Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20930

Experiment: D-Glucuronic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic (C)
4,704,280	+		PFLU_RS20925	0.30	-1.5
4,704,280	+		PFLU_RS20925	0.30	-0.2
4,704,280	+		PFLU_RS20925	0.30	+0.8
4,704,280	+		PFLU_RS20925	0.30	-1.4
4,704,280	+		PFLU_RS20925	0.30	-1.4
4,704,280	+		PFLU_RS20925	0.30	-2.0
4,704,281	-		PFLU_RS20925	0.30	-2.3
4,704,281	-		PFLU_RS20925	0.30	-0.4
4,704,281	-		PFLU_RS20925	0.30	-1.7
4,704,281	-		PFLU_RS20925	0.30	-0.4
4,704,281	-		PFLU_RS20925	0.30	-0.4
4,704,283	+		PFLU_RS20925	0.30	-3.0
4,704,284	-		PFLU_RS20925	0.31	+0.0
4,704,284	-		PFLU_RS20925	0.31	-1.8
4,704,284	-		PFLU_RS20925	0.31	-3.0
4,704,284	-		PFLU_RS20925	0.31	+0.0
4,704,652	+		PFLU_RS20925	0.58	-1.7
4,704,653	-		PFLU_RS20925	0.58	-2.0
4,704,653	-		PFLU_RS20925	0.58	-0.4
4,704,653	-		PFLU_RS20925	0.58	-0.4
4,704,676	+		PFLU_RS20925	0.59	-0.8
4,704,787	+		PFLU_RS20925	0.68	-3.4
4,704,787	+		PFLU_RS20925	0.68	-2.3
4,704,787	+		PFLU_RS20925	0.68	-3.0
4,704,787	+		PFLU_RS20925	0.68	-2.1
4,704,787	+		PFLU_RS20925	0.68	-1.3
4,704,788	-		PFLU_RS20925	0.68	-2.2
4,704,788	-		PFLU_RS20925	0.68	-1.5
4,704,788	-		PFLU_RS20925	0.68	-2.0
4,704,788	-		PFLU_RS20925	0.68	-2.5
4,704,788	-		PFLU_RS20925	0.68	-3.3
4,704,788	-		PFLU_RS20925	0.68	-1.0
4,704,788	-		PFLU_RS20925	0.68	-2.0
4,704,788	-		PFLU_RS20925	0.68	-2.4
4,704,788	-		PFLU_RS20925	0.68	-1.7
4,704,788	-		PFLU_RS20925	0.68	-0.7
4,704,788	-		PFLU_RS20925	0.68	-2.8
4,704,788	-		PFLU_RS20925	0.68	-2.7
4,705,106	-				-1.8
4,705,236	-				-0.4
4,705,253	-				-0.5
4,705,253	-				-1.5
4,705,337	+				-0.1
4,705,337	+				-1.0
4,705,338	-				-2.2
4,705,351	+				-1.0
4,705,352	-				-1.4
4,705,352	-				-1.0
4,705,472	+		PFLU_RS20930	0.17	+2.0
4,705,683	-		PFLU_RS20930	0.33	-3.9
4,705,683	-		PFLU_RS20930	0.33	-0.6
4,705,691	+		PFLU_RS20930	0.33	-1.8
4,705,691	+		PFLU_RS20930	0.33	-1.8
4,705,691	+		PFLU_RS20930	0.33	-3.0
4,705,691	+		PFLU_RS20930	0.33	-0.2
4,705,691	+		PFLU_RS20930	0.33	-2.5
4,705,692	-		PFLU_RS20930	0.34	-2.2
4,705,692	-		PFLU_RS20930	0.34	-1.4
4,705,692	-		PFLU_RS20930	0.34	-1.7
4,705,692	-		PFLU_RS20930	0.34	-1.2
4,705,692	-		PFLU_RS20930	0.34	-0.4
4,705,692	-		PFLU_RS20930	0.34	-3.0
4,705,829	+		PFLU_RS20930	0.44	-2.5
4,705,829	+		PFLU_RS20930	0.44	-1.8
4,705,998	+		PFLU_RS20930	0.57	-2.2
4,705,998	+		PFLU_RS20930	0.57	+0.0
4,705,998	+		PFLU_RS20930	0.57	-0.9
4,705,998	+		PFLU_RS20930	0.57	-2.1
4,705,998	+		PFLU_RS20930	0.57	-1.0
4,705,999	-		PFLU_RS20930	0.57	+0.6
4,706,101	+		PFLU_RS20930	0.64	-0.4
4,706,101	+		PFLU_RS20930	0.64	-2.4
4,706,101	+		PFLU_RS20930	0.64	-2.5
4,706,102	-		PFLU_RS20930	0.64	-2.3
4,706,102	-		PFLU_RS20930	0.64	-2.5
4,706,269	+		PFLU_RS20930	0.77	-3.1
4,706,269	+		PFLU_RS20930	0.77	-2.4
4,706,270	-		PFLU_RS20930	0.77	-1.9
4,706,270	-		PFLU_RS20930	0.77	-2.8
4,706,396	+		PFLU_RS20930	0.87	+0.0
4,706,469	+				-3.2
4,706,469	+				-0.7
4,706,469	+				-1.0
4,706,469	+				-2.0
4,706,470	-				-1.5
4,706,470	-				-0.7
4,706,471	+				-2.1
4,706,471	+				-1.4
4,706,471	+				-2.2
4,706,471	+				-2.5
4,706,471	+				-1.4
4,706,472	-				-1.9
