Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04965

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
1,110,742	+		PFLU_RS04960	0.30	-0.3
1,110,806	+		PFLU_RS04960	0.36	+4.0
1,110,806	+		PFLU_RS04960	0.36	+0.5
1,110,806	+		PFLU_RS04960	0.36	-1.7
1,110,806	+		PFLU_RS04960	0.36	-1.8
1,110,806	+		PFLU_RS04960	0.36	-1.4
1,110,806	+		PFLU_RS04960	0.36	+4.1
1,110,806	+		PFLU_RS04960	0.36	-2.1
1,110,806	+		PFLU_RS04960	0.36	-0.5
1,110,806	+		PFLU_RS04960	0.36	-1.3
1,110,807	-		PFLU_RS04960	0.36	+2.3
1,110,807	-		PFLU_RS04960	0.36	+1.3
1,110,807	-		PFLU_RS04960	0.36	+0.1
1,110,807	-		PFLU_RS04960	0.36	+0.1
1,110,807	-		PFLU_RS04960	0.36	+1.6
1,110,807	-		PFLU_RS04960	0.36	-1.9
1,110,807	-		PFLU_RS04960	0.36	-0.8
1,110,807	-		PFLU_RS04960	0.36	+1.3
1,110,809	+		PFLU_RS04960	0.37	-0.1
1,110,809	+		PFLU_RS04960	0.37	-0.8
1,110,809	+		PFLU_RS04960	0.37	-1.1
1,110,809	+		PFLU_RS04960	0.37	+1.1
1,110,809	+		PFLU_RS04960	0.37	+2.8
1,110,809	+		PFLU_RS04960	0.37	-0.3
1,110,809	+		PFLU_RS04960	0.37	+1.9
1,110,809	+		PFLU_RS04960	0.37	+0.7
1,110,810	-		PFLU_RS04960	0.37	-0.8
1,110,810	-		PFLU_RS04960	0.37	-1.5
1,110,810	-		PFLU_RS04960	0.37	-1.6
1,110,810	-		PFLU_RS04960	0.37	-0.2
1,110,810	-		PFLU_RS04960	0.37	+3.3
1,110,810	-		PFLU_RS04960	0.37	+0.2
1,110,810	-		PFLU_RS04960	0.37	+0.0
1,110,810	-		PFLU_RS04960	0.37	+1.2
1,110,831	+		PFLU_RS04960	0.39	-1.6
1,110,832	-		PFLU_RS04960	0.39	-1.0
1,110,832	-		PFLU_RS04960	0.39	-0.3
1,110,899	-		PFLU_RS04960	0.45	+2.9
1,110,899	-		PFLU_RS04960	0.45	-1.1
1,110,950	+		PFLU_RS04960	0.50	-0.6
1,110,950	+		PFLU_RS04960	0.50	-2.5
1,110,950	+		PFLU_RS04960	0.50	+3.4
1,110,950	+		PFLU_RS04960	0.50	+0.9
1,110,951	-		PFLU_RS04960	0.50	+3.7
1,110,951	-		PFLU_RS04960	0.50	+4.6
1,110,951	-		PFLU_RS04960	0.50	+4.4
1,111,017	+		PFLU_RS04960	0.57	+0.5
1,111,017	+		PFLU_RS04960	0.57	+0.4
1,111,017	+		PFLU_RS04960	0.57	+0.2
1,111,017	+		PFLU_RS04960	0.57	-0.5
1,111,017	+		PFLU_RS04960	0.57	+1.6
1,111,017	+		PFLU_RS04960	0.57	+0.5
1,111,017	+		PFLU_RS04960	0.57	+0.1
1,111,017	+		PFLU_RS04960	0.57	+3.4
1,111,018	-		PFLU_RS04960	0.57	+0.2
1,111,018	-		PFLU_RS04960	0.57	-0.8
