Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19280

Experiment: D-Glucuronic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic (C)
4,358,693	+				-0.2
4,358,693	+				-2.2
4,358,693	+				+1.3
4,358,807	+		PFLU_RS19275	0.21	+1.0
4,358,807	+		PFLU_RS19275	0.21	+1.0
4,358,808	-		PFLU_RS19275	0.22	-0.7
4,358,808	-		PFLU_RS19275	0.22	-1.7
4,358,915	+		PFLU_RS19275	0.34	-1.9
4,358,915	+		PFLU_RS19275	0.34	+0.7
4,358,916	-		PFLU_RS19275	0.34	+0.2
4,358,916	-		PFLU_RS19275	0.34	+0.1
4,358,916	-		PFLU_RS19275	0.34	-1.3
4,358,916	-		PFLU_RS19275	0.34	-0.3
4,358,936	+		PFLU_RS19275	0.36	-0.4
4,359,188	-		PFLU_RS19275	0.66	-0.5
4,359,410	+				+2.3
4,359,413	+				-0.0
4,359,414	-				-1.1
4,359,414	-				-0.1
4,359,414	-				+0.7
4,359,414	-				-0.7
4,359,450	+				-0.7
4,359,451	-				-1.2
4,359,451	-				+0.9
4,359,575	+				+0.1
4,359,576	-				+0.8
4,359,576	-				-0.3
4,359,742	+				-2.2
4,359,782	+		PFLU_RS19280	0.11	+2.0
4,359,782	+		PFLU_RS19280	0.11	+0.0
4,359,783	-		PFLU_RS19280	0.11	-0.2
4,359,783	-		PFLU_RS19280	0.11	-0.6
4,359,888	+		PFLU_RS19280	0.19	+2.3
4,359,888	+		PFLU_RS19280	0.19	+0.4
4,359,888	+		PFLU_RS19280	0.19	+1.8
4,359,888	+		PFLU_RS19280	0.19	+0.7
4,359,888	+		PFLU_RS19280	0.19	+2.0
4,359,889	-		PFLU_RS19280	0.19	+0.3
4,359,889	-		PFLU_RS19280	0.19	-1.5
4,359,889	-		PFLU_RS19280	0.19	-0.7
4,359,917	+		PFLU_RS19280	0.22	+0.8
4,359,917	+		PFLU_RS19280	0.22	-2.5
4,359,918	-		PFLU_RS19280	0.22	-0.6
4,359,918	-		PFLU_RS19280	0.22	-2.1
4,360,169	+		PFLU_RS19280	0.42	-0.9
4,360,169	+		PFLU_RS19280	0.42	+0.2
4,360,283	+		PFLU_RS19280	0.51	-1.7
4,360,283	+		PFLU_RS19280	0.51	+2.1
4,360,283	+		PFLU_RS19280	0.51	+0.3
4,360,283	+		PFLU_RS19280	0.51	-0.9
4,360,283	+		PFLU_RS19280	0.51	-0.7
4,360,283	+		PFLU_RS19280	0.51	+2.4
4,360,284	-		PFLU_RS19280	0.51	+0.8
4,360,284	-		PFLU_RS19280	0.51	+0.3
4,360,340	-		PFLU_RS19280	0.55	-0.4
4,360,343	+		PFLU_RS19280	0.55	-1.5
4,360,344	-		PFLU_RS19280	0.55	+1.6
4,360,344	-		PFLU_RS19280	0.55	+1.5
4,360,344	-		PFLU_RS19280	0.55	+1.7
4,360,355	+		PFLU_RS19280	0.56	+1.3
4,360,355	+		PFLU_RS19280	0.56	+0.9
4,360,355	+		PFLU_RS19280	0.56	+2.2
4,360,355	+		PFLU_RS19280	0.56	-0.3
4,360,355	+		PFLU_RS19280	0.56	-0.7
4,360,355	+		PFLU_RS19280	0.56	+1.0
4,360,356	-		PFLU_RS19280	0.56	+0.8
4,360,356	-		PFLU_RS19280	0.56	-3.1
4,360,356	-		PFLU_RS19280	0.56	+0.9
4,360,356	-		PFLU_RS19280	0.56	+0.3
4,360,356	-		PFLU_RS19280	0.56	-0.1
4,360,356	-		PFLU_RS19280	0.56	+1.1
4,360,356	-		PFLU_RS19280	0.56	+0.9
4,360,356	-		PFLU_RS19280	0.56	-0.1
