05365	0.59	+0.9
1,197,078	-		PFLU_RS05365	0.59	-1.2
1,197,078	-		PFLU_RS05365	0.59	-0.1
1,197,078	-		PFLU_RS05365	0.59	+1.9
1,197,078	-		PFLU_RS05365	0.59	+2.2
1,197,078	-		PFLU_RS05365	0.59	-0.9
1,197,078	-		PFLU_RS05365	0.59	+0.4
1,197,078	-		PFLU_RS05365	0.59	-0.8
1,197,078	-		PFLU_RS05365	0.59	+2.1
1,197,078	-		PFLU_RS05365	0.59	-2.0
1,197,078	-		PFLU_RS05365	0.59	-1.7
1,197,078	-		PFLU_RS05365	0.59	-0.1
1,197,079	+		PFLU_RS05365	0.60	-0.7
1,197,079	+		PFLU_RS05365	0.60	+1.0
1,197,079	+		PFLU_RS05365	0.60	-3.1
1,197,079	+		PFLU_RS05365	0.60	-1.2
1,197,079	+		PFLU_RS05365	0.60	-0.5
1,197,080	-		PFLU_RS05365	0.60	-3.0
1,197,080	-		PFLU_RS05365	0.60	-1.1
1,197,080	-		PFLU_RS05365	0.60	+3.2
1,197,080	-		PFLU_RS05365	0.60	-0.1
1,197,080	-		PFLU_RS05365	0.60	-0.5
1,197,080	-		PFLU_RS05365	0.60	+0.6
1,197,080	-		PFLU_RS05365	0.60	-0.2
1,197,080	-		PFLU_RS05365	0.60	+1.0
1,197,080	-		PFLU_RS05365	0.60	-0.9
1,197,080	-		PFLU_RS05365	0.60	+3.1
1,197,080	-		PFLU_RS05365	0.60	-0.7
1,197,083	+		PFLU_RS05365	0.60	+0.2
1,197,083	+		PFLU_RS05365	0.60	-0.6
1,197,083	+		PFLU_RS05365	0.60	+1.1
1,197,083	+		PFLU_RS05365	0.60	-1.0
1,197,083	+		PFLU_RS05365	0.60	+1.3
1,197,083	+		PFLU_RS05365	0.60	-0.7
1,197,083	+		PFLU_RS05365	0.60	-0.5
1,197,083	+		PFLU_RS05365	0.60	-1.1
1,197,083	+		PFLU_RS05365	0.60	+1.7
1,197,083	+		PFLU_RS05365	0.60	+0.9
1,197,083	+		PFLU_RS05365	0.60	+1.1
1,197,083	+		PFLU_RS05365	0.60	-1.7
1,197,083	+		PFLU_RS05365	0.60	+0.3
1,197,083	+		PFLU_RS05365	0.60	+0.9
1,197,083	+		PFLU_RS05365	0.60	-0.5
1,197,083	+		PFLU_RS05365	0.60	+1.3
1,197,083	+		PFLU_RS05365	0.60	+1.5
1,197,083	+		PFLU_RS05365	0.60	+1.8
1,197,083	+		PFLU_RS05365	0.60	-0.0
1,197,083	+		PFLU_RS05365	0.60	+1.5
1,197,083	+		PFLU_RS05365	0.60	-0.7
1,197,083	+		PFLU_RS05365	0.60	-0.9
1,197,083	+		PFLU_RS05365	0.60	-2.0
1,197,084	-		PFLU_RS05365	0.60	+1.7
1,197,084	-		PFLU_RS05365	0.60	-0.0
1,197,084	-		PFLU_RS05365	0.60	+0.4
1,197,084	-		PFLU_RS05365	0.60	-0.3
1,197,084	-		PFLU_RS05365	0.60	+1.5
1,197,084	-		PFLU_RS05365	0.60	+2.1
1,197,084	-		PFLU_RS05365	0.60	+2.4
1,197,084	-		PFLU_RS05365	0.60	+2.0
1,197,084	-		PFLU_RS05365	0.60	+0.3
1,197,084	-		PFLU_RS05365	0.60	-0.8
1,197,084	-		PFLU_RS05365	0.60	-0.8
1,197,084	-		PFLU_RS05365	0.60	-1.4
1,197,084	-		PFLU_RS05365	0.60	-0.7
1,197,084	-		PFLU_RS05365	0.60	-0.3
1,197,084	-		PFLU_RS05365	0.60	+2.3
1,197,084	-		PFLU_RS05365	0.60	-2.0
1,197,084	-		PFLU_RS05365	0.60	+0.7
1,197,084	-		PFLU_RS05365	0.60	+0.2
1,197,084	-		PFLU_RS05365	0.60	-1.1
1,197,084	-		PFLU_RS05365	0.60	+0.4
