Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15190

Experiment: D-Mannitol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannitol (C)
3,403,563	+		PFLU_RS15180	0.34	+0.8
3,403,563	+		PFLU_RS15180	0.34	-0.5
3,403,563	+		PFLU_RS15180	0.34	-0.4
3,403,563	+		PFLU_RS15180	0.34	+1.2
3,403,564	-		PFLU_RS15180	0.34	+0.2
3,403,564	-		PFLU_RS15180	0.34	+1.2
3,403,596	+		PFLU_RS15180	0.41	+0.2
3,403,597	-		PFLU_RS15180	0.42	+0.5
3,403,783	-		PFLU_RS15180	0.84	-0.1
3,403,783	-		PFLU_RS15180	0.84	+1.0
3,403,783	-		PFLU_RS15180	0.84	-0.9
3,403,851	+				-2.0
3,403,880	+				+1.0
3,403,880	+				+0.2
3,403,880	+				+0.2
3,403,880	+				+0.8
3,403,881	-				+1.2
3,403,881	-				-1.4
3,403,881	-				-1.4
3,403,881	-				+1.6
3,403,881	-				+0.4
3,403,881	-				+0.4
3,403,917	+				+0.4
3,403,917	+				+1.5
3,403,917	+				+0.2
3,403,917	+				+0.2
3,403,917	+				+1.2
3,403,917	+				+0.2
3,403,918	-				+0.5
3,403,918	-				-2.3
3,403,918	-				-2.1
3,403,918	-				+0.7
3,403,918	-				-0.8
3,403,918	-				+1.2
3,403,918	-				+0.5
3,403,918	-				-2.3
3,403,957	+				-2.4
3,403,957	+				-1.4
3,403,957	+				+1.9
3,403,957	+				+0.5
3,403,957	+				+0.5
3,403,957	+				-1.2
3,403,957	+				-0.4
3,403,957	+				+0.2
3,403,958	-				-1.8
3,403,958	-				+0.3
3,403,958	-				+1.3
3,403,958	-				-0.2
3,403,958	-				+0.8
3,403,962	+				-1.2
3,403,970	+				+0.3
3,403,970	+				+2.2
3,403,970	+				+1.8
3,403,970	+				+1.2
3,403,970	+				-0.5
3,403,970	+				-1.2
3,403,970	+				+2.2
3,403,970	+				+1.2
3,403,970	+				-1.8
3,403,970	+				-0.4
3,403,970	+				+1.5
3,403,970	+				+0.6
3,403,970	+				+0.3
3,403,970	+				-1.8
3,403,970	+				+0.1
3,403,970	+				-1.6
3,403,970	+				-1.2
3,403,970	+				-2.3
3,403,970	+				+1.9
3,403,970	+				-0.8
3,403,970	+				-0.4
3,403,970	+				+0.2
3,403,970	+				-0.4
3,403,970	+				+0.9
3,403,971	-				+1.0
3,403,971	-				-1.4
3,403,971	-				-2.5
3,403,971	-				+3.4
3,403,971	-				+0.8
3,403,971	-				+0.4
3,403,971	-				-1.2
3,403,971	-				-2.0
3,403,971	-				+0.6
3,403,971	-				-1.1
3,403,971	-				+0.5
3,403,971	-				-0.1
3,403,971	-				+2.2
3,403,971	-				-0.4
3,403,971	-				-1.4
3,403,971	-				+0.0
3,403,971	-				-0.3
3,403,971	-				+1.3
3,403,971	-				-1.4
3,403,973	+				-0.4
3,403,973	+				-0.2
3,403,973	+				-1.4