4,360,356	-		PFLU_RS19280	0.56	+1.3
4,360,356	-		PFLU_RS19280	0.56	-1.7
4,360,356	-		PFLU_RS19280	0.56	+0.5
4,360,496	+		PFLU_RS19280	0.67	+0.0
4,360,496	+		PFLU_RS19280	0.67	+0.8
4,360,496	+		PFLU_RS19280	0.67	+1.5
4,360,497	-		PFLU_RS19280	0.68	-1.7
4,360,497	-		PFLU_RS19280	0.68	+1.7
4,360,497	-		PFLU_RS19280	0.68	-0.4
4,360,497	-		PFLU_RS19280	0.68	+0.0
4,360,497	-		PFLU_RS19280	0.68	+0.3
4,360,497	-		PFLU_RS19280	0.68	-1.8
4,360,497	-		PFLU_RS19280	0.68	+0.2
4,360,497	-		PFLU_RS19280	0.68	+0.4
4,360,514	+		PFLU_RS19280	0.69	+2.7
4,360,514	+		PFLU_RS19280	0.69	+0.6
4,360,515	-		PFLU_RS19280	0.69	-0.5
4,360,515	-		PFLU_RS19280	0.69	+0.4
4,360,515	-		PFLU_RS19280	0.69	+1.3
4,360,515	-		PFLU_RS19280	0.69	+0.8
4,360,515	-		PFLU_RS19280	0.69	+1.2
4,360,515	-		PFLU_RS19280	0.69	-1.0
4,360,598	+		PFLU_RS19280	0.76	-1.3
4,360,598	+		PFLU_RS19280	0.76	+2.3
4,360,598	+		PFLU_RS19280	0.76	+1.7
4,360,598	+		PFLU_RS19280	0.76	-0.0
4,360,598	+		PFLU_RS19280	0.76	-0.7
4,360,598	+		PFLU_RS19280	0.76	+1.2
4,360,598	+		PFLU_RS19280	0.76	-0.1
4,360,598	+		PFLU_RS19280	0.76	-2.6
4,360,700	+		PFLU_RS19280	0.84	+0.9
4,360,700	+		PFLU_RS19280	0.84	+0.2
4,360,700	+		PFLU_RS19280	0.84	+1.5
4,360,700	+		PFLU_RS19280	0.84	+0.3
4,360,700	+		PFLU_RS19280	0.84	-1.3
4,360,701	-		PFLU_RS19280	0.84	+0.5
4,360,701	-		PFLU_RS19280	0.84	-0.1
4,360,701	-		PFLU_RS19280	0.84	-2.3
4,360,701	-		PFLU_RS19280	0.84	-1.1
4,360,701	-		PFLU_RS19280	0.84	-3.2
4,360,701	-		PFLU_RS19280	0.84	+1.2
4,360,701	-		PFLU_RS19280	0.84	+1.3
4,360,701	-		PFLU_RS19280	0.84	-2.7
4,360,702	+		PFLU_RS19280	0.84	-0.9
4,360,702	+		PFLU_RS19280	0.84	+0.1
4,360,702	+		PFLU_RS19280	0.84	-1.0
4,360,702	+		PFLU_RS19280	0.84	-0.9
4,360,703	-		PFLU_RS19280	0.84	-1.4
4,360,775	+		PFLU_RS19280	0.90	-0.9
4,360,775	+		PFLU_RS19280	0.90	-1.8
4,360,776	-		PFLU_RS19280	0.90	-1.0
4,360,776	-		PFLU_RS19280	0.90	-1.5
4,360,879	+				-0.7
4,360,879	+				+1.5
4,360,917	-				+0.3
4,360,917	-				-1.1
4,360,917	-				+0.4
4,360,923	-				+0.6
4,360,923	-				-2.4
4,360,966	+				+1.9
4,360,966	+				-1.7
4,360,972	+				-2.0
4,360,972	+				-0.5
4,360,972	+				-2.9
4,360,972	+				-1.3
4,360,972	+				-0.3
4,360,973	-				-0.5
4,360,973	-				-1.0
4,360,982	-				-0.6
4,361,088	+				+1.0
4,361,088	+				+2.8
4,361,088	+				-0.1
4,361,088	+				-0.4
4,361,088	+				-0.0
4,361,089	-				-2.0
4,361,089	-				-3.1
4,361,089	-				-1.4
4,361,115	-				+1.3
4,361,230	+		PFLU_RS19285	0.11	-1.7
4,361,230	+		PFLU_RS19285	0.11	-3.1
4,361,436	+		PFLU_RS19285	0.37	-0.3
