Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01130

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01120 and PFLU_RS01125 overlap by 20 nucleotidesPFLU_RS01125 and PFLU_RS01130 overlap by 4 nucleotidesPFLU_RS01130 and PFLU_RS01135 overlap by 4 nucleotidesPFLU_RS01135 and PFLU_RS01140 are separated by 98 nucleotides PFLU_RS01120: PFLU_RS01120 - amino acid ABC transporter permease, at 246,614 to 247,279 _RS01120 PFLU_RS01125: PFLU_RS01125 - amino acid ABC transporter permease, at 247,260 to 247,919 _RS01125 PFLU_RS01130: PFLU_RS01130 - amino acid ABC transporter ATP-binding protein, at 247,916 to 248,692 _RS01130 PFLU_RS01135: PFLU_RS01135 - transporter substrate-binding domain-containing protein, at 248,689 to 249,543 _RS01135 PFLU_RS01140: PFLU_RS01140 - AAA family ATPase, at 249,642 to 250,802 _RS01140 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 246.917 kb on + strand, within PFLU_RS01120at 246.918 kb on - strand, within PFLU_RS01120at 246.918 kb on - strand, within PFLU_RS01120at 246.918 kb on - strand, within PFLU_RS01120at 246.918 kb on - strand, within PFLU_RS01120at 246.918 kb on - strand, within PFLU_RS01120at 247.130 kb on + strand, within PFLU_RS01120at 247.130 kb on + strand, within PFLU_RS01120at 247.131 kb on - strand, within PFLU_RS01120at 247.131 kb on - strand, within PFLU_RS01120at 247.131 kb on - strand, within PFLU_RS01120at 247.131 kb on - strand, within PFLU_RS01120at 247.145 kb on + strand, within PFLU_RS01120at 247.145 kb on + strand, within PFLU_RS01120at 247.145 kb on + strand, within PFLU_RS01120at 247.145 kb on + strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.146 kb on - strand, within PFLU_RS01120at 247.158 kb on - strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.160 kb on + strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.161 kb on - strand, within PFLU_RS01120at 247.169 kb on + strand, within PFLU_RS01120at 247.170 kb on - strand, within PFLU_RS01120at 247.361 kb on + strand, within PFLU_RS01125at 247.361 kb on + strand, within PFLU_RS01125at 247.361 kb on + strand, within PFLU_RS01125at 247.361 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.380 kb on + strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.381 kb on - strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.434 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.476 kb on + strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.477 kb on - strand, within PFLU_RS01125at 247.662 kb on + strand, within PFLU_RS01125at 247.663 kb on - strand, within PFLU_RS01125at 247.663 kb on - strand, within PFLU_RS01125at 247.668 kb on + strand, within PFLU_RS01125at 247.668 kb on + strand, within PFLU_RS01125at 247.722 kb on + strand, within PFLU_RS01125at 247.722 kb on + strand, within PFLU_RS01125at 247.723 kb on - strand, within PFLU_RS01125at 247.781 kb on + strand, within PFLU_RS01125at 247.781 kb on + strand, within PFLU_RS01125at 247.782 kb on - strand, within PFLU_RS01125at 247.782 kb on - strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.812 