Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11785

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS11775 and PFLU_RS11785 are separated by 882 nucleotidesPFLU_RS11785 and PFLU_RS11790 are separated by 53 nucleotides PFLU_RS11775: PFLU_RS11775 - alkene reductase, at 2,611,434 to 2,612,567 _RS11775 PFLU_RS11785: PFLU_RS11785 - IS3 family transposase, at 2,613,450 to 2,614,597 _RS11785 PFLU_RS11790: PFLU_RS11790 - zinc-binding dehydrogenase, at 2,614,651 to 2,615,649 _RS11790 Position (kb) 2613 2614 2615Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2612.508 kb on + strandat 2612.508 kb on + strandat 2612.509 kb on - strandat 2612.509 kb on - strandat 2612.604 kb on + strandat 2612.967 kb on - strandat 2612.967 kb on - strandat 2612.971 kb on - strandat 2612.971 kb on - strandat 2612.978 kb on - strandat 2612.978 kb on - strandat 2613.074 kb on + strandat 2613.074 kb on + strandat 2613.074 kb on + strandat 2613.074 kb on + strandat 2613.074 kb on + strandat 2613.075 kb on - strandat 2613.078 kb on + strandat 2613.078 kb on + strandat 2613.078 kb on + strandat 2613.079 kb on - strandat 2613.079 kb on - strandat 2613.079 kb on - strandat 2613.138 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.361 kb on + strandat 2613.362 kb on - strandat 2613.362 kb on - strandat 2613.362 kb on - strandat 2613.362 kb on - strandat 2613.362 kb on - strandat 2613.362 kb on - strandat 2613.365 kb on + strandat 2613.365 kb on + strandat 2613.365 kb on + strandat 2613.365 kb on + strandat 2613.365 kb on + strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.366 kb on - strandat 2613.396 kb on - strandat 2614.649 kb on + strandat 2614.649 kb on + strandat 2614.649 kb on + strandat 2614.652 kb on + strandat 2614.652 kb on + strandat 2614.652 kb on + strandat 2614.652 kb on + strandat 2614.653 kb on - strandat 2614.653 kb on - strandat 2614.653 kb on - strandat 2614.653 kb on - strandat 2614.653 kb on - strandat 2614.653 kb on - strandat 2614.653 kb on - strandat 2614.680 kb on + strandat 2614.680 kb on + strandat 2614.681 kb on - strandat 2614.681 kb on - strandat 2614.681 kb on - strandat 2614.681 kb on - strandat 2614.681 kb on - strandat 2614.733 kb on + strandat 2614.734 kb on - strandat 2614.734 kb on - strandat 2614.734 kb on - strandat 2614.734 kb on - strandat 2614.734 kb on - strandat 2614.734 kb on - strandat 2614.734 kb on - strandat 2614.788 kb on - strand, within PFLU_RS11790at 2614.788 kb on - strand, within PFLU_RS11790at 2615.396 kb on + strand, within PFLU_RS11790at 2615.396 kb on + strand, within PFLU_RS11790at 2615.480 kb on + strand, within PFLU_RS11790at 2615.480 kb on + strand, within PFLU_RS11790at 2615.481 kb on - strand, within PFLU_RS11790at 2615.481 kb on - strand, within PFLU_RS11790at 2615.481 kb on - strand, within PFLU_RS11790

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,612,508 + -1.1
2,612,508 + +1.1
2,612,509 - +0.8
2,612,509 - -2.1
2,612,604 + -1.1
2,612,967 - +1.7
2,612,967 - +0.9
2,612,971 - +1.4
2,612,971 - +0.8
2,612,978 - +1.9
2,612,978 - -1.3
2,613,074 + +2.4
2,613,074 + -1.8
2,613,074 + -0.1
2,613,074 + -1.7
2,613,074 + +1.1
2,613,075 - -1.3
2,613,078 + -0.7
2,613,078 + -0.2
2,613,078 + +0.4
2,613,079 - +0.8
2,613,079 - +1.3
2,613,079 - -0.1
2,613,138 + -0.5
2,613,361 + -0.5
2,613,361 + +1.0
2,613,361 + -1.3
2,613,361 + -1.7
2,613,361 + +1.2
2,613,361 + +1.2
2,613,361 + +1.1
2,613,361 + +0.5
2,613,361 + -1.8
2,613,362 - -2.1
2,613,362 - -1.9
2,613,362 - +0.9
2,613,362 - +1.1
2,613,362 - -2.7
2,613,362 - +1.3
2,613,365 + -2.2
2,613,365 + +1.6
2,613,365 + -0.1
2,613,365 + +1.2
2,613,365 + -0.8
2,613,366 - +1.4
2,613,366 - +1.2
2,613,366 - +0.4
2,613,366 - +0.0
2,613,366 - +0.9
2,613,366 - +1.1
2,613,366 - +0.2
2,613,366 - +2.6
2,613,396 - +0.1
2,614,649 + -2.1
2,614,649 + -0.8
2,614,649 + +2.5
2,614,652 + -0.1
2,614,652 + +1.5
2,614,652 + -1.1
2,614,652 + -2.5
2,614,653 - -1.3
2,614,653 - -1.5
2,614,653 - -1.4
2,614,653 - +1.8
2,614,653 - -0.1
2,614,653 - -1.4
2,614,653 - +0.4
2,614,680 + +1.9
2,614,680 + +0.2
2,614,681 - -1.5
2,614,681 - +0.9
2,614,681 - +1.1
2,614,681 - -3.0
2,614,681 - +2.1
2,614,733 + -1.9
2,614,734 - -0.6
2,614,734 - +1.0
2,614,734 - -0.8
2,614,734 - +1.6
2,614,734 - +0.3
2,614,734 - -3.1
2,614,734 - -0.1
2,614,788 - PFLU_RS11790 0.14 -0.7
2,614,788 - PFLU_RS11790 0.14 +0.8
2,615,396 + PFLU_RS11790 0.75 +1.6
2,615,396 + PFLU_RS11790 0.75 +0.9
2,615,480 + PFLU_RS11790 0.83 -1.2
2,615,480 + PFLU_RS11790 0.83 -1.6
2,615,481 - PFLU_RS11790 0.83 +2.5
2,615,481 - PFLU_RS11790 0.83 -1.1
2,615,481 - PFLU_RS11790 0.83 +1.2

Or see this region's nucleotide sequence