Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24535 and PFLU_RS24540 are separated by 317 nucleotides PFLU_RS24540 and PFLU_RS24545 are separated by 87 nucleotides PFLU_RS24545 and PFLU_RS24550 are separated by 67 nucleotides
PFLU_RS24535: PFLU_RS24535 - DUF3509 domain-containing protein, at 5,498,242 to 5,498,526
_RS24535
PFLU_RS24540: PFLU_RS24540 - hypothetical protein, at 5,498,844 to 5,499,044
_RS24540
PFLU_RS24545: PFLU_RS24545 - threonine synthase, at 5,499,132 to 5,500,541
_RS24545
PFLU_RS24550: PFLU_RS24550 - homoserine dehydrogenase, at 5,500,609 to 5,501,913
_RS24550
Position (kb) 5499
5500
5501 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5498.133 kb on + strand at 5498.134 kb on - strand at 5498.134 kb on - strand at 5498.191 kb on - strand at 5498.214 kb on + strand at 5498.215 kb on - strand at 5498.215 kb on - strand at 5498.215 kb on - strand at 5498.227 kb on + strand at 5498.227 kb on + strand at 5498.227 kb on + strand at 5498.228 kb on - strand at 5498.228 kb on - strand at 5498.228 kb on - strand at 5498.231 kb on + strand at 5498.231 kb on + strand at 5498.232 kb on - strand at 5498.232 kb on - strand at 5498.232 kb on - strand at 5498.232 kb on - strand at 5498.413 kb on - strand, within PFLU_RS24535 at 5498.475 kb on + strand, within PFLU_RS24535 at 5498.483 kb on + strand, within PFLU_RS24535 at 5498.509 kb on + strand at 5498.509 kb on + strand at 5498.509 kb on + strand at 5498.510 kb on - strand at 5498.510 kb on - strand at 5498.510 kb on - strand at 5498.510 kb on - strand at 5498.510 kb on - strand at 5498.517 kb on + strand at 5498.517 kb on + strand at 5498.517 kb on + strand at 5498.517 kb on + strand at 5498.518 kb on - strand at 5498.518 kb on - strand at 5498.518 kb on - strand at 5498.518 kb on - strand at 5498.518 kb on - strand at 5498.518 kb on - strand at 5498.543 kb on + strand at 5498.543 kb on + strand at 5498.543 kb on + strand at 5498.543 kb on + strand at 5498.543 kb on + strand at 5498.543 kb on + strand at 5498.543 kb on + strand at 5498.544 kb on - strand at 5498.544 kb on - strand at 5498.544 kb on - strand at 5498.544 kb on - strand at 5498.579 kb on + strand at 5498.579 kb on + strand at 5498.579 kb on + strand at 5498.579 kb on + strand at 5498.580 kb on - strand at 5498.580 kb on - strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.584 kb on + strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.585 kb on - strand at 5498.604 kb on - strand at 5498.604 kb on - strand at 5498.604 kb on - strand at 5498.619 kb on - strand at 5498.627 kb on + strand at 5498.627 kb on + strand at 5498.627 kb on + strand at 5498.705 kb on + strand at 5498.705 kb on + strand at 5498.705 kb on + strand at 5498.705 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.761 kb on + strand at 5498.762 kb on - strand at 5498.762 kb on - strand at 5498.763 kb on + strand at 5498.763 kb on + strand at 5498.764 kb on - strand at 5498.764 kb on - strand at 5498.797 kb on + strand at 5498.797 kb on + strand at 5498.797 kb on + strand at 5498.798 kb on - strand at 5498.837 kb on - strand at 5498.896 kb on + strand, within PFLU_RS24540 at 5498.896 kb on + strand, within PFLU_RS24540 at 5498.896 kb on + strand, within PFLU_RS24540 at 5498.896 kb on + strand, within PFLU_RS24540 at 5498.896 kb on + strand, within PFLU_RS24540 at 5498.896 kb on + strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.897 kb on - strand, within PFLU_RS24540 at 5498.907 kb on + strand, within PFLU_RS24540 at 5498.907 kb on + strand, within PFLU_RS24540 at 5498.907 kb on + strand, within PFLU_RS24540 at 5498.907 kb on + strand, within PFLU_RS24540 at 5498.907 kb on + strand, within PFLU_RS24540 at 5498.907 kb on + strand, within PFLU_RS24540 at 5498.908 kb on - strand, within PFLU_RS24540 at 5498.908 kb on - strand, within PFLU_RS24540 at 5498.996 kb on + strand, within PFLU_RS24540 at 5498.996 kb on + strand, within PFLU_RS24540 at 5498.996 kb on + strand, within PFLU_RS24540 at 5498.997 kb on - strand, within PFLU_RS24540 at 5498.997 kb on - strand, within PFLU_RS24540 at 5498.997 kb on - strand, within PFLU_RS24540 at 5498.997 kb on - strand, within PFLU_RS24540 at 5499.013 kb on + strand, within PFLU_RS24540 at 5499.013 kb on + strand, within PFLU_RS24540 at 5499.014 kb on - strand, within PFLU_RS24540 at 5499.042 kb on + strand at 5499.043 kb on - strand at 5499.043 kb on - strand at 5499.043 kb on - strand at 5499.119 kb on + strand at 5499.120 kb on - strand at 5499.120 kb on - strand at 5499.133 kb on + strand at 5499.134 kb on - strand at 5499.134 kb on - strand at 5499.134 kb on - strand at 5499.143 kb on + strand at 5499.842 kb on - strand, within PFLU_RS24545 at 5500.169 kb on - strand, within PFLU_RS24545 at 5500.304 kb on - strand, within PFLU_RS24545 at 5500.454 kb on - strand at 5500.554 kb on + strand at 5500.555 kb on - strand at 5500.555 kb on - strand at 5500.555 kb on - strand at 5500.555 kb on - strand at 5500.610 kb on + strand at 5500.610 kb on + strand at 5500.610 kb on + strand at 5500.610 kb on + strand at 5500.610 kb on + strand at 5500.610 kb on + strand at 5500.611 kb on - strand at 5500.611 kb on - strand at 5500.611 kb on - strand at 5500.611 kb on - strand at 5500.611 kb on - strand at 5500.857 kb on - strand, within PFLU_RS24550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 5,498,133 + -0.8 5,498,134 - +1.2 5,498,134 - -0.5 5,498,191 - +1.1 5,498,214 + +0.2 5,498,215 - -0.1 5,498,215 - -0.1 5,498,215 - -0.5 5,498,227 + +1.5 5,498,227 + -1.2 5,498,227 + +0.9 5,498,228 - +1.6 5,498,228 - -0.8 5,498,228 - +1.7 5,498,231 + +1.6 5,498,231 + +1.6 5,498,232 - -1.0 5,498,232 - +1.6 5,498,232 - +0.6 5,498,232 - +0.9 5,498,413 - PFLU_RS24535 0.60 -1.7 5,498,475 + PFLU_RS24535 0.82 -1.2 5,498,483 + PFLU_RS24535 0.85 -1.9 5,498,509 + +0.2 5,498,509 + +0.4 5,498,509 + -1.3 5,498,510 - +0.8 5,498,510 - -1.2 5,498,510 - -2.3 5,498,510 - +1.0 5,498,510 - -3.0 5,498,517 + +1.5 5,498,517 + -0.1 5,498,517 + +0.3 5,498,517 + +1.3 5,498,518 - -0.1 5,498,518 - -0.9 5,498,518 - -1.9 5,498,518 - +2.8 5,498,518 - +0.3 5,498,518 - +1.2 5,498,543 + +0.2 5,498,543 + -1.0 5,498,543 + +0.6 5,498,543 + +1.8 5,498,543 + -1.0 5,498,543 + +1.1 5,498,543 + +0.8 5,498,544 - +0.3 