Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04955

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
1,108,532	+		PFLU_RS04950	0.45	+1.0
1,108,532	+		PFLU_RS04950	0.45	-0.6
1,108,732	+		PFLU_RS04950	0.59	+1.7
1,108,732	+		PFLU_RS04950	0.59	-1.0
1,108,733	-		PFLU_RS04950	0.59	-1.0
1,108,733	-		PFLU_RS04950	0.59	+0.0
1,108,733	-		PFLU_RS04950	0.59	+1.5
1,108,733	-		PFLU_RS04950	0.59	+0.7
1,108,733	-		PFLU_RS04950	0.59	-1.2
1,108,733	-		PFLU_RS04950	0.59	-0.5
1,108,819	+		PFLU_RS04950	0.65	+1.9
1,108,819	+		PFLU_RS04950	0.65	-0.9
1,108,819	+		PFLU_RS04950	0.65	-2.1
1,108,819	+		PFLU_RS04950	0.65	-1.1
1,108,819	+		PFLU_RS04950	0.65	+1.8
1,108,819	+		PFLU_RS04950	0.65	-1.4
1,108,819	+		PFLU_RS04950	0.65	-0.0
1,108,819	+		PFLU_RS04950	0.65	+1.0
1,108,819	+		PFLU_RS04950	0.65	+1.8
1,108,819	+		PFLU_RS04950	0.65	+1.1
1,108,819	+		PFLU_RS04950	0.65	+1.8
1,108,819	+		PFLU_RS04950	0.65	+1.5
1,108,819	+		PFLU_RS04950	0.65	-1.5
1,108,819	+		PFLU_RS04950	0.65	-1.8
1,108,819	+		PFLU_RS04950	0.65	-0.5
1,108,819	+		PFLU_RS04950	0.65	+1.4
1,108,820	-		PFLU_RS04950	0.65	-1.3
1,108,820	-		PFLU_RS04950	0.65	-1.9
1,108,820	-		PFLU_RS04950	0.65	-1.0
1,108,820	-		PFLU_RS04950	0.65	+3.3
1,108,820	-		PFLU_RS04950	0.65	+1.1
1,108,820	-		PFLU_RS04950	0.65	-0.1
1,108,820	-		PFLU_RS04950	0.65	+1.9
1,108,820	-		PFLU_RS04950	0.65	+1.5
1,108,820	-		PFLU_RS04950	0.65	-0.6
1,108,820	-		PFLU_RS04950	0.65	+0.4
1,108,820	-		PFLU_RS04950	0.65	-0.8
1,108,820	-		PFLU_RS04950	0.65	-1.6
1,108,820	-		PFLU_RS04950	0.65	+1.4
1,108,820	-		PFLU_RS04950	0.65	+2.1
1,108,820	-		PFLU_RS04950	0.65	-0.8
1,108,820	-		PFLU_RS04950	0.65	+2.7
1,108,892	+		PFLU_RS04950	0.70	+3.0
1,109,312	+				-0.9
1,109,312	+				+0.2
1,109,312	+				+0.7
1,109,312	+				+0.3
1,109,312	+				+0.1
1,109,312	+				+0.7
1,109,312	+				+3.0
1,109,312	+				-1.0
1,109,312	+				+0.1
1,109,313	-				+1.1
1,109,313	-				+2.3
1,109,313	-				-0.5
1,109,313	-				+0.2
1,109,313	-				-0.1
1,109,313	-				-1.3
1,109,339	+				-1.5
1,109,340	-				+1.8
1,109,340	-				+0.1
1,109,340	-				-0.6
1,109,340	-				-0.8
1,109,356	+				-1.2
1,109,356	+				-1.8
1,109,356	+				-1.7
1,109,356	+				-0.3
1,109,357	-				+2.1
1,109,370	+				-1.7
1,109,370	+				-0.5
