Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24535

Experiment: D-Mannitol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannitol (C)
5,497,290	+		PFLU_RS24530	0.10	-0.7
5,497,359	+		PFLU_RS24530	0.18	+1.3
5,497,359	+		PFLU_RS24530	0.18	+1.0
5,497,359	+		PFLU_RS24530	0.18	+1.3
5,497,359	+		PFLU_RS24530	0.18	-0.8
5,497,359	+		PFLU_RS24530	0.18	+1.1
5,497,359	+		PFLU_RS24530	0.18	+0.1
5,497,359	+		PFLU_RS24530	0.18	-0.4
5,497,360	-		PFLU_RS24530	0.18	-1.5
5,497,360	-		PFLU_RS24530	0.18	+0.5
5,497,360	-		PFLU_RS24530	0.18	+3.0
5,497,360	-		PFLU_RS24530	0.18	+0.5
5,497,360	-		PFLU_RS24530	0.18	-2.9
5,497,360	-		PFLU_RS24530	0.18	+0.2
5,497,499	+		PFLU_RS24530	0.34	-0.9
5,497,499	+		PFLU_RS24530	0.34	+0.8
5,497,499	+		PFLU_RS24530	0.34	+0.5
5,497,499	+		PFLU_RS24530	0.34	+1.6
5,497,499	+		PFLU_RS24530	0.34	+0.5
5,497,499	+		PFLU_RS24530	0.34	-0.2
5,497,499	+		PFLU_RS24530	0.34	-1.4
5,497,499	+		PFLU_RS24530	0.34	-0.1
5,497,499	+		PFLU_RS24530	0.34	-1.3
5,497,499	+		PFLU_RS24530	0.34	+1.9
5,497,499	+		PFLU_RS24530	0.34	+1.4
5,497,499	+		PFLU_RS24530	0.34	-1.5
5,497,499	+		PFLU_RS24530	0.34	-0.5
5,497,500	-		PFLU_RS24530	0.34	-0.5
5,497,500	-		PFLU_RS24530	0.34	-1.1
5,497,500	-		PFLU_RS24530	0.34	+0.6
5,497,500	-		PFLU_RS24530	0.34	+0.1
5,497,500	-		PFLU_RS24530	0.34	-0.1
5,497,500	-		PFLU_RS24530	0.34	-1.0
5,497,608	+		PFLU_RS24530	0.47	+0.5
5,497,608	+		PFLU_RS24530	0.47	+0.7
5,497,608	+		PFLU_RS24530	0.47	+1.4
5,497,608	+		PFLU_RS24530	0.47	+0.5
5,497,608	+		PFLU_RS24530	0.47	+3.0
5,497,608	+		PFLU_RS24530	0.47	+0.4
5,497,608	+		PFLU_RS24530	0.47	+4.1
5,497,608	+		PFLU_RS24530	0.47	-0.7
5,497,608	+		PFLU_RS24530	0.47	-0.8
5,497,608	+		PFLU_RS24530	0.47	+1.6
5,497,609	-		PFLU_RS24530	0.47	+0.6
5,497,609	-		PFLU_RS24530	0.47	+1.1
5,497,609	-		PFLU_RS24530	0.47	-0.4
5,497,609	-		PFLU_RS24530	0.47	+0.3
5,497,609	-		PFLU_RS24530	0.47	+1.0
5,497,664	+		PFLU_RS24530	0.53	-1.2
5,497,665	-		PFLU_RS24530	0.53	+1.8
5,497,690	+		PFLU_RS24530	0.56	-1.0
5,497,691	-		PFLU_RS24530	0.56	-1.4
5,497,691	-		PFLU_RS24530	0.56	-0.3
5,497,856	+		PFLU_RS24530	0.75	-1.9
5,497,881	-		PFLU_RS24530	0.78	+0.4
5,497,888	+		PFLU_RS24530	0.79	+0.4
5,497,888	+		PFLU_RS24530	0.79	+1.7
5,497,888	+		PFLU_RS24530	0.79	-2.0
5,497,888	+		PFLU_RS24530	0.79	+1.3
5,497,888	+		PFLU_RS24530	0.79	-1.5
5,497,888	+		PFLU_RS24530	0.79	-0.5
5,497,888	+		PFLU_RS24530	0.79	+1.2
5,497,888	+		PFLU_RS24530	0.79	+0.1
5,497,888	+		PFLU_RS24530	0.79	+0.0
5,497,888	+		PFLU_RS24530	0.79	+1.0
5,497,888	+		PFLU_RS24530	0.79	+2.2
5,497,888	+		PFLU_RS24530	0.79	+0.6
5,497,888	+		PFLU_RS24530	0.79	-0.2