kb on + strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.813 kb on - strand, within PFLU_RS01125at 247.831 kb on - strand, within PFLU_RS01125at 247.859 kb on + strandat 247.859 kb on + strandat 247.860 kb on - strandat 247.860 kb on - strandat 247.860 kb on - strandat 247.860 kb on - strandat 248.180 kb on + strand, within PFLU_RS01130at 248.180 kb on + strand, within PFLU_RS01130at 248.180 kb on + strand, within PFLU_RS01130at 248.181 kb on - strand, within PFLU_RS01130at 248.181 kb on - strand, within PFLU_RS01130at 248.181 kb on - strand, within PFLU_RS01130at 248.238 kb on + strand, within PFLU_RS01130at 248.238 kb on + strand, within PFLU_RS01130at 248.296 kb on - strand, within PFLU_RS01130at 248.296 kb on - strand, within PFLU_RS01130at 248.296 kb on - strand, within PFLU_RS01130at 248.700 kb on - strandat 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.788 kb on + strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.789 kb on - strand, within PFLU_RS01135at 248.842 kb on - strand, within PFLU_RS01135at 248.878 kb on + strand, within PFLU_RS01135at 248.976 kb on + strand, within PFLU_RS01135at 248.976 kb on + strand, within PFLU_RS01135at 249.060 kb on + strand, within PFLU_RS01135at 249.061 kb on - strand, within PFLU_RS01135at 249.061 kb on - strand, within PFLU_RS01135at 249.177 kb on + strand, within PFLU_RS01135at 249.177 kb on + strand, within PFLU_RS01135at 249.178 kb on - strand, within PFLU_RS01135at 249.178 kb on - strand, within PFLU_RS01135at 249.178 kb on - strand, within PFLU_RS01135at 249.274 kb on + strand, within PFLU_RS01135at 249.274 kb on + strand, within PFLU_RS01135at 249.274 kb on + strand, within PFLU_RS01135at 249.274 kb on + strand, within PFLU_RS01135at 249.274 kb on + strand, within PFLU_RS01135at 249.275 kb on - strand, within PFLU_RS01135at 249.275 kb on - strand, within PFLU_RS01135at 249.275 kb on - strand, within PFLU_RS01135at 249.275 kb on - strand, within PFLU_RS01135at 249.275 kb on - strand, within PFLU_RS01135at 249.275 kb on - strand, within PFLU_RS01135at 249.460 kb on + strandat 249.460 kb on + strandat 249.460 kb on + strandat 249.460 kb on + strandat 249.461 kb on - strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.469 kb on + strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.470 kb on - strandat 249.477 kb on + strandat 249.478 kb on - strandat 249.575 kb on + strandat 249.576 kb on - strandat 249.576 kb on - strandat 249.576 kb on - strandat 249.576 kb on - strandat 249.576 kb on - strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.589 kb on + strandat 249.590 kb on - strandat 249.590 kb on - strandat 249.590 kb on - strandat 249.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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246,917 + PFLU_RS01120 0.45 +0.9
246,918 - PFLU_RS01120 0.46 -0.0
246,918 - PFLU_RS01120 0.46 -0.8
246,918 - PFLU_RS01120 0.46 +1.6
246,918 - PFLU_RS01120 0.46 +1.9
246,918 - PFLU_RS01120 0.46 -0.1
247,130 + PFLU_RS01120 0.77 +0.9