1,109,370	+				-0.9
1,109,370	+				+1.0
1,109,370	+				-1.0
1,109,370	+				+0.0
1,109,370	+				+0.0
1,109,370	+				+0.7
1,109,371	-				+1.7
1,109,371	-				-1.1
1,109,371	-				-1.3
1,109,371	-				+1.2
1,109,371	-				+1.7
1,109,371	-				-2.0
1,109,371	-				-1.2
1,109,371	-				-2.1
1,109,371	-				+2.7
1,109,371	-				+0.1
1,109,394	-				+0.1
1,109,407	+				+1.1
1,109,407	+				+0.2
1,109,408	-				-1.8
1,109,408	-				+2.3
1,109,413	+				+3.8
1,109,413	+				+0.7
1,109,413	+				-1.7
1,109,413	+				-2.6
1,109,414	-				+0.1
1,109,414	-				+3.6
1,109,417	+				-2.2
1,109,417	+				-0.4
1,109,417	+				+0.5
1,109,418	-				-0.3
1,109,418	-				+1.5
1,109,418	-				-1.1
1,109,418	-				+1.3
1,109,469	+				-0.8
1,109,469	+				-1.3
1,109,469	+				+1.2
1,109,469	+				-1.2
1,109,469	+				-0.9
1,109,469	+				+0.7
1,109,470	-				-1.3
1,109,470	-				+2.0
1,109,482	-				-1.0
1,109,504	-		PFLU_RS04955	0.11	+0.1
1,109,548	+		PFLU_RS04955	0.18	+5.2
1,109,548	+		PFLU_RS04955	0.18	-0.5
1,109,548	+		PFLU_RS04955	0.18	+1.7
1,109,548	+		PFLU_RS04955	0.18	+2.3
1,109,548	+		PFLU_RS04955	0.18	+1.1
1,109,548	+		PFLU_RS04955	0.18	+4.1
1,109,548	+		PFLU_RS04955	0.18	-0.5
1,109,548	+		PFLU_RS04955	0.18	+0.8
1,109,548	+		PFLU_RS04955	0.18	-2.0
1,109,549	-		PFLU_RS04955	0.18	+1.3
1,109,549	-		PFLU_RS04955	0.18	-0.3
1,109,549	-		PFLU_RS04955	0.18	-0.6
1,109,549	-		PFLU_RS04955	0.18	-1.9
1,109,574	+		PFLU_RS04955	0.22	-0.8
1,109,574	+		PFLU_RS04955	0.22	-0.2
1,109,575	-		PFLU_RS04955	0.22	-2.8
1,109,575	-		PFLU_RS04955	0.22	-2.4
1,109,588	-		PFLU_RS04955	0.24	-2.1
1,109,634	+		PFLU_RS04955	0.31	-1.7
1,109,634	+		PFLU_RS04955	0.31	+0.0
1,109,635	-		PFLU_RS04955	0.31	+1.2
1,109,635	-		PFLU_RS04955	0.31	-3.0
1,109,635	-		PFLU_RS04955	0.31	+1.2
1,109,635	-		PFLU_RS04955	0.31	-2.5
1,109,635	-		PFLU_RS04955	0.31	+2.3
1,109,635	-		PFLU_RS04955	0.31	+0.1
1,109,665	+		PFLU_RS04955	0.36	+4.2
1,109,665	+		PFLU_RS04955	0.36	+1.6
1,109,666	-		PFLU_RS04955	0.36	+0.5
1,109,666	-		PFLU_RS04955	0.36	-1.8
1,109,666	-		PFLU_RS04955	0.36	-0.8
1,109,708	+		PFLU_RS04955	0.42	+0.3
1,109,708	+		PFLU_RS04955	0.42	-2.5
1,109,708	+		PFLU_RS04955	0.42	+1.0
1,109,708	+		PFLU_RS04955	0.42	-1.3
1,109,727	+		PFLU_RS04955	0.45	+1.9