3,403,973	+				-2.0
3,403,974	-				-1.2
3,403,981	+				-0.4
3,404,012	+				-0.4
3,404,012	+				-1.4
3,404,012	+				+0.6
3,404,012	+				+0.4
3,404,012	+				+0.8
3,404,013	-				-0.1
3,404,013	-				+1.2
3,404,013	-				-1.5
3,404,013	-				-0.6
3,404,036	+		PFLU_RS15185	0.11	+1.2
3,404,037	-		PFLU_RS15185	0.11	-0.4
3,404,037	-		PFLU_RS15185	0.11	+2.2
3,404,043	+		PFLU_RS15185	0.12	-2.0
3,404,043	+		PFLU_RS15185	0.12	+1.2
3,404,044	-		PFLU_RS15185	0.12	+0.1
3,404,143	-		PFLU_RS15185	0.29	+0.2
3,404,192	+		PFLU_RS15185	0.38	-1.6
3,404,192	+		PFLU_RS15185	0.38	-1.4
3,404,193	-		PFLU_RS15185	0.38	-2.2
3,404,193	-		PFLU_RS15185	0.38	-2.4
3,404,193	-		PFLU_RS15185	0.38	-1.0
3,404,193	-		PFLU_RS15185	0.38	+0.8
3,404,224	+		PFLU_RS15185	0.43	-0.2
3,404,225	-		PFLU_RS15185	0.44	+0.2
3,404,225	-		PFLU_RS15185	0.44	-0.4
3,404,240	+		PFLU_RS15185	0.46	+1.2
3,404,240	+		PFLU_RS15185	0.46	-1.8
3,404,240	+		PFLU_RS15185	0.46	-1.2
3,404,240	+		PFLU_RS15185	0.46	+1.1
3,404,240	+		PFLU_RS15185	0.46	-2.3
3,404,240	+		PFLU_RS15185	0.46	-0.1
3,404,240	+		PFLU_RS15185	0.46	-0.8
3,404,240	+		PFLU_RS15185	0.46	+0.6
3,404,241	-		PFLU_RS15185	0.46	-0.8
3,404,241	-		PFLU_RS15185	0.46	+0.8
3,404,241	-		PFLU_RS15185	0.46	+0.6
3,404,241	-		PFLU_RS15185	0.46	-2.4
3,404,241	-		PFLU_RS15185	0.46	+1.4
3,404,242	+		PFLU_RS15185	0.47	+1.5
3,404,243	-		PFLU_RS15185	0.47	+0.4
3,404,243	-		PFLU_RS15185	0.47	-2.0
3,404,243	-		PFLU_RS15185	0.47	-1.2
3,404,243	-		PFLU_RS15185	0.47	+1.9
3,404,243	-		PFLU_RS15185	0.47	+0.6
3,404,243	-		PFLU_RS15185	0.47	+2.2
3,404,324	-		PFLU_RS15185	0.61	+0.2
3,404,341	+		PFLU_RS15185	0.64	-0.8
3,404,342	-		PFLU_RS15185	0.64	+1.2
3,404,342	-		PFLU_RS15185	0.64	+1.7
3,404,342	-		PFLU_RS15185	0.64	-0.9
3,404,361	+		PFLU_RS15185	0.67	+1.8
3,404,361	+		PFLU_RS15185	0.67	+3.3
3,404,362	-		PFLU_RS15185	0.67	-2.0
3,404,362	-		PFLU_RS15185	0.67	+1.8
3,404,366	-		PFLU_RS15185	0.68	+2.8
3,404,387	-		PFLU_RS15185	0.72	-1.3
3,404,405	-		PFLU_RS15185	0.75	-2.2
3,404,438	+		PFLU_RS15185	0.81	-1.4
3,404,438	+		PFLU_RS15185	0.81	-0.8
3,404,440	+		PFLU_RS15185	0.81	+0.6
3,404,440	+		PFLU_RS15185	0.81	-0.8
3,404,440	+		PFLU_RS15185	0.81	-0.4
3,404,440	+		PFLU_RS15185	0.81	-0.1
3,404,440	+		PFLU_RS15185	0.81	-0.2
3,404,440	+		PFLU_RS15185	0.81	+1.9