1,111,018	-		PFLU_RS04960	0.57	+3.4
1,111,079	+		PFLU_RS04960	0.63	+0.2
1,111,079	+		PFLU_RS04960	0.63	-0.6
1,111,079	+		PFLU_RS04960	0.63	+0.5
1,111,079	+		PFLU_RS04960	0.63	+2.2
1,111,079	+		PFLU_RS04960	0.63	+3.4
1,111,079	+		PFLU_RS04960	0.63	+3.4
1,111,080	-		PFLU_RS04960	0.63	-1.6
1,111,080	-		PFLU_RS04960	0.63	+2.4
1,111,080	-		PFLU_RS04960	0.63	+1.7
1,111,176	-		PFLU_RS04960	0.72	+0.1
1,111,176	-		PFLU_RS04960	0.72	+3.1
1,111,286	+		PFLU_RS04960	0.83	-0.9
1,111,286	+		PFLU_RS04960	0.83	-0.8
1,111,323	+		PFLU_RS04960	0.86	+0.5
1,111,323	+		PFLU_RS04960	0.86	-1.9
1,111,324	-		PFLU_RS04960	0.87	-1.9
1,111,324	-		PFLU_RS04960	0.87	-1.1
1,111,324	-		PFLU_RS04960	0.87	+0.7
1,111,324	-		PFLU_RS04960	0.87	+1.6
1,111,345	+		PFLU_RS04960	0.89	+2.6
1,111,349	+		PFLU_RS04960	0.89	+2.5
1,111,349	+		PFLU_RS04960	0.89	+3.1
1,111,349	+		PFLU_RS04960	0.89	+2.8
1,111,349	+		PFLU_RS04960	0.89	-1.5
1,111,349	+		PFLU_RS04960	0.89	-1.8
1,111,349	+		PFLU_RS04960	0.89	-0.1
1,111,349	+		PFLU_RS04960	0.89	-0.6
1,111,349	+		PFLU_RS04960	0.89	-1.1
1,111,350	-		PFLU_RS04960	0.89	-0.9
1,111,350	-		PFLU_RS04960	0.89	+0.1
1,111,350	-		PFLU_RS04960	0.89	+4.0
1,111,350	-		PFLU_RS04960	0.89	-0.1
1,111,350	-		PFLU_RS04960	0.89	+0.4
1,111,350	-		PFLU_RS04960	0.89	+1.8
1,111,350	-		PFLU_RS04960	0.89	+1.5
1,111,350	-		PFLU_RS04960	0.89	+0.0
1,111,350	-		PFLU_RS04960	0.89	+1.7
1,111,350	-		PFLU_RS04960	0.89	-1.8
1,111,443	-				+1.2
1,111,646	+				+2.4
1,111,646	+				-0.9
1,111,646	+				+0.1
1,111,647	-				+1.4
1,111,647	-				+0.1
1,111,647	-				+3.0
1,111,647	-				+0.7
1,111,647	-				+0.7
1,111,647	-				+1.2
1,111,657	+		PFLU_RS04965	0.10	-1.4
1,111,657	+		PFLU_RS04965	0.10	+1.7
1,111,657	+		PFLU_RS04965	0.10	-1.5
1,111,657	+		PFLU_RS04965	0.10	-1.5
1,111,658	-		PFLU_RS04965	0.10	-1.0
1,111,658	-		PFLU_RS04965	0.10	+0.7
1,111,690	+		PFLU_RS04965	0.13	+1.9
1,111,690	+		PFLU_RS04965	0.13	-1.0
1,111,690	+		PFLU_RS04965	0.13	-0.1
1,111,690	+		PFLU_RS04965	0.13	+0.2
1,111,690	+		PFLU_RS04965	0.13	+0.2
1,111,691	-		PFLU_RS04965	0.13	+0.2
1,111,754	+		PFLU_RS04965	0.19	-0.1
1,111,754	+		PFLU_RS04965	0.19	-1.1
1,111,754	+		PFLU_RS04965	0.19	+0.4