1,109,727	+		PFLU_RS04955	0.45	+0.6
1,109,727	+		PFLU_RS04955	0.45	+0.9
1,109,727	+		PFLU_RS04955	0.45	+0.1
1,109,728	-		PFLU_RS04955	0.45	-2.4
1,109,778	+		PFLU_RS04955	0.53	-2.2
1,109,778	+		PFLU_RS04955	0.53	-1.1
1,109,778	+		PFLU_RS04955	0.53	-0.5
1,109,884	+		PFLU_RS04955	0.69	-2.5
1,110,005	-		PFLU_RS04955	0.88	+0.4
1,110,036	+				-2.2
1,110,036	+				-0.8
1,110,036	+				-0.5
1,110,037	-				+0.4
1,110,037	-				-0.2
1,110,155	+				-2.8
1,110,156	-				-1.1
1,110,237	+				-0.5
1,110,237	+				+0.4
1,110,237	+				-2.6
1,110,237	+				+0.4
1,110,237	+				+0.8
1,110,237	+				-0.6
1,110,237	+				+0.5
1,110,237	+				+1.8
1,110,237	+				-2.0
1,110,237	+				-1.4
1,110,237	+				-1.8
1,110,237	+				-0.6
1,110,237	+				+1.9
1,110,237	+				-2.3
1,110,237	+				-2.0
1,110,237	+				-1.7
1,110,237	+				+0.2
1,110,237	+				-1.0
1,110,237	+				-2.8
1,110,238	-				-0.2
1,110,238	-				-1.4
1,110,238	-				+2.3
1,110,238	-				+2.2
1,110,238	-				+1.5
1,110,238	-				-1.2
1,110,238	-				+1.2
1,110,238	-				+1.9
1,110,238	-				+0.6
1,110,238	-				+1.7
1,110,238	-				-1.5
1,110,238	-				-1.0
1,110,238	-				+6.0
1,110,238	-				+0.2
1,110,260	+				-1.8
1,110,260	+				-1.6
1,110,260	+				-0.5
1,110,260	+				-1.8
1,110,273	+				-1.8
1,110,273	+				-0.0
1,110,279	+				-0.5
1,110,279	+				-2.5
1,110,279	+				-2.4
1,110,279	+				-0.6
1,110,280	-				+0.5
1,110,280	-				+0.4
1,110,280	-				+0.2
1,110,280	-				-0.7
1,110,280	-				-2.0
1,110,280	-				+2.2
1,110,280	-				-0.7
1,110,280	-				+0.4
1,110,304	-				-0.6
1,110,377	+				+0.0
1,110,377	+				-2.2
1,110,377	+				-2.0
1,110,377	+				-0.1
1,110,377	+				-1.7
1,110,377	+				-2.4
1,110,377	+				-1.7
1,110,377	+				-1.5
1,110,377	+				+1.9
1,110,377	+				-1.8
1,110,378	-				-0.9
1,110,378	-				-2.4
1,110,378	-				-0.3
1,110,378	-				-1.4
1,110,378	-				-1.2
1,110,378	-				+2.3
1,110,378	-				+0.1
1,110,378	-				+1.3
1,110,438	+				+1.7
1,110,438	+				+2.0
1,110,439	-				+2.1
1,110,439	-				-0.1
1,110,477	+				-1.2
1,110,477	+				-0.5
1,110,477	+				-1.8
1,110,478	-				-2.2
1,110,478	-				+0.1
1,110,742	+		PFLU_RS04960	0.30	-0.3
1,110,806	+		PFLU_RS04960	0.36	+4.0
1,110,806	+		PFLU_RS04960	0.36	+0.5
1,110,806	+		PFLU_RS04960	0.36	-1.7
1,110,806	+		PFLU_RS04960	0.36	-1.8
