Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05010

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
1,118,526	+		PFLU_RS05005	0.14	+0.0
1,118,526	+		PFLU_RS05005	0.14	-0.8
1,118,526	+		PFLU_RS05005	0.14	+0.6
1,118,526	+		PFLU_RS05005	0.14	-1.9
1,118,527	-		PFLU_RS05005	0.15	+0.0
1,118,527	-		PFLU_RS05005	0.15	-1.2
1,118,605	-		PFLU_RS05005	0.21	-1.1
1,118,658	+		PFLU_RS05005	0.26	+1.6
1,118,658	+		PFLU_RS05005	0.26	-2.2
1,118,658	+		PFLU_RS05005	0.26	-1.3
1,118,658	+		PFLU_RS05005	0.26	-1.6
1,118,658	+		PFLU_RS05005	0.26	-1.4
1,118,658	+		PFLU_RS05005	0.26	-1.2
1,118,658	+		PFLU_RS05005	0.26	-0.1
1,118,658	+		PFLU_RS05005	0.26	+1.4
1,118,658	+		PFLU_RS05005	0.26	-1.6
1,118,659	-		PFLU_RS05005	0.26	+0.0
1,118,659	-		PFLU_RS05005	0.26	-1.3
1,118,701	-		PFLU_RS05005	0.30	+1.3
1,118,701	-		PFLU_RS05005	0.30	-1.1
1,118,703	+		PFLU_RS05005	0.30	+1.7
1,118,703	+		PFLU_RS05005	0.30	+0.2
1,118,703	+		PFLU_RS05005	0.30	-0.6
1,118,703	+		PFLU_RS05005	0.30	-2.2
1,118,703	+		PFLU_RS05005	0.30	-2.5
1,118,704	-		PFLU_RS05005	0.30	-2.2
1,118,704	-		PFLU_RS05005	0.30	-0.7
1,118,704	-		PFLU_RS05005	0.30	+0.2
1,119,055	+		PFLU_RS05005	0.61	+0.4
1,119,055	+		PFLU_RS05005	0.61	+0.4
1,119,213	+		PFLU_RS05005	0.74	-2.8
1,119,213	+		PFLU_RS05005	0.74	-1.6
1,119,213	+		PFLU_RS05005	0.74	+1.9
1,119,213	+		PFLU_RS05005	0.74	-0.3
1,119,214	-		PFLU_RS05005	0.75	+1.3
1,119,214	-		PFLU_RS05005	0.75	+2.7
1,119,214	-		PFLU_RS05005	0.75	-1.7
1,119,267	+		PFLU_RS05005	0.79	-2.2
1,119,267	+		PFLU_RS05005	0.79	-1.7
1,119,267	+		PFLU_RS05005	0.79	+2.7
1,119,268	-		PFLU_RS05005	0.79	+2.7
1,119,268	-		PFLU_RS05005	0.79	-1.0
1,119,268	-		PFLU_RS05005	0.79	-1.7
1,119,461	+				+2.4
1,119,461	+				-1.4
1,119,461	+				+1.1
1,119,461	+				+1.7
1,119,461	+				-1.5
1,119,461	+				-1.1
1,119,461	+				-0.6
1,119,461	+				+1.1
1,119,461	+				-1.3
1,119,461	+				+1.4
1,119,461	+				-2.5
1,119,461	+				+2.8
1,119,461	+				-0.1
1,119,461	+				-0.9
1,119,461	+				+0.0
1,119,461	+				-0.9
1,119,461	+				+1.4
1,119,462	-				+1.6
1,119,462	-				-0.7
1,119,462	-				-1.1
1,119,462	-				+1.5
1,119,462	-				-0.1
1,119,462	-				+3.3
1,119,462	-				-0.5