5,498,544 - -2.1 5,498,544 - -0.8 5,498,544 - -0.2 5,498,579 + -1.4 5,498,579 + -2.0 5,498,579 + +1.2 5,498,579 + -1.4 5,498,580 - +0.9 5,498,580 - -0.4 5,498,584 + -3.5 5,498,584 + -0.3 5,498,584 + -1.8 5,498,584 + +0.9 5,498,584 + +3.0 5,498,584 + -1.2 5,498,584 + +1.2 5,498,584 + +0.2 5,498,584 + +1.0 5,498,585 - +0.4 5,498,585 - +1.3 5,498,585 - +0.4 5,498,585 - -0.6 5,498,585 - +0.3 5,498,585 - +0.6 5,498,585 - +1.0 5,498,585 - -0.8 5,498,585 - -0.3 5,498,585 - -0.7 5,498,585 - +0.6 5,498,585 - +0.4 5,498,585 - -0.3 5,498,585 - +0.6 5,498,585 - -2.0 5,498,585 - +1.0 5,498,604 - -1.7 5,498,604 - +2.2 5,498,604 - -1.5 5,498,619 - -2.9 5,498,627 + +3.4 5,498,627 + +0.4 5,498,627 + +0.1 5,498,705 + +0.6 5,498,705 + +2.5 5,498,705 + -2.7 5,498,705 + -1.2 5,498,761 + +1.1 5,498,761 + -1.3 5,498,761 + -0.8 5,498,761 + +0.0 5,498,761 + -0.2 5,498,761 + -2.2 5,498,761 + +0.5 5,498,761 + -1.2 5,498,761 + +1.8 5,498,762 - +0.5 5,498,762 - -0.8 5,498,763 + -0.4 5,498,763 + +1.5 5,498,764 - +1.5 5,498,764 - -2.6 5,498,797 + -0.3 5,498,797 + -2.7 5,498,797 + +1.5 5,498,798 - -0.1 5,498,837 - -3.1 5,498,896 + PFLU_RS24540 0.26 +1.0 5,498,896 + PFLU_RS24540 0.26 +1.0 5,498,896 + PFLU_RS24540 0.26 +0.1 5,498,896 + PFLU_RS24540 0.26 +0.9 5,498,896 + PFLU_RS24540 0.26 +0.5 5,498,896 + PFLU_RS24540 0.26 +1.1 5,498,897 - PFLU_RS24540 0.26 +2.2 5,498,897 - PFLU_RS24540 0.26 -0.5 5,498,897 - PFLU_RS24540 0.26 -1.2 5,498,897 - PFLU_RS24540 0.26 +0.9 5,498,897 - PFLU_RS24540 0.26 -2.6 5,498,897 - PFLU_RS24540 0.26 +1.0 5,498,897 - PFLU_RS24540 0.26 +1.2 5,498,897 - PFLU_RS24540 0.26 -0.2 5,498,897 - PFLU_RS24540 0.26 -1.4 5,498,897 - PFLU_RS24540 0.26 -1.2 5,498,897 - PFLU_RS24540 0.26 +1.3 5,498,897 - PFLU_RS24540 0.26 +0.2 5,498,897 - PFLU_RS24540 0.26 -0.5 5,498,897 - PFLU_RS24540 0.26 -2.3 5,498,907 + PFLU_RS24540 0.31 -0.4 5,498,907 + PFLU_RS24540 0.31 +0.6 5,498,907 + PFLU_RS24540 0.31 -0.5 5,498,907 + PFLU_RS24540 0.31 +2.8 5,498,907 + PFLU_RS24540 0.31 -2.4 5,498,907 + PFLU_RS24540 0.31 +0.9 5,498,908 - PFLU_RS24540 0.32 -1.0 5,498,908 - PFLU_RS24540 0.32 +0.2 5,498,996 + PFLU_RS24540 0.76 -1.5 5,498,996 + PFLU_RS24540 0.76 -0.6 5,498,996 + PFLU_RS24540 0.76 +0.5 5,498,997 - PFLU_RS24540 0.76 -0.4 5,498,997 - PFLU_RS24540 0.76 +0.2 5,498,997 - PFLU_RS24540 0.76 -2.0 5,498,997 - PFLU_RS24540 0.76 +1.9 5,499,013 + PFLU_RS24540 0.84 +1.0 5,499,013 + PFLU_RS24540 0.84 -0.8 5,499,014 - PFLU_RS24540 0.85 -1.1 5,499,042 + +2.4 5,499,043 - -2.4 5,499,043 - +0.8 5,499,043 - +0.7 5,499,119 + -0.2 5,499,120 - -0.5 5,499,120 - -0.8 5,499,133 + -1.8 5,499,134 - +1.8 5,499,134 - +0.5 5,499,134 - -0.3 5,499,143 + -1.8 5,499,842 - PFLU_RS24545 0.50 +0.8 5,500,169 - PFLU_RS24545 0.74 +0.2 5,500,304 - PFLU_RS24545 0.83 -0.2 5,500,454 - +0.8 5,500,554 + +1.8 5,500,555 - +0.8 5,500,555 - -0.1 5,500,555 - -2.3 5,500,555 - -2.1 5,500,610 + -1.5 5,500,610 + -0.5 5,500,610 + -1.2 5,500,610 + -0.4 5,500,610 + +0.7 5,500,610 + +2.5 5,500,611 - +0.3 5,500,611 - +1.1 5,500,611 - +0.9 5,500,611 - +0.5 5,500,611 - -0.4 5,500,857 - PFLU_RS24550 0.19 +1.8
Or see this region's nucleotide sequence