5,497,888	+		PFLU_RS24530	0.79	+1.4
5,497,888	+		PFLU_RS24530	0.79	+0.5
5,497,888	+		PFLU_RS24530	0.79	+1.4
5,497,888	+		PFLU_RS24530	0.79	+1.2
5,497,888	+		PFLU_RS24530	0.79	-0.1
5,497,888	+		PFLU_RS24530	0.79	-0.0
5,497,889	-		PFLU_RS24530	0.79	+1.0
5,497,889	-		PFLU_RS24530	0.79	+1.4
5,497,889	-		PFLU_RS24530	0.79	+0.6
5,497,889	-		PFLU_RS24530	0.79	+1.3
5,497,889	-		PFLU_RS24530	0.79	+1.9
5,497,889	-		PFLU_RS24530	0.79	-0.2
5,497,889	-		PFLU_RS24530	0.79	-2.4
5,497,889	-		PFLU_RS24530	0.79	-0.2
5,497,889	-		PFLU_RS24530	0.79	-0.4
5,497,889	-		PFLU_RS24530	0.79	+0.4
5,497,889	-		PFLU_RS24530	0.79	-2.8
5,497,895	-		PFLU_RS24530	0.80	-0.2
5,497,988	+				+1.0
5,497,988	+				-2.3
5,497,988	+				-0.2
5,497,988	+				+0.6
5,497,988	+				+0.1
5,497,988	+				-0.7
5,497,988	+				+0.3
5,497,988	+				+1.0
5,497,988	+				-1.4
5,497,988	+				-2.4
5,497,988	+				-0.2
5,497,989	-				-0.3
5,497,989	-				+1.2
5,497,989	-				-0.0
5,497,989	-				-0.6
5,498,024	+				+1.2
5,498,024	+				+0.3
5,498,024	+				+0.9
5,498,024	+				+0.5
5,498,024	+				+2.5
5,498,024	+				+0.8
5,498,024	+				+1.2
5,498,025	-				-0.7
5,498,025	-				-0.1
5,498,025	-				+0.3
5,498,025	-				+0.8
5,498,025	-				-1.9
5,498,123	-				-1.9
5,498,133	+				-0.8
5,498,134	-				+1.2
5,498,134	-				-0.5
5,498,191	-				+1.1
5,498,214	+				+0.2
5,498,215	-				-0.1
5,498,215	-				-0.1
5,498,215	-				-0.5
5,498,227	+				+1.5
5,498,227	+				-1.2
5,498,227	+				+0.9
5,498,228	-				+1.6
5,498,228	-				-0.8
5,498,228	-				+1.7
5,498,231	+				+1.6
5,498,231	+				+1.6
5,498,232	-				-1.0
5,498,232	-				+1.6
5,498,232	-				+0.6
5,498,232	-				+0.9
5,498,413	-		PFLU_RS24535	0.60	-1.7
5,498,475	+		PFLU_RS24535	0.82	-1.2
5,498,483	+		PFLU_RS24535	0.85	-1.9
5,498,509	+				+0.2
5,498,509	+				+0.4
5,498,509	+				-1.3
5,498,510	-				+0.8
5,498,510	-				-1.2
5,498,510	-				-2.3
5,498,510	-				+1.0
5,498,510	-				-3.0
5,498,517	+				+1.5
5,498,517	+				-0.1
5,498,517	+				+0.3
5,498,517	+				+1.3
5,498,518	-				-0.1
5,498,518	-				-0.9
5,498,518	-				-1.9
5,498,518	-				+2.8
5,498,518	-				+0.3
5,498,518	-				+1.2
5,498,543	+				+0.2
5,498,543	+				-1.0
5,498,543	+				+0.6
5,498,543	+				+1.8
5,498,543	+				-1.0
5,498,543	+				+1.1
5,498,543	+				+0.8
5,498,544	-				+0.3
5,498,544	-				-2.1
5,498,544	-				-0.8
5,498,544	-				-0.2
5,498,579	+				-1.4
5,498,579	+				-2.0
5,498,579	+				+1.2
5,498,579	+				-1.4
5,498,580	-				+0.9
5,498,580	-				-0.4
5,498,584	+				-3.5
5,498,584	+				-0.3
5,498,584	+				-1.8
5,498,584	+				+0.9
5,498,584	+				+3.0
5,498,584	+				-1.2
5,498,584	+				+1.2
