Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03880 and PFLU_RS03885 are separated by 316 nucleotides PFLU_RS03885 and PFLU_RS03890 are separated by 9 nucleotides PFLU_RS03890 and PFLU_RS03895 are separated by 5 nucleotides PFLU_RS03895 and PFLU_RS03900 are separated by 94 nucleotides PFLU_RS03900 and PFLU_RS03905 are separated by 132 nucleotides
PFLU_RS03880: PFLU_RS03880 - ATP-dependent chaperone ClpB, at 882,480 to 885,044
_RS03880
PFLU_RS03885: PFLU_RS03885 - tRNA-Asn, at 885,361 to 885,436
_RS03885
PFLU_RS03890: PFLU_RS03890 - tRNA-Pro, at 885,446 to 885,522
_RS03890
PFLU_RS03895: PFLU_RS03895 - tRNA-Lys, at 885,528 to 885,603
_RS03895
PFLU_RS03900: PFLU_RS03900 - tRNA-Pro, at 885,698 to 885,774
_RS03900
PFLU_RS03905: PFLU_RS03905 - NAD(P)/FAD-dependent oxidoreductase, at 885,907 to 887,205
_RS03905
Position (kb) 885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 884.594 kb on + strand, within PFLU_RS03880 at 884.594 kb on + strand, within PFLU_RS03880 at 884.594 kb on + strand, within PFLU_RS03880 at 884.595 kb on - strand, within PFLU_RS03880 at 884.595 kb on - strand, within PFLU_RS03880 at 884.595 kb on - strand, within PFLU_RS03880 at 884.895 kb on + strand at 884.907 kb on + strand at 884.908 kb on - strand at 884.908 kb on - strand at 884.908 kb on - strand at 884.908 kb on - strand at 884.908 kb on - strand at 884.987 kb on + strand at 884.987 kb on + strand at 884.987 kb on + strand at 884.987 kb on + strand at 884.987 kb on + strand at 884.988 kb on - strand at 884.988 kb on - strand at 884.988 kb on - strand at 884.988 kb on - strand at 885.060 kb on + strand at 885.061 kb on - strand at 885.061 kb on - strand at 885.063 kb on + strand at 885.063 kb on + strand at 885.063 kb on + strand at 885.063 kb on + strand at 885.063 kb on + strand at 885.064 kb on - strand at 885.064 kb on - strand at 885.064 kb on - strand at 885.064 kb on - strand at 885.064 kb on - strand at 885.131 kb on + strand at 885.131 kb on + strand at 885.132 kb on - strand at 885.132 kb on - strand at 885.213 kb on - strand at 885.213 kb on - strand at 885.310 kb on + strand at 885.618 kb on + strand at 885.637 kb on + strand at 885.637 kb on + strand at 885.637 kb on + strand at 885.638 kb on - strand at 885.704 kb on - strand at 885.706 kb on - strand, within PFLU_RS03900 at 885.706 kb on - strand, within PFLU_RS03900 at 885.775 kb on + strand at 885.775 kb on + strand at 885.775 kb on + strand at 885.778 kb on + strand at 885.778 kb on + strand at 885.790 kb on + strand at 885.800 kb on + strand at 885.880 kb on + strand at 885.880 kb on + strand at 885.880 kb on + strand at 885.880 kb on + strand at 885.880 kb on + strand at 885.880 kb on + strand at 885.880 kb on + strand at 885.881 kb on - strand at 885.881 kb on - strand at 885.881 kb on - strand at 885.881 kb on - strand at 885.881 kb on - strand at 885.881 kb on - strand at 885.905 kb on + strand at 885.905 kb on + strand