1,111,754	+		PFLU_RS04965	0.19	+1.9
1,111,754	+		PFLU_RS04965	0.19	+2.1
1,111,755	-		PFLU_RS04965	0.19	+1.3
1,111,755	-		PFLU_RS04965	0.19	+2.7
1,111,772	+		PFLU_RS04965	0.20	+2.8
1,111,772	+		PFLU_RS04965	0.20	+1.6
1,111,772	+		PFLU_RS04965	0.20	+3.0
1,111,772	+		PFLU_RS04965	0.20	-2.5
1,111,772	+		PFLU_RS04965	0.20	+0.3
1,111,772	+		PFLU_RS04965	0.20	+2.8
1,111,772	+		PFLU_RS04965	0.20	-2.6
1,111,772	+		PFLU_RS04965	0.20	-1.1
1,111,772	+		PFLU_RS04965	0.20	-0.6
1,111,773	-		PFLU_RS04965	0.20	+2.2
1,111,773	-		PFLU_RS04965	0.20	-2.2
1,111,773	-		PFLU_RS04965	0.20	+2.6
1,111,773	-		PFLU_RS04965	0.20	-1.0
1,111,913	+		PFLU_RS04965	0.32	-2.5
1,111,913	+		PFLU_RS04965	0.32	+2.7
1,111,913	+		PFLU_RS04965	0.32	+2.9
1,111,913	+		PFLU_RS04965	0.32	+3.3
1,111,913	+		PFLU_RS04965	0.32	+1.0
1,111,913	+		PFLU_RS04965	0.32	-0.9
1,111,913	+		PFLU_RS04965	0.32	+2.2
1,111,913	+		PFLU_RS04965	0.32	+1.1
1,111,913	+		PFLU_RS04965	0.32	-1.4
1,111,913	+		PFLU_RS04965	0.32	+2.1
1,111,913	+		PFLU_RS04965	0.32	-0.2
1,111,913	+		PFLU_RS04965	0.32	-0.7
1,111,913	+		PFLU_RS04965	0.32	+0.1
1,111,913	+		PFLU_RS04965	0.32	-0.6
1,111,913	+		PFLU_RS04965	0.32	-2.0
1,111,913	+		PFLU_RS04965	0.32	-0.7
1,111,913	+		PFLU_RS04965	0.32	+2.5
1,111,913	+		PFLU_RS04965	0.32	-0.3
1,111,913	+		PFLU_RS04965	0.32	-3.3
1,111,914	-		PFLU_RS04965	0.32	+2.7
1,111,914	-		PFLU_RS04965	0.32	+0.2
1,111,914	-		PFLU_RS04965	0.32	+0.1
1,111,914	-		PFLU_RS04965	0.32	-0.7
1,111,914	-		PFLU_RS04965	0.32	+2.6
1,111,914	-		PFLU_RS04965	0.32	+2.6
1,111,914	-		PFLU_RS04965	0.32	+3.0
1,111,914	-		PFLU_RS04965	0.32	+3.1
1,111,914	-		PFLU_RS04965	0.32	-2.2
1,111,914	-		PFLU_RS04965	0.32	+4.3
1,111,914	-		PFLU_RS04965	0.32	+2.7
1,111,914	-		PFLU_RS04965	0.32	-0.3
1,111,914	-		PFLU_RS04965	0.32	-2.1
1,111,914	-		PFLU_RS04965	0.32	+2.0
1,111,914	-		PFLU_RS04965	0.32	+3.1
1,111,914	-		PFLU_RS04965	0.32	-0.1
1,111,914	-		PFLU_RS04965	0.32	+1.9
1,111,914	-		PFLU_RS04965	0.32	+1.8
1,111,964	+		PFLU_RS04965	0.36	+1.7
1,111,964	+		PFLU_RS04965	0.36	-0.1
1,111,964	+		PFLU_RS04965	0.36	-0.2
1,111,964	+		PFLU_RS04965	0.36	+2.5
1,111,964	+		PFLU_RS04965	0.36	+0.1