1,119,462	-				+1.1
1,119,462	-				-0.1
1,119,462	-				-0.1
1,119,462	-				+0.1
1,119,462	-				-1.0
1,119,462	-				+1.6
1,119,462	-				+1.5
1,119,462	-				-1.9
1,119,546	+				-2.2
1,119,547	-				-2.1
1,119,547	-				-1.5
1,119,547	-				+2.0
1,119,547	-				+3.8
1,119,549	+				+0.1
1,119,550	-				-0.9
1,119,550	-				+1.9
1,119,550	-				-1.9
1,119,582	+				-0.4
1,119,582	+				-3.0
1,119,583	-				-1.9
1,119,656	+				-1.1
1,119,656	+				+1.5
1,119,656	+				+0.9
1,119,656	+				+2.0
1,119,656	+				+0.9
1,119,656	+				+0.9
1,119,656	+				+1.8
1,119,657	-				+1.1
1,119,895	+		PFLU_RS05010	0.16	+0.1
1,119,897	+		PFLU_RS05010	0.16	-1.3
1,119,897	+		PFLU_RS05010	0.16	+1.8
1,119,897	+		PFLU_RS05010	0.16	-0.7
1,119,898	-		PFLU_RS05010	0.16	+1.9
1,119,898	-		PFLU_RS05010	0.16	-1.1
1,119,898	-		PFLU_RS05010	0.16	-1.0
1,119,905	+		PFLU_RS05010	0.16	-1.2
1,119,906	-		PFLU_RS05010	0.16	+0.4
1,120,059	-		PFLU_RS05010	0.22	-1.5
1,120,083	+		PFLU_RS05010	0.23	+0.7
1,120,083	+		PFLU_RS05010	0.23	+3.1
1,120,083	+		PFLU_RS05010	0.23	+0.5
1,120,083	+		PFLU_RS05010	0.23	-0.3
1,120,083	+		PFLU_RS05010	0.23	-1.5
1,120,083	+		PFLU_RS05010	0.23	-2.6
1,120,083	+		PFLU_RS05010	0.23	+3.1
1,120,083	+		PFLU_RS05010	0.23	-1.8
1,120,084	-		PFLU_RS05010	0.23	+1.7
1,120,084	-		PFLU_RS05010	0.23	-2.2
1,120,084	-		PFLU_RS05010	0.23	-1.7
1,120,084	-		PFLU_RS05010	0.23	+1.7
1,120,084	-		PFLU_RS05010	0.23	-1.7
1,120,084	-		PFLU_RS05010	0.23	-1.1
1,120,113	+		PFLU_RS05010	0.24	+1.5
1,120,113	+		PFLU_RS05010	0.24	+1.3
1,120,113	+		PFLU_RS05010	0.24	+2.4
1,120,114	-		PFLU_RS05010	0.24	+0.1
1,120,114	-		PFLU_RS05010	0.24	+0.8
1,120,114	-		PFLU_RS05010	0.24	+1.1
1,120,114	-		PFLU_RS05010	0.24	+1.1
1,120,114	-		PFLU_RS05010	0.24	+2.0
1,120,114	-		PFLU_RS05010	0.24	-0.9
1,120,114	-		PFLU_RS05010	0.24	+1.1
1,120,134	+		PFLU_RS05010	0.25	-0.1
1,120,134	+		PFLU_RS05010	0.25	+0.7
1,120,135	-		PFLU_RS05010	0.25	+2.3
1,120,135	-		PFLU_RS05010	0.25	-1.5
1,120,135	-		PFLU_RS05010	0.25	-0.7
1,120,209	+		PFLU_RS05010	0.28	+1.1
1,120,315	+		PFLU_RS05010	0.33	-0.5
1,120,315	+		PFLU_RS05010	0.33	+3.8
1,120,315	+		PFLU_RS05010	0.33	-0.7