1,110,806	+		PFLU_RS04960	0.36	-1.4
1,110,806	+		PFLU_RS04960	0.36	+4.1
1,110,806	+		PFLU_RS04960	0.36	-2.1
1,110,806	+		PFLU_RS04960	0.36	-0.5
1,110,806	+		PFLU_RS04960	0.36	-1.3
1,110,807	-		PFLU_RS04960	0.36	+2.3
1,110,807	-		PFLU_RS04960	0.36	+1.3
1,110,807	-		PFLU_RS04960	0.36	+0.1
1,110,807	-		PFLU_RS04960	0.36	+0.1
1,110,807	-		PFLU_RS04960	0.36	+1.6
1,110,807	-		PFLU_RS04960	0.36	-1.9
1,110,807	-		PFLU_RS04960	0.36	-0.8
1,110,807	-		PFLU_RS04960	0.36	+1.3
1,110,809	+		PFLU_RS04960	0.37	-0.1
1,110,809	+		PFLU_RS04960	0.37	-0.8
1,110,809	+		PFLU_RS04960	0.37	-1.1
1,110,809	+		PFLU_RS04960	0.37	+1.1
1,110,809	+		PFLU_RS04960	0.37	+2.8
1,110,809	+		PFLU_RS04960	0.37	-0.3
1,110,809	+		PFLU_RS04960	0.37	+1.9
1,110,809	+		PFLU_RS04960	0.37	+0.7
1,110,810	-		PFLU_RS04960	0.37	-0.8
1,110,810	-		PFLU_RS04960	0.37	-1.5
1,110,810	-		PFLU_RS04960	0.37	-1.6
1,110,810	-		PFLU_RS04960	0.37	-0.2
1,110,810	-		PFLU_RS04960	0.37	+3.3
1,110,810	-		PFLU_RS04960	0.37	+0.2
1,110,810	-		PFLU_RS04960	0.37	+0.0
1,110,810	-		PFLU_RS04960	0.37	+1.2
1,110,831	+		PFLU_RS04960	0.39	-1.6
1,110,832	-		PFLU_RS04960	0.39	-1.0
1,110,832	-		PFLU_RS04960	0.39	-0.3
1,110,899	-		PFLU_RS04960	0.45	+2.9
1,110,899	-		PFLU_RS04960	0.45	-1.1
1,110,950	+		PFLU_RS04960	0.50	-0.6
1,110,950	+		PFLU_RS04960	0.50	-2.5
1,110,950	+		PFLU_RS04960	0.50	+3.4
1,110,950	+		PFLU_RS04960	0.50	+0.9
1,110,951	-		PFLU_RS04960	0.50	+3.7
1,110,951	-		PFLU_RS04960	0.50	+4.6
1,110,951	-		PFLU_RS04960	0.50	+4.4
1,111,017	+		PFLU_RS04960	0.57	+0.5
1,111,017	+		PFLU_RS04960	0.57	+0.4
1,111,017	+		PFLU_RS04960	0.57	+0.2
1,111,017	+		PFLU_RS04960	0.57	-0.5
1,111,017	+		PFLU_RS04960	0.57	+1.6
1,111,017	+		PFLU_RS04960	0.57	+0.5
1,111,017	+		PFLU_RS04960	0.57	+0.1
1,111,017	+		PFLU_RS04960	0.57	+3.4
1,111,018	-		PFLU_RS04960	0.57	+0.2
1,111,018	-		PFLU_RS04960	0.57	-0.8
1,111,018	-		PFLU_RS04960	0.57	+3.4
1,111,079	+		PFLU_RS04960	0.63	+0.2
1,111,079	+		PFLU_RS04960	0.63	-0.6
1,111,079	+		PFLU_RS04960	0.63	+0.5
1,111,079	+		PFLU_RS04960	0.63	+2.2
1,111,079	+		PFLU_RS04960	0.63	+3.4
1,111,079	+		PFLU_RS04960	0.63	+3.4
1,111,080	-		PFLU_RS04960	0.63	-1.6
1,111,080	-		PFLU_RS04960	0.63	+2.4
1,111,080	-		PFLU_RS04960	0.63	+1.7