1,111,965	-		PFLU_RS04965	0.36	-1.7
1,111,965	-		PFLU_RS04965	0.36	-1.3
1,112,020	+		PFLU_RS04965	0.41	+2.5
1,112,020	+		PFLU_RS04965	0.41	+1.7
1,112,169	+		PFLU_RS04965	0.54	+1.1
1,112,301	+		PFLU_RS04965	0.65	+0.3
1,112,301	+		PFLU_RS04965	0.65	-1.5
1,112,301	+		PFLU_RS04965	0.65	+0.4
1,112,301	+		PFLU_RS04965	0.65	-0.1
1,112,301	+		PFLU_RS04965	0.65	+4.0
1,112,301	+		PFLU_RS04965	0.65	-0.5
1,112,301	+		PFLU_RS04965	0.65	-2.0
1,112,302	-		PFLU_RS04965	0.65	+0.5
1,112,302	-		PFLU_RS04965	0.65	+0.6
1,112,302	-		PFLU_RS04965	0.65	-0.1
1,112,302	-		PFLU_RS04965	0.65	-0.6
1,112,305	+		PFLU_RS04965	0.65	-0.9
1,112,305	+		PFLU_RS04965	0.65	+0.3
1,112,345	+		PFLU_RS04965	0.69	-1.2
1,112,346	-		PFLU_RS04965	0.69	-1.4
1,112,360	-		PFLU_RS04965	0.70	-1.3
1,112,360	-		PFLU_RS04965	0.70	+1.1
1,112,511	-		PFLU_RS04965	0.83	+2.2
1,112,511	-		PFLU_RS04965	0.83	+2.8
1,112,642	+				+1.0
1,112,642	+				-0.2
1,112,684	+				-0.3
1,112,684	+				-1.0
1,112,684	+				-0.6
1,112,684	+				-1.2
1,112,684	+				-0.7
1,112,684	+				+2.6
1,112,685	-				-1.9
1,112,685	-				+0.4
1,112,685	-				-0.7
1,112,685	-				+2.5
1,112,685	-				-1.4
1,112,732	+				+0.4
1,112,732	+				+0.5
1,112,732	+				+0.8
1,112,732	+				-3.0
1,112,732	+				-2.3
1,112,732	+				+3.0
1,112,732	+				+0.7
1,112,732	+				-1.8
1,112,732	+				+0.5
1,112,732	+				-0.7
1,112,732	+				-1.1
1,112,732	+				-0.6
1,112,733	-				-1.2
1,112,733	-				+3.1
1,112,733	-				+1.3
1,112,738	+				-0.1
1,112,738	+				-0.3
1,112,738	+				+1.1
1,112,738	+				-2.2
1,112,738	+				+1.8
1,112,738	+				-0.3
1,112,738	+				-2.2
1,112,739	-				+2.8
1,112,739	-				+0.8
1,112,739	-				+0.6
1,112,739	-				+1.0
1,112,739	-				-0.6
1,112,753	+				+1.3
1,112,753	+				-0.1
1,112,753	+				-0.7
1,112,753	+				+0.4
1,112,754	-				+1.9
1,112,754	-				+2.9
1,112,839	+		PFLU_RS04970	0.10	+3.2
1,112,839	+		PFLU_RS04970	0.10	+0.2
1,112,839	+		PFLU_RS04970	0.10	-0.3
1,112,839	+		PFLU_RS04970	0.10	-0.1
1,112,840	-		PFLU_RS04970	0.10	-0.2
1,112,840	-		PFLU_RS04970	0.10	-0.6
1,112,850	+		PFLU_RS04970	0.11	-0.2
1,112,851	-		PFLU_RS04970	0.11	-1.7
1,112,851	-		PFLU_RS04970	0.11	-0.3
1,112,851	-		PFLU_RS04970	0.11	+1.4