1,120,315	+		PFLU_RS05010	0.33	+1.1
1,120,316	-		PFLU_RS05010	0.33	+1.3
1,120,316	-		PFLU_RS05010	0.33	+0.4
1,120,329	+		PFLU_RS05010	0.33	+0.7
1,120,330	-		PFLU_RS05010	0.33	+1.1
1,120,330	-		PFLU_RS05010	0.33	-1.2
1,120,580	+		PFLU_RS05010	0.43	-2.3
1,120,620	+		PFLU_RS05010	0.45	-1.5
1,120,620	+		PFLU_RS05010	0.45	-2.1
1,120,621	-		PFLU_RS05010	0.45	-0.5
1,120,621	-		PFLU_RS05010	0.45	+1.4
1,120,621	-		PFLU_RS05010	0.45	+1.7
1,120,658	+		PFLU_RS05010	0.47	+0.5
1,120,658	+		PFLU_RS05010	0.47	-0.1
1,120,658	+		PFLU_RS05010	0.47	+1.4
1,120,658	+		PFLU_RS05010	0.47	+1.6
1,120,658	+		PFLU_RS05010	0.47	+0.7
1,120,658	+		PFLU_RS05010	0.47	-1.5
1,120,658	+		PFLU_RS05010	0.47	+1.7
1,120,658	+		PFLU_RS05010	0.47	+2.4
1,120,658	+		PFLU_RS05010	0.47	-0.6
1,120,658	+		PFLU_RS05010	0.47	+0.7
1,120,658	+		PFLU_RS05010	0.47	+1.7
1,120,658	+		PFLU_RS05010	0.47	-0.6
1,120,658	+		PFLU_RS05010	0.47	-1.0
1,120,658	+		PFLU_RS05010	0.47	-0.9
1,120,658	+		PFLU_RS05010	0.47	-0.9
1,120,658	+		PFLU_RS05010	0.47	-1.9
1,120,658	+		PFLU_RS05010	0.47	+0.3
1,120,658	+		PFLU_RS05010	0.47	-0.1
1,120,659	-		PFLU_RS05010	0.47	-1.0
1,120,659	-		PFLU_RS05010	0.47	-0.9
1,120,659	-		PFLU_RS05010	0.47	+1.2
1,120,659	-		PFLU_RS05010	0.47	+0.9
1,120,659	-		PFLU_RS05010	0.47	+1.2
1,120,659	-		PFLU_RS05010	0.47	+2.1
1,120,659	-		PFLU_RS05010	0.47	-1.2
1,120,659	-		PFLU_RS05010	0.47	-0.8
1,120,659	-		PFLU_RS05010	0.47	+1.4
1,120,659	-		PFLU_RS05010	0.47	-0.7
1,120,659	-		PFLU_RS05010	0.47	-1.8
1,120,659	-		PFLU_RS05010	0.47	+3.1
1,120,659	-		PFLU_RS05010	0.47	+2.1
1,120,659	-		PFLU_RS05010	0.47	+0.4
1,120,659	-		PFLU_RS05010	0.47	+0.1
1,120,659	-		PFLU_RS05010	0.47	+2.2
1,120,659	-		PFLU_RS05010	0.47	-1.3
1,120,659	-		PFLU_RS05010	0.47	+0.7
1,120,659	-		PFLU_RS05010	0.47	+0.3
1,120,659	-		PFLU_RS05010	0.47	-2.0
1,120,659	-		PFLU_RS05010	0.47	-2.9
1,120,659	-		PFLU_RS05010	0.47	+3.5
1,120,670	+		PFLU_RS05010	0.47	-1.7
1,120,670	+		PFLU_RS05010	0.47	-2.7
1,120,670	+		PFLU_RS05010	0.47	-1.4
1,120,670	+		PFLU_RS05010	0.47	+1.4
1,120,671	-		PFLU_RS05010	0.47	+1.8
1,120,671	-		PFLU_RS05010	0.47	+3.1
1,120,671	-		PFLU_RS05010	0.47	+1.5
1,120,671	-		PFLU_RS05010	0.47	+1.1