1,197,084	-		PFLU_RS05365	0.60	+0.1
1,197,084	-		PFLU_RS05365	0.60	-1.7
1,197,084	-		PFLU_RS05365	0.60	+3.8
1,197,084	-		PFLU_RS05365	0.60	+1.7
1,197,161	+		PFLU_RS05365	0.72	-0.0
1,197,161	+		PFLU_RS05365	0.72	+1.0
1,197,175	-		PFLU_RS05365	0.74	-1.6
1,197,175	-		PFLU_RS05365	0.74	-2.2
1,197,196	+		PFLU_RS05365	0.77	+2.7
1,197,350	+				+0.9
1,197,350	+				+2.4
1,197,350	+				-0.8
1,197,350	+				+3.2
1,197,351	-				+1.2
1,197,351	-				-1.2
1,197,351	-				-2.5
1,197,414	+				+0.1
1,197,414	+				+0.9
1,197,414	+				-1.7
1,197,414	+				+4.0
1,197,414	+				+0.1
1,197,414	+				-1.2
1,197,415	-				+1.1
1,197,415	-				+3.3
1,197,415	-				+0.9
1,197,415	-				-3.3
1,197,415	-				-1.5
1,197,415	-				-1.5
1,197,415	-				+1.7
1,197,626	+		PFLU_RS05370	0.12	-0.8
1,197,626	+		PFLU_RS05370	0.12	-1.3
1,197,626	+		PFLU_RS05370	0.12	+0.1
1,197,627	-		PFLU_RS05370	0.12	+0.5
1,197,627	-		PFLU_RS05370	0.12	-2.0
1,197,632	+		PFLU_RS05370	0.13	+0.2
1,197,632	+		PFLU_RS05370	0.13	-0.7
1,197,632	+		PFLU_RS05370	0.13	+1.5
1,197,632	+		PFLU_RS05370	0.13	+0.4
1,197,633	-		PFLU_RS05370	0.13	-1.0
1,197,633	-		PFLU_RS05370	0.13	+1.6
1,197,633	-		PFLU_RS05370	0.13	-1.7
1,197,633	-		PFLU_RS05370	0.13	-0.5
1,197,971	-		PFLU_RS05370	0.27	-0.6
1,197,971	-		PFLU_RS05370	0.27	+2.8
1,197,971	-		PFLU_RS05370	0.27	-0.3
1,197,983	+		PFLU_RS05370	0.28	-0.5
1,198,095	-		PFLU_RS05370	0.32	-1.2
1,198,271	+		PFLU_RS05370	0.40	+0.7
1,198,494	+		PFLU_RS05370	0.49	-1.4
1,198,494	+		PFLU_RS05370	0.49	-0.1
1,198,494	+		PFLU_RS05370	0.49	-1.4
1,198,494	+		PFLU_RS05370	0.49	-0.5
1,198,495	-		PFLU_RS05370	0.49	-0.5
1,198,495	-		PFLU_RS05370	0.49	-1.3
1,198,495	-		PFLU_RS05370	0.49	-1.0
1,198,558	+		PFLU_RS05370	0.52	+1.5
1,198,558	+		PFLU_RS05370	0.52	+0.7
1,198,558	+		PFLU_RS05370	0.52	+1.7
1,198,558	+		PFLU_RS05370	0.52	+1.3
1,198,558	+		PFLU_RS05370	0.52	-1.7
1,198,558	+		PFLU_RS05370	0.52	+1.1
1,198,559	-		PFLU_RS05370	0.52	+2.2
1,198,559	-		PFLU_RS05370	0.52	-1.9
1,198,559	-		PFLU_RS05370	0.52	-0.8
1,198,796	+		PFLU_RS05370	0.62	-1.4
1,198,796	+		PFLU_RS05370	0.62	+0.7
1,198,796	+		PFLU_RS05370	0.62	-1.4
1,198,796	+		PFLU_RS05370	0.62	-0.8
1,198,797	-		PFLU_RS05370	0.62	+0.5
1,198,797	-		PFLU_RS05370	0.62	+0.1
1,198,797	-		PFLU_RS05370	0.62	+2.0
1,198,797	-		PFLU_RS05370	0.62	+0.7
1,198,797	-		PFLU_RS05370	0.62	+3.5
1,198,863	+		PFLU_RS05370	0.65	-1.5
1,198,863	+		PFLU_RS05370	0.65	-0.2
1,198,863	+		PFLU_RS05370	0.65	+1.2
1,198,863	+		PFLU_RS05370	0.65	-0.8
1,198,864	-		PFLU_RS05370	0.65	-0.1
1,198,864	-		PFLU_RS05370	0.65	+0.1
1,198,956	+		PFLU_RS05370	0.69	+2.0