1,112,859	+		PFLU_RS04970	0.12	+1.0
1,112,859	+		PFLU_RS04970	0.12	+0.0
1,112,859	+		PFLU_RS04970	0.12	-1.5
1,112,859	+		PFLU_RS04970	0.12	+0.3
1,112,859	+		PFLU_RS04970	0.12	+1.1
1,112,859	+		PFLU_RS04970	0.12	-1.2
1,112,860	-		PFLU_RS04970	0.12	-1.3
1,112,860	-		PFLU_RS04970	0.12	+3.5
1,112,860	-		PFLU_RS04970	0.12	+0.8
1,112,860	-		PFLU_RS04970	0.12	-0.1
1,112,860	-		PFLU_RS04970	0.12	+0.9
1,112,860	-		PFLU_RS04970	0.12	+1.2
1,112,988	+		PFLU_RS04970	0.24	+0.5
1,112,988	+		PFLU_RS04970	0.24	+2.3
1,112,988	+		PFLU_RS04970	0.24	-1.7
1,112,989	-		PFLU_RS04970	0.24	-1.7
1,112,989	-		PFLU_RS04970	0.24	+0.4
1,112,989	-		PFLU_RS04970	0.24	-1.9
1,112,989	-		PFLU_RS04970	0.24	-0.3
1,112,989	-		PFLU_RS04970	0.24	-0.6
1,112,989	-		PFLU_RS04970	0.24	+1.9
1,112,989	-		PFLU_RS04970	0.24	-0.7
1,112,989	-		PFLU_RS04970	0.24	-1.0
1,112,989	-		PFLU_RS04970	0.24	+0.5
1,112,989	-		PFLU_RS04970	0.24	+2.4
1,112,989	-		PFLU_RS04970	0.24	+0.4
1,112,989	-		PFLU_RS04970	0.24	+2.5
1,112,989	-		PFLU_RS04970	0.24	-1.6
1,112,989	-		PFLU_RS04970	0.24	-1.1
1,112,994	+		PFLU_RS04970	0.24	+0.1
1,112,994	+		PFLU_RS04970	0.24	+2.7
1,112,994	+		PFLU_RS04970	0.24	+1.8
1,112,994	+		PFLU_RS04970	0.24	+2.9
1,112,994	+		PFLU_RS04970	0.24	-2.3
1,112,995	-		PFLU_RS04970	0.24	-1.7
1,112,997	+		PFLU_RS04970	0.25	-1.5
1,113,023	-		PFLU_RS04970	0.27	-1.8
1,113,096	+		PFLU_RS04970	0.34	-1.7
1,113,096	+		PFLU_RS04970	0.34	-1.1
1,113,097	-		PFLU_RS04970	0.34	-1.6
1,113,097	-		PFLU_RS04970	0.34	-0.7
1,113,257	+		PFLU_RS04970	0.48	+1.2
1,113,257	+		PFLU_RS04970	0.48	+3.6
1,113,257	+		PFLU_RS04970	0.48	-1.3
1,113,257	+		PFLU_RS04970	0.48	+0.7
1,113,257	+		PFLU_RS04970	0.48	-0.7
1,113,258	-		PFLU_RS04970	0.48	-1.5
1,113,258	-		PFLU_RS04970	0.48	-1.1
1,113,258	-		PFLU_RS04970	0.48	-1.5
1,113,258	-		PFLU_RS04970	0.48	-2.1
1,113,284	+		PFLU_RS04970	0.51	-1.7
1,113,285	-		PFLU_RS04970	0.51	+2.7
1,113,456	+		PFLU_RS04970	0.66	+2.7
1,113,456	+		PFLU_RS04970	0.66	+0.1
1,113,456	+		PFLU_RS04970	0.66	+0.9
1,113,472	+		PFLU_RS04970	0.68	-0.6
1,113,507	+		PFLU_RS04970	0.71	-2.9
1,113,508	-		PFLU_RS04970	0.71	+1.7
1,113,612	-		PFLU_RS04970	0.81	+0.4