1,120,671	-		PFLU_RS05010	0.47	+0.4
1,120,671	-		PFLU_RS05010	0.47	+1.1
1,120,671	-		PFLU_RS05010	0.47	-1.5
1,120,671	-		PFLU_RS05010	0.47	-1.7
1,120,776	+		PFLU_RS05010	0.51	-1.8
1,120,776	+		PFLU_RS05010	0.51	+0.1
1,120,776	+		PFLU_RS05010	0.51	-0.7
1,120,776	+		PFLU_RS05010	0.51	+1.7
1,120,777	-		PFLU_RS05010	0.51	+1.2
1,120,777	-		PFLU_RS05010	0.51	+2.1
1,120,777	-		PFLU_RS05010	0.51	-0.5
1,120,777	-		PFLU_RS05010	0.51	+1.7
1,120,777	-		PFLU_RS05010	0.51	+2.7
1,120,777	-		PFLU_RS05010	0.51	+2.5
1,120,911	+		PFLU_RS05010	0.57	-1.7
1,120,979	+		PFLU_RS05010	0.60	+3.9
1,120,979	+		PFLU_RS05010	0.60	+1.4
1,120,979	+		PFLU_RS05010	0.60	-1.3
1,120,979	+		PFLU_RS05010	0.60	+1.1
1,120,980	-		PFLU_RS05010	0.60	+0.7
1,120,980	-		PFLU_RS05010	0.60	+0.7
1,121,115	+		PFLU_RS05010	0.65	-0.6
1,121,116	-		PFLU_RS05010	0.65	-0.6
1,121,116	-		PFLU_RS05010	0.65	+0.4
1,121,174	+		PFLU_RS05010	0.68	-1.4
1,121,174	+		PFLU_RS05010	0.68	+2.8
1,121,174	+		PFLU_RS05010	0.68	+1.9
1,121,174	+		PFLU_RS05010	0.68	-0.4
1,121,174	+		PFLU_RS05010	0.68	+3.5
1,121,175	-		PFLU_RS05010	0.68	-0.5
1,121,175	-		PFLU_RS05010	0.68	-2.4
1,121,217	+		PFLU_RS05010	0.69	-0.8
1,121,217	+		PFLU_RS05010	0.69	+1.4
1,121,217	+		PFLU_RS05010	0.69	-0.6
1,121,217	+		PFLU_RS05010	0.69	+0.7
1,121,218	-		PFLU_RS05010	0.69	-0.1
1,121,218	-		PFLU_RS05010	0.69	-0.1
1,121,218	-		PFLU_RS05010	0.69	-1.2
1,121,218	-		PFLU_RS05010	0.69	+1.0
1,121,218	-		PFLU_RS05010	0.69	+1.5
1,121,324	+		PFLU_RS05010	0.74	-2.2
1,121,324	+		PFLU_RS05010	0.74	-2.0
1,121,324	+		PFLU_RS05010	0.74	+1.4
1,121,325	-		PFLU_RS05010	0.74	-0.3
1,121,325	-		PFLU_RS05010	0.74	+0.9
1,121,409	+		PFLU_RS05010	0.77	-0.5
1,121,409	+		PFLU_RS05010	0.77	+0.7
1,121,418	+		PFLU_RS05010	0.77	+0.9
1,121,418	+		PFLU_RS05010	0.77	+1.3
1,121,418	+		PFLU_RS05010	0.77	+3.4
1,121,418	+		PFLU_RS05010	0.77	-0.7
1,121,418	+		PFLU_RS05010	0.77	-2.3
1,121,418	+		PFLU_RS05010	0.77	+0.4
1,121,419	-		PFLU_RS05010	0.78	-0.3
1,121,419	-		PFLU_RS05010	0.78	+3.0
1,121,419	-		PFLU_RS05010	0.78	-0.3
1,121,419	-		PFLU_RS05010	0.78	+3.8
1,121,419	-		PFLU_RS05010	0.78	+0.0
1,121,419	-		PFLU_RS05010	0.78	+3.0