1,198,957	-		PFLU_RS05370	0.69	-0.7
1,198,957	-		PFLU_RS05370	0.69	-1.6
1,198,957	-		PFLU_RS05370	0.69	+1.0
1,198,957	-		PFLU_RS05370	0.69	-0.7
1,199,241	+		PFLU_RS05370	0.81	-1.5
1,199,241	+		PFLU_RS05370	0.81	+2.4
1,199,242	-		PFLU_RS05370	0.81	+0.8
1,199,379	+		PFLU_RS05370	0.87	-0.8
1,199,544	+				+2.8
1,199,544	+				+2.7
1,199,545	-				-0.8
1,199,598	+				-1.4
1,199,739	+				-1.3
1,199,739	+				+0.4
1,199,739	+				+2.7
1,199,740	-				+1.1
1,199,818	+		PFLU_RS05375	0.15	+3.3
1,199,818	+		PFLU_RS05375	0.15	-1.3
1,199,818	+		PFLU_RS05375	0.15	+0.5
1,199,818	+		PFLU_RS05375	0.15	+2.2
1,199,819	-		PFLU_RS05375	0.15	+1.9
1,199,939	+		PFLU_RS05375	0.29	-0.9
1,199,939	+		PFLU_RS05375	0.29	+2.0
1,199,939	+		PFLU_RS05375	0.29	-1.4
1,199,939	+		PFLU_RS05375	0.29	-1.6
1,199,939	+		PFLU_RS05375	0.29	-1.2
1,199,939	+		PFLU_RS05375	0.29	+0.3
1,199,940	-		PFLU_RS05375	0.29	-2.1
1,200,054	+		PFLU_RS05375	0.42	-1.4
1,200,055	-		PFLU_RS05375	0.42	-1.5
1,200,055	-		PFLU_RS05375	0.42	-1.4
1,200,077	+		PFLU_RS05375	0.45	-0.8
1,200,077	+		PFLU_RS05375	0.45	-0.3
1,200,077	+		PFLU_RS05375	0.45	+0.7
1,200,078	-		PFLU_RS05375	0.45	+1.3
1,200,078	-		PFLU_RS05375	0.45	+3.1
1,200,078	-		PFLU_RS05375	0.45	+2.7
1,200,113	+		PFLU_RS05375	0.49	+0.4
1,200,113	+		PFLU_RS05375	0.49	+1.7
1,200,113	+		PFLU_RS05375	0.49	+3.0
1,200,114	-		PFLU_RS05375	0.49	+0.1
1,200,114	-		PFLU_RS05375	0.49	-1.1
1,200,114	-		PFLU_RS05375	0.49	-2.0
1,200,181	+		PFLU_RS05375	0.57	+0.9
1,200,182	+		PFLU_RS05375	0.57	-0.5
1,200,224	+		PFLU_RS05375	0.62	+1.6
1,200,225	-		PFLU_RS05375	0.62	-1.8
1,200,225	-		PFLU_RS05375	0.62	+1.8
1,200,255	-		PFLU_RS05375	0.65	-1.9
1,200,471	+				+0.7
1,200,471	+				-1.7
1,200,471	+				-1.7
1,200,472	-				-0.9
1,200,472	-				-1.5
1,200,472	-				+0.3
1,200,472	-				+1.7
1,200,472	-				+0.5
1,200,472	-				+0.7
1,200,472	-				-1.7
1,200,479	+				+2.1
1,200,527	+				-2.1
1,200,527	+				+0.2
1,200,527	+				+0.9
1,200,527	+				-2.5
1,200,527	+				+1.1
1,200,527	+				-0.1
1,200,527	+				+0.3
1,200,527	+				+5.9
1,200,527	+				+0.1
1,200,527	+				+3.1
1,200,527	+				+1.3
1,200,527	+				+0.1
1,200,527	+				+2.0
1,200,527	+				+1.7
1,200,528	-				+1.1
1,200,528	-				-0.5
1,200,528	-				+1.4
1,200,528	-				-0.1
1,200,528	-				-0.7
1,200,528	-				+2.1
1,200,528	-				-0.7
1,200,528	-				-1.8
1,200,528	-				+0.3
1,200,528	-				+2.1
1,200,528	-				-2.5
1,200,528	-				+0.1
1,200,528	-				+0.1
1,200,563	+				+0.9
1,200,569	+				+2.9
1,200,569	+				-0.5
1,200,629	-		PFLU_RS05380	0.18	-2.4
1,200,629	-		PFLU_RS05380	0.18	+0.4