Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20925

Experiment: D-Glucuronic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20920 and PFLU_RS20925 are separated by 325 nucleotidesPFLU_RS20925 and PFLU_RS20930 are separated by 19 nucleotides PFLU_RS20920: PFLU_RS20920 - FadR family transcriptional regulator, at 4,702,824 to 4,703,543 _RS20920 PFLU_RS20925: PFLU_RS20925 - MFS transporter, at 4,703,869 to 4,705,227 _RS20925 PFLU_RS20930: PFLU_RS20930 - glucarate dehydratase, at 4,705,247 to 4,706,572 _RS20930 Position (kb) 4703 4704 4705 4706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4703.057 kb on + strand, within PFLU_RS20920at 4703.057 kb on + strand, within PFLU_RS20920at 4703.058 kb on - strand, within PFLU_RS20920at 4703.058 kb on - strand, within PFLU_RS20920at 4703.058 kb on - strand, within PFLU_RS20920at 4703.140 kb on + strand, within PFLU_RS20920at 4703.140 kb on + strand, within PFLU_RS20920at 4703.384 kb on + strand, within PFLU_RS20920at 4703.513 kb on + strandat 4703.545 kb on - strandat 4703.579 kb on + strandat 4703.580 kb on - strandat 4703.756 kb on + strandat 4703.756 kb on + strandat 4703.758 kb on + strandat 4703.758 kb on + strandat 4703.758 kb on + strandat 4703.759 kb on - strandat 4703.986 kb on + strandat 4703.986 kb on + strandat 4703.986 kb on + strandat 4703.987 kb on - strandat 4703.987 kb on - strandat 4704.058 kb on + strand, within PFLU_RS20925at 4704.059 kb on - strand, within PFLU_RS20925at 4704.059 kb on - strand, within PFLU_RS20925at 4704.092 kb on - strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.144 kb on + strand, within PFLU_RS20925at 4704.145 kb on - strand, within PFLU_RS20925at 4704.145 kb on - strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.223 kb on + strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.224 kb on - strand, within PFLU_RS20925at 4704.280 kb on + strand, within PFLU_RS20925at 4704.280 kb on + strand, within PFLU_RS20925at 4704.280 kb on + strand, within PFLU_RS20925at 4704.280 kb on + strand, within PFLU_RS20925at 4704.280 kb on + strand, within PFLU_RS20925at 4704.280 kb on + strand, within PFLU_RS20925at 4704.281 kb on - strand, within PFLU_RS20925at 4704.281 kb on - strand, within PFLU_RS20925at 4704.281 kb on - strand, within PFLU_RS20925at 4704.281 kb on - strand, within PFLU_RS20925at 4704.281 kb on - strand, within PFLU_RS20925at 4704.283 kb on + strand, within PFLU_RS20925at 4704.284 kb on - strand, within PFLU_RS20925at 4704.284 kb on - strand, within PFLU_RS20925at 4704.284 kb on - strand, within PFLU_RS20925at 4704.284 kb on - strand, within PFLU_RS20925at 4704.652 kb on + strand, within PFLU_RS20925at 4704.653 kb on - strand, within PFLU_RS20925at 4704.653 kb on - strand, within PFLU_RS20925at 4704.653 kb on - strand, within PFLU_RS20925at 4704.676 kb on + strand, within PFLU_RS20925at 4704.787 kb on + strand, within PFLU_RS20925at 4704.787 kb on + strand, within PFLU_RS20925at 4704.787 kb on + strand, within PFLU_RS20925at 4704.787 kb on + strand, within PFLU_RS20925at 4704.787 kb on + strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4704.788 