1,121,436	+		PFLU_RS05010	0.78	-1.1
1,121,436	+		PFLU_RS05010	0.78	+2.7
1,121,436	+		PFLU_RS05010	0.78	-2.1
1,121,436	+		PFLU_RS05010	0.78	-1.7
1,121,436	+		PFLU_RS05010	0.78	+0.6
1,121,437	-		PFLU_RS05010	0.78	+0.4
1,121,437	-		PFLU_RS05010	0.78	+1.0
1,121,437	-		PFLU_RS05010	0.78	+1.2
1,121,469	+		PFLU_RS05010	0.80	-1.3
1,121,470	-		PFLU_RS05010	0.80	-1.5
1,121,514	-		PFLU_RS05010	0.81	-0.9
1,121,514	-		PFLU_RS05010	0.81	-1.7
1,121,723	+		PFLU_RS05010	0.90	+0.3
1,121,723	+		PFLU_RS05010	0.90	+2.9
1,121,723	+		PFLU_RS05010	0.90	-0.8
1,121,723	+		PFLU_RS05010	0.90	+0.1
1,121,723	+		PFLU_RS05010	0.90	-2.5
1,121,723	+		PFLU_RS05010	0.90	+3.9
1,121,723	+		PFLU_RS05010	0.90	+0.4
1,121,723	+		PFLU_RS05010	0.90	-2.7
1,121,724	-		PFLU_RS05010	0.90	+2.1
1,121,724	-		PFLU_RS05010	0.90	+0.1
1,121,724	-		PFLU_RS05010	0.90	+2.8
1,121,724	-		PFLU_RS05010	0.90	-1.4
1,121,724	-		PFLU_RS05010	0.90	+1.5
1,121,724	-		PFLU_RS05010	0.90	+0.3
1,121,724	-		PFLU_RS05010	0.90	-0.1
1,121,794	+				+0.8
1,121,794	+				-1.3
1,121,794	+				+1.4
1,121,827	+				+0.4
1,121,827	+				+1.9
1,121,827	+				-0.1
1,121,827	+				+2.0
1,121,827	+				-1.2
1,121,828	-				+0.2
1,121,828	-				+1.4
1,121,828	-				-0.8
1,122,021	-				-0.6
1,122,021	-				+1.1
1,122,021	-				-2.4
1,122,021	-				+0.2
1,122,021	-				-1.8
1,122,066	+				+0.4
1,122,066	+				-1.9
1,122,067	-				+1.3
1,122,087	+				-0.9
1,122,088	-				-1.9
1,122,110	+		PFLU_RS05015	0.10	-0.2
1,122,111	-		PFLU_RS05015	0.10	-1.6
1,122,168	+		PFLU_RS05015	0.18	+0.7
1,122,168	+		PFLU_RS05015	0.18	+2.0
1,122,168	+		PFLU_RS05015	0.18	-1.5
1,122,168	+		PFLU_RS05015	0.18	+0.6
1,122,168	+		PFLU_RS05015	0.18	-1.6
1,122,168	+		PFLU_RS05015	0.18	-2.6
1,122,168	+		PFLU_RS05015	0.18	+1.5
1,122,168	+		PFLU_RS05015	0.18	-2.8
1,122,168	+		PFLU_RS05015	0.18	-0.4
1,122,168	+		PFLU_RS05015	0.18	-0.8
1,122,168	+		PFLU_RS05015	0.18	+1.3
1,122,168	+		PFLU_RS05015	0.18	+0.9
1,122,168	+		PFLU_RS05015	0.18	+2.0
1,122,168	+		PFLU_RS05015	0.18	-0.3
1,122,168	+		PFLU_RS05015	0.18	+1.1
1,122,169	-		PFLU_RS05015	0.18	+1.1
1,122,169	-		PFLU_RS05015	0.18	+1.0
1,122,169	-		PFLU_RS05015	0.18	+0.3
1,122,169	-		PFLU_RS05015	0.18	+2.4