4,706,472	-				-2.8
4,706,472	-				-1.0
4,706,472	-				-2.0
4,706,472	-				-2.0
4,706,472	-				-3.2
4,706,472	-				-0.4
4,706,472	-				+0.6
4,706,472	-				+0.0
4,706,588	+				+1.0
4,706,588	+				-0.7
4,706,588	+				+1.6
4,706,589	-				-0.5
4,706,589	-				-2.5
4,706,589	-				-0.6
4,706,589	-				-1.8
4,706,589	-				-1.4
4,706,589	-				-2.1
4,706,589	-				-2.9
4,706,589	-				-2.1
4,706,632	+				+1.4
4,706,633	-				-0.7
4,706,633	-				+1.6
4,706,664	+		PFLU_RS20935	0.12	+1.4
4,706,664	+		PFLU_RS20935	0.12	+2.3
4,706,664	+		PFLU_RS20935	0.12	+0.6
4,706,664	+		PFLU_RS20935	0.12	+0.0
4,706,665	-		PFLU_RS20935	0.12	-2.4
4,706,665	-		PFLU_RS20935	0.12	+1.5
4,706,752	+		PFLU_RS20935	0.44	+1.6
4,706,753	-		PFLU_RS20935	0.45	+0.6
4,706,789	+		PFLU_RS20935	0.58	+1.5
4,706,789	+		PFLU_RS20935	0.58	-0.3
4,706,789	+		PFLU_RS20935	0.58	-1.5
4,706,790	-		PFLU_RS20935	0.58	+0.6
4,706,790	-		PFLU_RS20935	0.58	+0.2
4,706,835	-		PFLU_RS20935	0.74	+0.0
4,706,853	+		PFLU_RS20935	0.81	+0.7
4,706,853	+		PFLU_RS20935	0.81	-0.1
4,706,853	+		PFLU_RS20935	0.81	-2.8
4,706,854	-		PFLU_RS20935	0.81	+0.1
4,706,854	-		PFLU_RS20935	0.81	+2.0
4,706,911	+				-2.5
4,706,911	+				-0.4
4,706,911	+				+0.0
4,706,911	+				-2.1
4,706,911	+				+0.4
4,706,911	+				+1.5
4,706,911	+				-1.0
4,706,912	-				+0.9
4,706,912	-				-2.8
4,706,912	-				-2.9
4,706,912	-				+0.6
4,706,912	-				+0.3
4,706,912	-				+1.0
4,706,912	-				+1.8
4,706,912	-				+0.4
4,706,912	-				-0.1
4,706,912	-				-0.5
4,706,912	-				-1.4
4,706,915	+				+1.3
4,706,915	+				+0.9
4,706,915	+				+1.0
4,706,916	-				-1.2
4,706,971	+				+1.9
4,706,972	-				+0.0
4,706,972	-				-0.7
4,706,998	+				-0.3
4,707,046	+				+1.6
4,707,046	+				-0.5
4,707,047	-				+0.1
4,707,047	-				-0.7
4,707,047	-				+1.1
4,707,047	-				+0.9
4,707,047	-				-2.5
4,707,047	-				+0.9
4,707,058	+				-0.5
4,707,059	-				-0.7
4,707,152	-				+0.2
4,707,152	-				+0.3
4,707,177	+				-1.0
4,707,177	+				+1.3
4,707,178	-				-0.8
4,707,178	-				-2.6
4,707,234	+		PFLU_RS20940	0.13	-0.4
4,707,313	+		PFLU_RS20940	0.21	-1.5
4,707,313	+		PFLU_RS20940	0.21	+1.2
4,707,366	-		PFLU_RS20940	0.27	-1.0
4,707,366	-		PFLU_RS20940	0.27	+0.9
4,707,410	-		PFLU_RS20940	0.32	+0.0
4,707,421	+		PFLU_RS20940	0.33	+0.9
4,707,421	+		PFLU_RS20940	0.33	-1.4
4,707,421	+		PFLU_RS20940	0.33	-1.7
4,707,421	+		PFLU_RS20940	0.33	+0.0
4,707,421	+		PFLU_RS20940	0.33	-2.1
4,707,422	-		PFLU_RS20940	0.33	+1.0
4,707,422	-		PFLU_RS20940	0.33	+0.7
4,707,422	-		PFLU_RS20940	0.33	-0.2
4,707,422	-		PFLU_RS20940	0.33	-2.8
4,707,422	-		PFLU_RS20940	0.33	+2.6
4,707,422	-		PFLU_RS20940	0.33	+2.4
4,707,422	-		PFLU_RS20940	0.33	+0.3
4,707,422	-		PFLU_RS20940	0.33	-1.7
4,707,422	-		PFLU_RS20940	0.33	+2.3
4,707,493	+		PFLU_RS20940	0.41	+0.3
4,707,493	+		PFLU_RS20940	0.41	-0.7
4,707,493	+		PFLU_RS20940	0.41	+0.6
4,707,493	+		PFLU_RS20940	0.41	-1.8
4,707,493	+		PFLU_RS20940	0.41	-2.0
4,707,493	+		PFLU_RS20940	0.41	+0.9
4,707,493	+		PFLU_RS20940	0.41	+0.0
4,707,494	-		PFLU_RS20940	0.41	-0.6
4,707,494	-		PFLU_RS20940	0.41	+0.1
4,707,565	+		PFLU_RS20940	0.49	-2.3
4,707,565	+		PFLU_RS20940	0.49	-0.0
4,707,565	+		PFLU_RS20940	0.49	+0.3