5,498,584	+				+0.2
5,498,584	+				+1.0
5,498,585	-				+0.4
5,498,585	-				+1.3
5,498,585	-				+0.4
5,498,585	-				-0.6
5,498,585	-				+0.3
5,498,585	-				+0.6
5,498,585	-				+1.0
5,498,585	-				-0.8
5,498,585	-				-0.3
5,498,585	-				-0.7
5,498,585	-				+0.6
5,498,585	-				+0.4
5,498,585	-				-0.3
5,498,585	-				+0.6
5,498,585	-				-2.0
5,498,585	-				+1.0
5,498,604	-				-1.7
5,498,604	-				+2.2
5,498,604	-				-1.5
5,498,619	-				-2.9
5,498,627	+				+3.4
5,498,627	+				+0.4
5,498,627	+				+0.1
5,498,705	+				+0.6
5,498,705	+				+2.5
5,498,705	+				-2.7
5,498,705	+				-1.2
5,498,761	+				+1.1
5,498,761	+				-1.3
5,498,761	+				-0.8
5,498,761	+				+0.0
5,498,761	+				-0.2
5,498,761	+				-2.2
5,498,761	+				+0.5
5,498,761	+				-1.2
5,498,761	+				+1.8
5,498,762	-				+0.5
5,498,762	-				-0.8
5,498,763	+				-0.4
5,498,763	+				+1.5
5,498,764	-				+1.5
5,498,764	-				-2.6
5,498,797	+				-0.3
5,498,797	+				-2.7
5,498,797	+				+1.5
5,498,798	-				-0.1
5,498,837	-				-3.1
5,498,896	+		PFLU_RS24540	0.26	+1.0
5,498,896	+		PFLU_RS24540	0.26	+1.0
5,498,896	+		PFLU_RS24540	0.26	+0.1
5,498,896	+		PFLU_RS24540	0.26	+0.9
5,498,896	+		PFLU_RS24540	0.26	+0.5
5,498,896	+		PFLU_RS24540	0.26	+1.1
5,498,897	-		PFLU_RS24540	0.26	+2.2
5,498,897	-		PFLU_RS24540	0.26	-0.5
5,498,897	-		PFLU_RS24540	0.26	-1.2
5,498,897	-		PFLU_RS24540	0.26	+0.9
5,498,897	-		PFLU_RS24540	0.26	-2.6
5,498,897	-		PFLU_RS24540	0.26	+1.0
5,498,897	-		PFLU_RS24540	0.26	+1.2
5,498,897	-		PFLU_RS24540	0.26	-0.2
5,498,897	-		PFLU_RS24540	0.26	-1.4
5,498,897	-		PFLU_RS24540	0.26	-1.2
5,498,897	-		PFLU_RS24540	0.26	+1.3
5,498,897	-		PFLU_RS24540	0.26	+0.2
5,498,897	-		PFLU_RS24540	0.26	-0.5
5,498,897	-		PFLU_RS24540	0.26	-2.3
5,498,907	+		PFLU_RS24540	0.31	-0.4
5,498,907	+		PFLU_RS24540	0.31	+0.6
5,498,907	+		PFLU_RS24540	0.31	-0.5
5,498,907	+		PFLU_RS24540	0.31	+2.8
5,498,907	+		PFLU_RS24540	0.31	-2.4
5,498,907	+		PFLU_RS24540	0.31	+0.9
5,498,908	-		PFLU_RS24540	0.32	-1.0
5,498,908	-		PFLU_RS24540	0.32	+0.2
5,498,996	+		PFLU_RS24540	0.76	-1.5
5,498,996	+		PFLU_RS24540	0.76	-0.6
5,498,996	+		PFLU_RS24540	0.76	+0.5
5,498,997	-		PFLU_RS24540	0.76	-0.4
5,498,997	-		PFLU_RS24540	0.76	+0.2
5,498,997	-		PFLU_RS24540	0.76	-2.0
5,498,997	-		PFLU_RS24540	0.76	+1.9
5,499,013	+		PFLU_RS24540	0.84	+1.0
5,499,013	+		PFLU_RS24540	0.84	-0.8
5,499,014	-		PFLU_RS24540	0.85	-1.1
5,499,042	+				+2.4
5,499,043	-				-2.4
5,499,043	-				+0.8
5,499,043	-				+0.7
5,499,119	+				-0.2
5,499,120	-				-0.5
5,499,120	-				-0.8
5,499,133	+				-1.8
5,499,134	-				+1.8
5,499,134	-				+0.5
5,499,134	-				-0.3
5,499,143	+				-1.8