Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11610

Experiment: D-Ribose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose (C)
2,572,707	-		PFLU_RS11595	0.87	-2.1
2,572,707	-		PFLU_RS11595	0.87	+3.0
2,572,721	+		PFLU_RS11595	0.88	-0.4
2,572,722	-		PFLU_RS11595	0.88	+0.0
2,572,758	+				+0.0
2,572,759	-				+1.0
2,572,759	-				-0.6
2,572,759	-				-0.5
2,572,759	-				-2.5
2,572,791	+				-1.2
2,572,792	-				+0.5
2,572,792	-				-2.2
2,572,792	-				-1.8
2,572,792	-				-0.2
2,572,795	+				-2.2
2,572,795	+				+0.2
2,572,795	+				-2.2
2,572,795	+				+0.2
2,572,795	+				+0.2
2,572,795	+				-0.4
2,572,795	+				+0.1
2,572,796	-				+0.4
2,572,796	-				-1.8
2,572,796	-				+1.6
2,572,796	-				+1.4
2,572,796	-				-0.2
2,572,796	-				+0.4
2,572,796	-				-1.3
2,572,796	-				+0.6
2,572,796	-				-1.0
2,573,103	+		PFLU_RS11600	0.56	-1.2
2,573,103	+		PFLU_RS11600	0.56	+0.5
2,573,126	-		PFLU_RS11600	0.61	-0.3
2,573,126	-		PFLU_RS11600	0.61	-1.0
2,573,126	-		PFLU_RS11600	0.61	+1.2
2,573,189	+		PFLU_RS11600	0.75	-1.6
2,573,189	+		PFLU_RS11600	0.75	-0.6
2,573,189	+		PFLU_RS11600	0.75	+0.0
2,573,190	-		PFLU_RS11600	0.75	-1.2
2,573,190	-		PFLU_RS11600	0.75	+1.6
2,573,190	-		PFLU_RS11600	0.75	-0.4
2,573,190	-		PFLU_RS11600	0.75	-1.6
2,573,190	-		PFLU_RS11600	0.75	-2.4
2,573,190	-		PFLU_RS11600	0.75	-2.1
2,573,190	-		PFLU_RS11600	0.75	-0.0
2,573,285	-				-1.8
2,573,553	+		PFLU_RS11605	0.81	-1.8
2,573,554	-		PFLU_RS11605	0.82	-1.4
2,573,554	-		PFLU_RS11605	0.82	-1.4
2,573,554	-		PFLU_RS11605	0.82	-2.0
2,573,555	+		PFLU_RS11605	0.82	+0.4
2,573,555	+		PFLU_RS11605	0.82	+1.4
2,573,555	+		PFLU_RS11605	0.82	+1.0
2,573,555	+		PFLU_RS11605	0.82	-0.2
2,573,555	+		PFLU_RS11605	0.82	-0.4
2,573,555	+		PFLU_RS11605	0.82	-0.6
2,573,555	+		PFLU_RS11605	0.82	-0.6
2,573,555	+		PFLU_RS11605	0.82	+3.7
2,573,556	-		PFLU_RS11605	0.82	-0.2
2,573,556	-		PFLU_RS11605	0.82	-0.3
2,573,556	-		PFLU_RS11605	0.82	-1.6
2,573,556	-		PFLU_RS11605	0.82	+0.8
2,573,556	-		PFLU_RS11605	0.82	+1.4
2,573,556	-		PFLU_RS11605	0.82	-1.0
2,573,556	-		PFLU_RS11605	0.82	+1.4
2,573,556	-		PFLU_RS11605	0.82	+0.7
2,573,556	-		PFLU_RS11605	0.82	-1.2
2,573,556	-		PFLU_RS11605	0.82	+0.4
2,573,556	-		PFLU_RS11605	0.82	-1.6
2,573,556	-		PFLU_RS11605	0.82	-0.3
2,573,556	-		PFLU_RS11605	0.82	+2.1
2,573,596	+				+2.4
2,573,596	+				-2.1
2,573,597	-				-0.4
2,573,620	+				-3.2
2,573,620	+				+0.6
2,573,621	-				+0.1
2,573,641	+				+1.0
2,573,642	-				-1.4
2,573,642	-				-1.4
2,573,777	+				-1.0
2,573,777	+				+1.0
2,573,777	+				-2.3
2,573,777	+				-1.2