3,404,440	+		PFLU_RS15185	0.81	-0.6
3,404,441	-		PFLU_RS15185	0.81	+0.7
3,404,441	-		PFLU_RS15185	0.81	+0.2
3,404,441	-		PFLU_RS15185	0.81	-0.8
3,404,441	-		PFLU_RS15185	0.81	-0.8
3,404,441	-		PFLU_RS15185	0.81	-1.7
3,404,441	-		PFLU_RS15185	0.81	-0.8
3,404,441	-		PFLU_RS15185	0.81	+1.2
3,404,441	-		PFLU_RS15185	0.81	+2.2
3,404,441	-		PFLU_RS15185	0.81	-1.1
3,404,441	-		PFLU_RS15185	0.81	-0.2
3,404,441	-		PFLU_RS15185	0.81	-0.4
3,404,441	-		PFLU_RS15185	0.81	-0.7
3,404,441	-		PFLU_RS15185	0.81	+2.0
3,404,444	+		PFLU_RS15185	0.82	-0.5
3,404,445	-		PFLU_RS15185	0.82	+0.7
3,404,445	-		PFLU_RS15185	0.82	-0.6
3,404,445	-		PFLU_RS15185	0.82	+0.1
3,404,445	-		PFLU_RS15185	0.82	+0.4
3,404,445	-		PFLU_RS15185	0.82	+0.9
3,404,469	+		PFLU_RS15185	0.86	+0.2
3,404,469	+		PFLU_RS15185	0.86	+0.2
3,404,469	+		PFLU_RS15185	0.86	-1.2
3,404,469	+		PFLU_RS15185	0.86	-1.2
3,404,470	-		PFLU_RS15185	0.86	+0.2
3,404,470	-		PFLU_RS15185	0.86	+0.5
3,404,470	-		PFLU_RS15185	0.86	+1.0
3,404,470	-		PFLU_RS15185	0.86	+2.2
3,404,470	-		PFLU_RS15185	0.86	+1.1
3,404,502	-				+0.4
3,404,522	+				-1.2
3,404,522	+				+1.8
3,404,522	+				-1.2
3,404,523	-				-0.1
3,404,523	-				-1.8
3,404,523	-				+1.6
3,404,523	-				+2.0
3,404,523	-				-0.5
3,404,523	-				+1.1
3,404,523	-				-0.2
3,404,525	+				-0.8
3,404,526	-				+0.8
3,404,590	+				+1.2
3,404,590	+				-1.2
3,404,590	+				-1.2
3,404,590	+				+0.8
3,404,590	+				+0.6
3,404,591	-				-1.2
3,404,591	-				+1.9
3,404,591	-				+0.8
3,404,607	+				-1.4
3,404,607	+				-1.6
3,404,607	+				+0.8
3,404,607	+				-0.5
3,404,607	+				+0.2
3,404,607	+				+1.9
3,404,607	+				+1.7
3,404,607	+				+0.3
3,404,607	+				+0.2
3,404,607	+				-0.2
3,404,607	+				-0.4
3,404,607	+				-1.9
3,404,607	+				+1.2
3,404,608	-				-1.8
3,404,608	-				-0.8
3,404,608	-				+3.8
3,404,608	-				+0.4
3,404,608	-				+0.7
3,404,608	-				-1.2
3,404,608	-				+1.2
3,404,608	-				+0.9
3,404,608	-				+1.5
3,404,608	-				-0.4
3,404,608	-				-1.6
3,404,608	-				+1.2
3,404,610	-				+1.2
3,404,632	+				+0.8
3,404,633	-				+1.9
3,404,649	+				-1.6
3,404,650	-				-2.0
3,404,651	+				-0.1
3,404,651	+				-0.8
3,404,651	+				-0.4
3,404,651	+				-0.4
3,404,651	+				-1.4
3,404,651	+				+0.6
3,404,652	-				+2.2
3,404,652	-				-2.2