at 885.905 kb on + strand at 885.906 kb on - strand at 885.906 kb on - strand at 885.906 kb on - strand at 885.906 kb on - strand at 885.906 kb on - strand at 885.918 kb on + strand at 885.918 kb on + strand at 885.918 kb on + strand at 885.919 kb on - strand at 885.919 kb on - strand at 885.919 kb on - strand at 885.919 kb on - strand at 885.987 kb on - strand at 885.987 kb on - strand at 886.010 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.022 kb on + strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.023 kb on - strand at 886.054 kb on + strand, within PFLU_RS03905 at 886.054 kb on + strand, within PFLU_RS03905 at 886.054 kb on + strand, within PFLU_RS03905 at 886.054 kb on + strand, within PFLU_RS03905 at 886.055 kb on - strand, within PFLU_RS03905 at 886.055 kb on - strand, within PFLU_RS03905 at 886.055 kb on - strand, within PFLU_RS03905 at 886.055 kb on - strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.133 kb on + strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.134 kb on - strand, within PFLU_RS03905 at 886.139 kb on + strand, within PFLU_RS03905 at 886.139 kb on + strand, within PFLU_RS03905 at 886.139 kb on + strand, within PFLU_RS03905 at 886.140 kb on - strand, within PFLU_RS03905 at 886.140 kb on - strand, within PFLU_RS03905 at 886.140 kb on - strand, within PFLU_RS03905 at 886.140 kb on - strand, within PFLU_RS03905 at 886.386 kb on + strand, within PFLU_RS03905 at 886.399 kb on + strand, within PFLU_RS03905 at 886.399 kb on + strand, within PFLU_RS03905 at 886.399 kb on + strand, within PFLU_RS03905 at 886.399 kb on + strand, within PFLU_RS03905 at 886.400 kb on - strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.512 kb on + strand, within PFLU_RS03905 at 886.513 kb on - strand, within PFLU_RS03905 at 886.513 kb on - strand, within PFLU_RS03905 at 886.513 kb on - strand, within PFLU_RS03905 at 886.513 kb on - strand, within PFLU_RS03905 at 886.513 kb on - strand, within PFLU_RS03905 at 886.513 kb on - strand, within PFLU_RS03905 at 886.553 kb on - strand, within PFLU_RS03905
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 884,594 + PFLU_RS03880 0.82 -0.6 884,594 + PFLU_RS03880 0.82 -1.2 884,594 + PFLU_RS03880 0.82 -0.8 884,595 - PFLU_RS03880 0.82 -0.2 884,595 - PFLU_RS03880 0.82 -1.5 884,595 - PFLU_RS03880 0.82 -1.0 884,895 + -1.1 884,907 + -2.8 884,908 - +2.3 884,908 - -1.0 884,908 - +2.3 884,908 - +1.1 884,908 - +0.8 884,987 + -1.3 884,987 + -0.6 884,987 + +1.1 884,987 + -1.5 884,987 + -2.2 884,988 - -1.2 884,988 - +1.3 884,988 - -2.1 884,988 - +0.5 885,060 + +1.2 885,061 - -1.5 885,061 - -1.9 885,063 + +0.0 885,063 + +2.4 885,063 + -2.3 885,063 + +0.3 885,063 + +0.9 885,064 - +2.6 885,064 - +2.7 885,064 - +2.6 885,064 - +1.7 885,064 - -1.0 885,131 + +0.5 885,131 + +1.0 885,132 - +1.1 885,132 - +1.1 885,213 - +0.4 885,213 - +1.1 885,310 + -0.3 885,618 + -1.0 885,637 + -1.6 885,637 + -1.1 885,637 + +0.9 885,638 - +0.4 885,704 - +2.0 885,706 - PFLU_RS03900 0.10 +0.1 885,706 - PFLU_RS03900 0.10 +1.1 885,775 + +0.7 885,775 + -0.3 885,775 + +1.1 885,778 + +2.0 885,778 + -0.9 885,790 + -0.1 885,800 + +1.2 885,880 + +2.7 885,880 + -1.4 885,880 + -2.5 885,880 + -0.8 885,880 + +0.0 885,880 + -1.2 885,880 + -2.3 885,881 - -0.6 885,881 - -0.6 885,881 - +2.1 885,881 - -1.8 885,881 - +1.8 885,881 - -0.5 885,905 + +2.0 885,905 + +0.7 885,905 + -0.2 885,906 - +0.5 885,906 - +1.0 885,906 - -0.4 885,906 - -0.6 885,906 - +0.9 885,918 + -1.1 885,918 + -1.8 885,918 + +1.2 885,919 - +2.1 885,919 - -2.4 885,919 - +0.4 885,919 - -0.1 885,987 - -1.8 885,987 - +0.4 886,010 + -1.5 886,022 + +3.8 886,022 + +0.2 886,022 + +1.1 886,022 + +0.9 886,022 + -1.1 886,022 + +2.2 886,022 + +2.2 886,022 + +1.1 886,022 + -1.8 886,022 + +0.1 886,023 - +0.1 886,023 - -0.1 886,023 - +0.6 886,023 - +1.2 886,023 - +0.4 886,023 - +0.4 886,023 - +2.3 886,023 - +0.2 886,023 - -1.1 886,054 + PFLU_RS03905 0.11 -2.5 886,054 + PFLU_RS03905 0.11 -0.8 886,054 + PFLU_RS03905 0.11 +2.8 886,054 + PFLU_RS03905 0.11 -0.9 886,055 - PFLU_RS03905 0.11 -2.9 886,055 - PFLU_RS03905 0.11 -0.6 886,055 - PFLU_RS03905 0.11 +0.1 886,055 - PFLU_RS03905 0.11 -0.2 886,133 + PFLU_RS03905 0.17 -2.4 886,133 + PFLU_RS03905 0.17 +0.8 886,133 + PFLU_RS03905 0.17 +1.1 886,133 + PFLU_RS03905 0.17 +1.3 886,133 + PFLU_RS03905 0.17 -1.7 886,133 + PFLU_RS03905 0.17 +0.4 886,133 + PFLU_RS03905 0.17 -2.4 886,133 + PFLU_RS03905 0.17 -1.5 886,133 + PFLU_RS03905 0.17 -1.9 886,133 + PFLU_RS03905 0.17 +1.1 886,134 - PFLU_RS03905 0.17 -2.5 886,134 - PFLU_RS03905 0.17 -1.1 886,134 - PFLU_RS03905 0.17 +0.1 886,134 - PFLU_RS03905 0.17 +0.1 886,134 - PFLU_RS03905 0.17 +0.8 886,134 - PFLU_RS03905 0.17 -1.4 886,134 - PFLU_RS03905 0.17 +0.7 886,134 - PFLU_RS03905 0.17 -2.2 886,134 - PFLU_RS03905 0.17 +0.5 886,139 + PFLU_RS03905 0.18 +0.6 886,139 + PFLU_RS03905 0.18 -1.4 886,139 + PFLU_RS03905 0.18 +0.7 886,140 - PFLU_RS03905 0.18 -1.4 886,140 - PFLU_RS03905 0.18 +3.7 886,140 - PFLU_RS03905 0.18 -2.1 886,140 - PFLU_RS03905 0.18 -0.5 886,386 + PFLU_RS03905 0.37 -1.2 886,399 + PFLU_RS03905 0.38 -1.0 886,399 + PFLU_RS03905 0.38 -0.4 886,399 + PFLU_RS03905 0.38 +1.7 886,399 + PFLU_RS03905 0.38 +3.4 886,400 - PFLU_RS03905 0.38 +0.9 886,512 + PFLU_RS03905 0.47 +0.3 886,512 + PFLU_RS03905 0.47 -0.1 886,512 + PFLU_RS03905 0.47 +0.7 886,512 + PFLU_RS03905 0.47 -2.3 886,512 + PFLU_RS03905 0.47 +0.5 886,512 + PFLU_RS03905 0.47 -0.3 886,512 + PFLU_RS03905 0.47 -1.1 886,512 + PFLU_RS03905 0.47 -1.5 886,512 + PFLU_RS03905 0.47 +2.6 886,512 + PFLU_RS03905 0.47 -2.7 886,512 + PFLU_RS03905 0.47 +0.9 886,512 + PFLU_RS03905 0.47 -1.5 886,513 - PFLU_RS03905 0.47 +0.2 886,513 - PFLU_RS03905 0.47 -1.5 886,513 - PFLU_RS03905 0.47 -1.1 886,513 - PFLU_RS03905 0.47 +0.5 886,513 - PFLU_RS03905 0.47 -1.9 886,513 - PFLU_RS03905 0.47 +0.4 886,553 - PFLU_RS03905 0.50 -1.3
Or see this region's nucleotide sequence