4,361,436	+		PFLU_RS19285	0.37	-1.7
4,361,437	-		PFLU_RS19285	0.37	-0.4
4,361,437	-		PFLU_RS19285	0.37	-1.7
4,361,440	+		PFLU_RS19285	0.37	-0.3
4,361,440	+		PFLU_RS19285	0.37	-1.7
4,361,440	+		PFLU_RS19285	0.37	-2.7
4,361,440	+		PFLU_RS19285	0.37	-2.2
4,361,440	+		PFLU_RS19285	0.37	-1.9
4,361,440	+		PFLU_RS19285	0.37	-1.5
4,361,440	+		PFLU_RS19285	0.37	+1.0
4,361,440	+		PFLU_RS19285	0.37	+0.3
4,361,441	-		PFLU_RS19285	0.37	+0.3
4,361,441	-		PFLU_RS19285	0.37	-1.3
4,361,441	-		PFLU_RS19285	0.37	-1.7
4,361,441	-		PFLU_RS19285	0.37	-2.4
4,361,441	-		PFLU_RS19285	0.37	-0.0
4,361,441	-		PFLU_RS19285	0.37	-2.8
4,361,441	-		PFLU_RS19285	0.37	-2.2
4,361,509	+		PFLU_RS19285	0.45	-2.3
4,361,509	+		PFLU_RS19285	0.45	-0.7
4,361,509	+		PFLU_RS19285	0.45	-2.0
4,361,509	+		PFLU_RS19285	0.45	-0.7
4,361,509	+		PFLU_RS19285	0.45	-1.9
4,361,509	+		PFLU_RS19285	0.45	-2.3
4,361,509	+		PFLU_RS19285	0.45	-3.0
4,361,509	+		PFLU_RS19285	0.45	-1.7
4,361,509	+		PFLU_RS19285	0.45	-1.0
4,361,509	+		PFLU_RS19285	0.45	+0.8
4,361,509	+		PFLU_RS19285	0.45	-1.0
4,361,509	+		PFLU_RS19285	0.45	-1.3
4,361,510	-		PFLU_RS19285	0.46	-2.6
4,361,510	-		PFLU_RS19285	0.46	+0.6
4,361,510	-		PFLU_RS19285	0.46	+0.3
4,361,510	-		PFLU_RS19285	0.46	+0.3
4,361,512	-		PFLU_RS19285	0.46	-0.3
4,361,560	+		PFLU_RS19285	0.52	+0.3
4,361,560	+		PFLU_RS19285	0.52	+1.5
4,361,560	+		PFLU_RS19285	0.52	-2.0
4,361,560	+		PFLU_RS19285	0.52	-0.3
4,361,560	+		PFLU_RS19285	0.52	-1.3
4,361,560	+		PFLU_RS19285	0.52	-3.0
4,361,560	+		PFLU_RS19285	0.52	-2.0
4,361,560	+		PFLU_RS19285	0.52	-2.7
4,361,561	-		PFLU_RS19285	0.52	-2.5
4,361,561	-		PFLU_RS19285	0.52	-1.2
4,361,561	-		PFLU_RS19285	0.52	+1.3
4,361,561	-		PFLU_RS19285	0.52	+0.1
4,361,561	-		PFLU_RS19285	0.52	-0.5
4,361,561	-		PFLU_RS19285	0.52	-0.7
4,361,561	-		PFLU_RS19285	0.52	-1.5
4,361,561	-		PFLU_RS19285	0.52	-1.4
4,361,561	-		PFLU_RS19285	0.52	-0.3
4,361,563	+		PFLU_RS19285	0.52	-2.0
4,361,564	-		PFLU_RS19285	0.52	-3.4
4,361,564	-		PFLU_RS19285	0.52	-1.4
4,361,605	+		PFLU_RS19285	0.57	-3.2
4,361,605	+		PFLU_RS19285	0.57	-3.5
4,361,605	+		PFLU_RS19285	0.57	-1.0
4,361,605	+		PFLU_RS19285	0.57	-3.7
4,361,605	+		PFLU_RS19285	0.57	-1.9
4,361,606	-		PFLU_RS19285	0.57	-0.9
4,361,606	-		PFLU_RS19285	0.57	-3.2
4,361,606	-		PFLU_RS19285	0.57	-1.8
4,361,618	-		PFLU_RS19285	0.59	-1.0
4,361,737	+		PFLU_RS19285	0.73	-1.1
4,361,738	-		PFLU_RS19285	0.73	-2.5
4,361,738	-		PFLU_RS19285	0.73	-3.7
4,361,767	+		PFLU_RS19285	0.77	-2.6
4,361,828	-		PFLU_RS19285	0.84	-0.3