3,404,683	+		PFLU_RS15190	0.11	+0.4
3,404,683	+		PFLU_RS15190	0.11	+0.2
3,404,684	-		PFLU_RS15190	0.11	+0.6
3,404,684	-		PFLU_RS15190	0.11	+0.6
3,404,709	+		PFLU_RS15190	0.13	-1.4
3,404,807	+		PFLU_RS15190	0.19	+1.9
3,404,807	+		PFLU_RS15190	0.19	-0.2
3,404,961	+		PFLU_RS15190	0.29	+1.5
3,404,988	+		PFLU_RS15190	0.31	+0.5
3,405,014	+		PFLU_RS15190	0.33	+0.7
3,405,167	+		PFLU_RS15190	0.43	+1.4
3,405,167	+		PFLU_RS15190	0.43	-0.8
3,405,167	+		PFLU_RS15190	0.43	+1.2
3,405,168	-		PFLU_RS15190	0.43	+0.6
3,405,168	-		PFLU_RS15190	0.43	+1.5
3,405,203	-		PFLU_RS15190	0.45	-0.4
3,405,271	+		PFLU_RS15190	0.50	+0.6
3,405,271	+		PFLU_RS15190	0.50	-0.4
3,405,272	-		PFLU_RS15190	0.50	-0.5
3,405,272	-		PFLU_RS15190	0.50	+0.8
3,405,273	+		PFLU_RS15190	0.50	-2.3
3,405,273	+		PFLU_RS15190	0.50	+0.7
3,405,273	+		PFLU_RS15190	0.50	-0.2
3,405,273	+		PFLU_RS15190	0.50	+4.3
3,405,498	+		PFLU_RS15190	0.65	-1.6
3,405,498	+		PFLU_RS15190	0.65	-1.5
3,405,498	+		PFLU_RS15190	0.65	+0.1
3,405,498	+		PFLU_RS15190	0.65	+2.2
3,405,525	+		PFLU_RS15190	0.67	-1.6
3,405,526	-		PFLU_RS15190	0.67	+0.9
3,405,526	-		PFLU_RS15190	0.67	+1.2
3,405,555	-		PFLU_RS15190	0.69	-2.4
3,405,555	-		PFLU_RS15190	0.69	-0.2
3,405,850	+		PFLU_RS15190	0.89	-0.1
3,406,020	+				-0.7
3,406,020	+				-1.3
3,406,020	+				+1.2
3,406,020	+				-1.8
3,406,020	+				-1.2
3,406,021	-				+0.2
3,406,021	-				+0.7
3,406,021	-				+1.5
3,406,021	-				-0.5
3,406,021	-				+2.0
3,406,021	-				+0.3
3,406,021	-				-1.4
3,406,056	+				+2.2
3,406,056	+				-0.3
3,406,056	+				-1.0
3,406,056	+				+0.4
3,406,056	+				+0.8
3,406,056	+				+2.5
3,406,135	+				+1.3
3,406,136	-		PFLU_RS15195	0.10	-1.1
3,406,375	-		PFLU_RS15195	0.34	-1.8
3,406,375	-		PFLU_RS15195	0.34	+0.4
3,406,491	+		PFLU_RS15195	0.46	+1.9
3,406,492	-		PFLU_RS15195	0.46	-0.8
3,406,634	+		PFLU_RS15195	0.60	+0.8
3,406,811	+		PFLU_RS15195	0.78	+1.8
3,406,811	+		PFLU_RS15195	0.78	+0.2
3,406,811	+		PFLU_RS15195	0.78	+1.0
3,406,812	-		PFLU_RS15195	0.78	-2.2
3,406,812	-		PFLU_RS15195	0.78	+0.8
3,406,812	-		PFLU_RS15195	0.78	+0.9
3,406,812	-		PFLU_RS15195	0.78	+0.8
3,406,895	+		PFLU_RS15195	0.87	-0.4
3,406,895	+		PFLU_RS15195	0.87	-0.8
3,406,895	+		PFLU_RS15195	0.87	+0.2
3,406,896	-		PFLU_RS15195	0.87	+0.5
3,406,896	-		PFLU_RS15195	0.87	-0.8