247,130 + PFLU_RS01120 0.77 +2.5
247,131 - PFLU_RS01120 0.78 -0.2
247,131 - PFLU_RS01120 0.78 -0.7
247,131 - PFLU_RS01120 0.78 -1.1
247,131 - PFLU_RS01120 0.78 +1.4
247,145 + PFLU_RS01120 0.80 +1.2
247,145 + PFLU_RS01120 0.80 +0.8
247,145 + PFLU_RS01120 0.80 -2.5
247,145 + PFLU_RS01120 0.80 -1.8
247,146 - PFLU_RS01120 0.80 -3.4
247,146 - PFLU_RS01120 0.80 -0.3
247,146 - PFLU_RS01120 0.80 -1.9
247,146 - PFLU_RS01120 0.80 +0.8
247,158 - PFLU_RS01120 0.82 -2.4
247,160 + PFLU_RS01120 0.82 +0.4
247,160 + PFLU_RS01120 0.82 +0.3
247,160 + PFLU_RS01120 0.82 -0.2
247,160 + PFLU_RS01120 0.82 -1.3
247,160 + PFLU_RS01120 0.82 -0.3
247,160 + PFLU_RS01120 0.82 -2.4
247,160 + PFLU_RS01120 0.82 -0.7
247,161 - PFLU_RS01120 0.82 +0.0
247,161 - PFLU_RS01120 0.82 -0.4
247,161 - PFLU_RS01120 0.82 -0.0
247,161 - PFLU_RS01120 0.82 -0.2
247,161 - PFLU_RS01120 0.82 -1.1
247,161 - PFLU_RS01120 0.82 -0.2
247,161 - PFLU_RS01120 0.82 -0.4
247,161 - PFLU_RS01120 0.82 +0.7
247,161 - PFLU_RS01120 0.82 +1.6
247,169 + PFLU_RS01120 0.83 -2.2
247,170 - PFLU_RS01120 0.83 -0.3
247,361 + PFLU_RS01125 0.15 -0.1
247,361 + PFLU_RS01125 0.15 +0.3
247,361 + PFLU_RS01125 0.15 -0.0
247,361 + PFLU_RS01125 0.15 +0.5
247,380 + PFLU_RS01125 0.18 +0.9
247,380 + PFLU_RS01125 0.18 +1.3
247,380 + PFLU_RS01125 0.18 -0.5
247,380 + PFLU_RS01125 0.18 -0.3
247,380 + PFLU_RS01125 0.18 +0.2
247,380 + PFLU_RS01125 0.18 +0.3
247,380 + PFLU_RS01125 0.18 -0.8
247,381 - PFLU_RS01125 0.18 -0.8
247,381 - PFLU_RS01125 0.18 -0.9
247,381 - PFLU_RS01125 0.18 -1.8
247,381 - PFLU_RS01125 0.18 -0.2
247,381 - PFLU_RS01125 0.18 +0.7
247,381 - PFLU_RS01125 0.18 -0.1
247,381 - PFLU_RS01125 0.18 -0.8
247,434 + PFLU_RS01125 0.26 -0.4
247,434 + PFLU_RS01125 0.26 +0.4
247,434 + PFLU_RS01125 0.26 +0.2
247,434 + PFLU_RS01125 0.26 -0.2
247,476 + PFLU_RS01125 0.33 +0.0
247,476 + PFLU_RS01125 0.33 +0.5
247,476 + PFLU_RS01125 0.33 +0.6
247,477 - PFLU_RS01125 0.33 +0.4
247,477 - PFLU_RS01125 0.33 -0.7
247,477 - PFLU_RS01125 0.33 +0.1
247,477 - PFLU_RS01125 0.33 +1.3
247,477 - PFLU_RS01125 0.33 -0.0
247,477 - PFLU_RS01125 0.33 -1.2
247,662 + PFLU_RS01125 0.61 -0.7
247,663 - PFLU_RS01125 0.61 +1.1
247,663 - PFLU_RS01125 0.61 +1.3
247,668 + PFLU_RS01125 0.62 +0.1
247,668 + PFLU_RS01125 0.62 +1.8
247,722 + PFLU_RS01125 0.70 -0.4
247,722 + PFLU_RS01125 0.70 -1.4
247,723 - PFLU_RS01125 0.70 +1.3
247,781 + PFLU_RS01125 0.79 +0.2
247,781 + PFLU_RS01125 0.79 -0.5
247,782 - PFLU_RS01125 0.79 -0.6
247,782 - PFLU_RS01125 0.79 +0.2
247,812 + PFLU_RS01125 0.84 +1.5
247,812 + PFLU_RS01125 0.84 -0.9
247,812 + PFLU_RS01125 0.84 -1.0
247,812 + PFLU_RS01125 0.84 -1.0
247,812 + PFLU_RS01125 0.84 -0.0
247,812 + PFLU_RS01125 0.84 +0.0
247,812 + PFLU_RS01125 0.84 -0.6
247,812 + PFLU_RS01125 0.84 -0.4
247,812 + PFLU_RS01125 0.84 +0.6
247,813 - PFLU_RS01125 0.84 -0.4
247,813 - PFLU_RS01125 0.84 +0.1
247,813 - PFLU_RS01125 0.84 +1.1
247,813 - PFLU_RS01125 0.84 -0.7
247,813 - PFLU_RS01125 0.84 -1.1
247,813 - PFLU_RS01125 0.84 -1.7
247,813 - PFLU_RS01125 0.84 +0.3
247,831 - PFLU_RS01125 0.87 +0.1
247,859 + -0.2