2,573,777	+				+1.0
2,573,777	+				+0.2
2,573,777	+				-1.6
2,573,777	+				+0.2
2,573,777	+				+1.5
2,573,777	+				-2.1
2,573,777	+				+2.0
2,573,777	+				-0.6
2,573,778	-				-1.4
2,573,778	-				+0.4
2,573,778	-				-0.6
2,573,778	-				+0.4
2,573,778	-				-1.1
2,573,778	-				+1.4
2,573,778	-				+1.4
2,573,778	-				+0.1
2,573,778	-				+0.5
2,573,778	-				+1.8
2,573,778	-				-0.4
2,573,778	-				+0.7
2,573,778	-				+0.4
2,573,778	-				+0.2
2,573,894	-		PFLU_RS11610	0.18	+1.3
2,573,894	-		PFLU_RS11610	0.18	+1.3
2,574,052	+		PFLU_RS11610	0.32	+1.9
2,574,052	+		PFLU_RS11610	0.32	-1.4
2,574,052	+		PFLU_RS11610	0.32	+1.4
2,574,052	+		PFLU_RS11610	0.32	+0.8
2,574,052	+		PFLU_RS11610	0.32	+1.0
2,574,052	+		PFLU_RS11610	0.32	+1.4
2,574,052	+		PFLU_RS11610	0.32	-2.3
2,574,053	-		PFLU_RS11610	0.32	-1.3
2,574,053	-		PFLU_RS11610	0.32	+0.4
2,574,053	-		PFLU_RS11610	0.32	+1.9
2,574,053	-		PFLU_RS11610	0.32	+0.9
2,574,245	+		PFLU_RS11610	0.50	-1.6
2,574,245	+		PFLU_RS11610	0.50	+0.4
2,574,246	-		PFLU_RS11610	0.50	+0.5
2,574,296	+		PFLU_RS11610	0.55	+1.0
2,574,297	-		PFLU_RS11610	0.55	+1.1
2,574,297	-		PFLU_RS11610	0.55	+1.4
2,574,297	-		PFLU_RS11610	0.55	+2.2
2,574,407	+		PFLU_RS11610	0.65	-0.2
2,574,506	-		PFLU_RS11610	0.74	+1.1
2,574,506	-		PFLU_RS11610	0.74	+2.0
2,574,506	-		PFLU_RS11610	0.74	+0.4
2,574,523	+		PFLU_RS11610	0.75	-0.5
2,574,567	+		PFLU_RS11610	0.79	-0.2
2,574,567	+		PFLU_RS11610	0.79	-2.1
2,574,567	+		PFLU_RS11610	0.79	-0.2
2,574,567	+		PFLU_RS11610	0.79	+0.7
2,574,568	-		PFLU_RS11610	0.80	-2.0
2,574,568	-		PFLU_RS11610	0.80	+0.0
2,574,568	-		PFLU_RS11610	0.80	+1.0
2,574,568	-		PFLU_RS11610	0.80	-1.4
2,574,705	-				+0.3
2,574,705	-				+0.8
2,574,705	-				+1.0
2,574,761	+				+0.8
2,574,762	-				+1.4
2,574,762	-				-0.9
2,574,762	-				-2.1
2,574,807	+				-1.0
2,574,807	+				-2.5
2,574,807	+				+0.1
2,574,807	+				-0.3
2,574,808	-				+1.0
2,574,809	+				-1.0
2,574,810	-				-0.6
2,574,810	-				-0.4
2,574,976	+				+0.6
2,574,976	+				-2.1
2,574,977	-				+1.6
2,574,977	-				+1.7
2,574,977	-				+1.2
2,574,977	-				+0.9
2,575,001	+				+0.7
2,575,002	-				-2.5
2,575,055	+				+2.0
2,575,077	+				-0.2
2,575,078	-				+1.6
2,575,078	-				+1.7
2,575,078	-				-0.2
2,575,118	+				+0.4
2,575,119	-				+0.4
2,575,196	-				-0.6
2,575,196	-				+1.0
2,575,196	-				-1.1
2,575,226	-				-1.7
2,575,226	-				-0.5
2,575,357	+		PFLU_RS11615	0.13	+1.4
2,575,445	-		PFLU_RS11615	0.18	-0.7
2,575,543	+		PFLU_RS11615	0.22	-0.5
2,575,543	+		PFLU_RS11615	0.22	+0.3
2,575,699	+		PFLU_RS11615	0.29	+1.4
2,575,763	-		PFLU_RS11615	0.32	+1.0