1,122,169	-		PFLU_RS05015	0.18	+2.7
1,122,169	-		PFLU_RS05015	0.18	-1.6
1,122,169	-		PFLU_RS05015	0.18	-1.3
1,122,169	-		PFLU_RS05015	0.18	+1.0
1,122,169	-		PFLU_RS05015	0.18	+0.4
1,122,237	+		PFLU_RS05015	0.28	+1.9
1,122,237	+		PFLU_RS05015	0.28	-1.1
1,122,237	+		PFLU_RS05015	0.28	+2.1
1,122,237	+		PFLU_RS05015	0.28	-1.2
1,122,237	+		PFLU_RS05015	0.28	-1.1
1,122,237	+		PFLU_RS05015	0.28	-0.2
1,122,237	+		PFLU_RS05015	0.28	+4.0
1,122,238	-		PFLU_RS05015	0.28	-0.1
1,122,238	-		PFLU_RS05015	0.28	-1.8
1,122,238	-		PFLU_RS05015	0.28	+1.6
1,122,238	-		PFLU_RS05015	0.28	-0.9
1,122,238	-		PFLU_RS05015	0.28	+0.8
1,122,238	-		PFLU_RS05015	0.28	+2.7
1,122,238	-		PFLU_RS05015	0.28	+2.7
1,122,238	-		PFLU_RS05015	0.28	-1.9
1,122,368	+		PFLU_RS05015	0.46	-0.9
1,122,368	+		PFLU_RS05015	0.46	-2.2
1,122,368	+		PFLU_RS05015	0.46	-1.6
1,122,368	+		PFLU_RS05015	0.46	+1.5
1,122,369	-		PFLU_RS05015	0.46	+0.5
1,122,369	-		PFLU_RS05015	0.46	-0.7
1,122,369	-		PFLU_RS05015	0.46	+0.7
1,122,369	-		PFLU_RS05015	0.46	-1.7
1,122,369	-		PFLU_RS05015	0.46	+1.0
1,122,369	-		PFLU_RS05015	0.46	-1.4
1,122,369	-		PFLU_RS05015	0.46	-1.1
1,122,369	-		PFLU_RS05015	0.46	-0.1
1,122,369	-		PFLU_RS05015	0.46	-0.1
1,122,369	-		PFLU_RS05015	0.46	-0.1
1,122,398	-		PFLU_RS05015	0.50	-0.9
1,122,398	-		PFLU_RS05015	0.50	-0.1
1,122,398	-		PFLU_RS05015	0.50	-1.4
1,122,410	+		PFLU_RS05015	0.52	-0.5
1,122,410	+		PFLU_RS05015	0.52	+2.3
1,122,410	+		PFLU_RS05015	0.52	+0.6
1,122,410	+		PFLU_RS05015	0.52	-2.6
1,122,410	+		PFLU_RS05015	0.52	-1.3
1,122,411	-		PFLU_RS05015	0.52	-2.8
1,122,411	-		PFLU_RS05015	0.52	-0.3
1,122,411	-		PFLU_RS05015	0.52	-0.8
1,122,411	-		PFLU_RS05015	0.52	+0.5
1,122,411	-		PFLU_RS05015	0.52	+1.4
1,122,473	-		PFLU_RS05015	0.60	+4.3
1,122,473	-		PFLU_RS05015	0.60	-1.3
1,122,728	+				+1.4
1,122,729	-				-0.9
1,122,742	+				-1.3
1,122,777	+				-0.5
1,122,784	+				-2.3
1,122,785	-				+1.7
1,122,785	-				-1.0
1,122,785	-				+2.1
1,122,785	-				-1.7
1,122,785	-				-0.6
1,122,794	+				+0.3
1,122,794	+				-1.3
1,122,794	+				-2.9
1,122,794	+				-2.7
1,122,795	-				-0.8
1,122,800	+				-0.8
1,122,966	-		PFLU_RS05020	0.28	-1.9