247,859 + +0.1
247,860 - -0.0
247,860 - +0.9
247,860 - -0.8
247,860 - +0.6
248,180 + PFLU_RS01130 0.34 -0.6
248,180 + PFLU_RS01130 0.34 +0.7
248,180 + PFLU_RS01130 0.34 +0.2
248,181 - PFLU_RS01130 0.34 +0.1
248,181 - PFLU_RS01130 0.34 -0.8
248,181 - PFLU_RS01130 0.34 +0.2
248,238 + PFLU_RS01130 0.41 +1.0
248,238 + PFLU_RS01130 0.41 +1.4
248,296 - PFLU_RS01130 0.49 -1.1
248,296 - PFLU_RS01130 0.49 +0.8
248,296 - PFLU_RS01130 0.49 -0.5
248,700 - -0.5
248,788 + PFLU_RS01135 0.12 +0.1
248,788 + PFLU_RS01135 0.12 -0.3
248,788 + PFLU_RS01135 0.12 -0.0
248,788 + PFLU_RS01135 0.12 -2.3
248,788 + PFLU_RS01135 0.12 +0.6
248,788 + PFLU_RS01135 0.12 +0.5
248,788 + PFLU_RS01135 0.12 -0.9
248,788 + PFLU_RS01135 0.12 -0.7
248,788 + PFLU_RS01135 0.12 +1.2
248,788 + PFLU_RS01135 0.12 -1.0
248,788 + PFLU_RS01135 0.12 +0.4
248,788 + PFLU_RS01135 0.12 +1.2
248,788 + PFLU_RS01135 0.12 +0.3
248,788 + PFLU_RS01135 0.12 +1.8
248,788 + PFLU_RS01135 0.12 +0.8
248,788 + PFLU_RS01135 0.12 -0.7
248,788 + PFLU_RS01135 0.12 -0.9
248,788 + PFLU_RS01135 0.12 +0.1
248,788 + PFLU_RS01135 0.12 +1.1
248,788 + PFLU_RS01135 0.12 +1.0
248,788 + PFLU_RS01135 0.12 +1.0
248,789 - PFLU_RS01135 0.12 -0.4
248,789 - PFLU_RS01135 0.12 +1.2
248,789 - PFLU_RS01135 0.12 -0.6
248,789 - PFLU_RS01135 0.12 +0.9
248,789 - PFLU_RS01135 0.12 +0.2
248,789 - PFLU_RS01135 0.12 +0.7
248,789 - PFLU_RS01135 0.12 +2.1
248,789 - PFLU_RS01135 0.12 -0.1
248,789 - PFLU_RS01135 0.12 -2.2
248,789 - PFLU_RS01135 0.12 +0.2
248,789 - PFLU_RS01135 0.12 +2.1
248,789 - PFLU_RS01135 0.12 +0.4
248,789 - PFLU_RS01135 0.12 +0.5
248,842 - PFLU_RS01135 0.18 -1.4
248,878 + PFLU_RS01135 0.22 -1.0
248,976 + PFLU_RS01135 0.34 -0.1
248,976 + PFLU_RS01135 0.34 -1.2
249,060 + PFLU_RS01135 0.43 +1.8
249,061 - PFLU_RS01135 0.44 +0.5
249,061 - PFLU_RS01135 0.44 -1.1
249,177 + PFLU_RS01135 0.57 +2.1
249,177 + PFLU_RS01135 0.57 -0.8
249,178 - PFLU_RS01135 0.57 +0.5
249,178 - PFLU_RS01135 0.57 +0.5
249,178 - PFLU_RS01135 0.57 -1.0
249,274 + PFLU_RS01135 0.68 -1.7
249,274 + PFLU_RS01135 0.68 +0.4
249,274 + PFLU_RS01135 0.68 +0.5
249,274 + PFLU_RS01135 0.68 -0.1
249,274 + PFLU_RS01135 0.68 +1.1
249,275 - PFLU_RS01135 0.69 -1.6
249,275 - PFLU_RS01135 0.69 -1.2
249,275 - PFLU_RS01135 0.69 -1.0
249,275 - PFLU_RS01135 0.69 +0.7
249,275 - PFLU_RS01135 0.69 +0.5
249,275 - PFLU_RS01135 0.69 +0.8
249,460 + +0.2
249,460 + -0.9
249,460 + +0.2
249,460 + -1.6
249,461 - +0.1
249,469 + +1.8
249,469 + -0.0
249,469 + +1.5
249,469 + +0.1
249,469 + +2.4
249,469 + +0.1
249,469 + +0.2
249,469 + -0.3
249,469 + -0.5
249,470 - -1.1
249,470 - -2.6
249,470 - +0.6
249,470 - +0.1
249,470 - -0.4
249,470 - +0.9
249,470 - +0.2
249,470 - -0.9
249,477 + +0.4
249,478 - -1.0
249,575 + +0.9
249,576 - +0.4
249,576 - +0.7
249,576 - -0.2
249,576 - +0.2
249,576 - +0.0
249,589 + -0.1
249,589 + -0.6
249,589 + +0.0
249,589 + +0.3
249,589 + -0.1
249,589 + +0.2
249,589 + +0.3
249,589 + -0.1
249,589 + +0.3
249,589 + -2.8
249,590 - +0.8
249,590 - -2.2
249,590 - +0.7
249,590 - +0.1

Or see this region's nucleotide sequence