kb on - strand, within PFLU_RS20925at 4705.106 kb on - strandat 4705.236 kb on - strandat 4705.253 kb on - strandat 4705.253 kb on - strandat 4705.337 kb on + strandat 4705.337 kb on + strandat 4705.338 kb on - strandat 4705.351 kb on + strandat 4705.352 kb on - strandat 4705.352 kb on - strandat 4705.472 kb on + strand, within PFLU_RS20930at 4705.683 kb on - strand, within PFLU_RS20930at 4705.683 kb on - strand, within PFLU_RS20930at 4705.691 kb on + strand, within PFLU_RS20930at 4705.691 kb on + strand, within PFLU_RS20930at 4705.691 kb on + strand, within PFLU_RS20930at 4705.691 kb on + strand, within PFLU_RS20930at 4705.691 kb on + strand, within PFLU_RS20930at 4705.692 kb on - strand, within PFLU_RS20930at 4705.692 kb on - strand, within PFLU_RS20930at 4705.692 kb on - strand, within PFLU_RS20930at 4705.692 kb on - strand, within PFLU_RS20930at 4705.692 kb on - strand, within PFLU_RS20930at 4705.692 kb on - strand, within PFLU_RS20930at 4705.829 kb on + strand, within PFLU_RS20930at 4705.829 kb on + strand, within PFLU_RS20930at 4705.998 kb on + strand, within PFLU_RS20930at 4705.998 kb on + strand, within PFLU_RS20930at 4705.998 kb on + strand, within PFLU_RS20930at 4705.998 kb on + strand, within PFLU_RS20930at 4705.998 kb on + strand, within PFLU_RS20930at 4705.999 kb on - strand, within PFLU_RS20930at 4706.101 kb on + strand, within PFLU_RS20930at 4706.101 kb on + strand, within PFLU_RS20930at 4706.101 kb on + strand, within PFLU_RS20930at 4706.102 kb on - strand, within PFLU_RS20930at 4706.102 kb on - strand, within PFLU_RS20930

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic (C)
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4,703,057 + PFLU_RS20920 0.32 -0.2
4,703,057 + PFLU_RS20920 0.32 +0.8
4,703,058 - PFLU_RS20920 0.33 +2.4
4,703,058 - PFLU_RS20920 0.33 -0.1
4,703,058 - PFLU_RS20920 0.33 +1.0
4,703,140 + PFLU_RS20920 0.44 -0.0
4,703,140 + PFLU_RS20920 0.44 -2.3
4,703,384 + PFLU_RS20920 0.78 -1.9
4,703,513 + +1.7
4,703,545 - -2.0
4,703,579 + -0.4
4,703,580 - -1.4
4,703,756 + -0.0
4,703,756 + +1.1
4,703,758 + +2.0
4,703,758 + -1.5
4,703,758 + +0.8
4,703,759 - +0.8
4,703,986 + +0.0
4,703,986 + -2.9
4,703,986 + -2.4
4,703,987 - -1.0
4,703,987 - -1.5
4,704,058 + PFLU_RS20925 0.14 -1.7
4,704,059 - PFLU_RS20925 0.14 -1.8
4,704,059 - PFLU_RS20925 0.14 -1.1
4,704,092 - PFLU_RS20925 0.16 -2.5
4,704,144 + PFLU_RS20925 0.20 -2.0
4,704,144 + PFLU_RS20925 0.20 +1.0
4,704,144 + PFLU_RS20925 0.20 -1.5
4,704,144 + PFLU_RS20925 0.20 -0.5
4,704,144 + PFLU_RS20925 0.20 -0.8
4,704,144 + PFLU_RS20925 0.20 -1.7
4,704,144 + PFLU_RS20925 0.20 -0.7
4,704,145 - PFLU_RS20925 0.20 -1.0
4,704,145 - PFLU_RS20925 0.20 -2.3
4,704,223 + PFLU_RS20925 0.26 -0.2
4,704,223 + PFLU_RS20925 0.26 +0.3
4,704,223 + PFLU_RS20925 0.26 -3.1
4,704,223 + PFLU_RS20925 0.26 -1.5
4,704,223 + PFLU_RS20925 0.26 -2.3
4,704,223 + PFLU_RS20925 0.26 -2.6
4,704,223 + PFLU_RS20925 0.26 -3.3
4,704,223 + PFLU_RS20925 0.26 -0.7
4,704,223 + PFLU_RS20925 0.26 -0.4
4,704,223 + PFLU_RS20925 0.26 -0.7
4,704,224 - PFLU_RS20925 0.26 +0.0
4,704,224 - PFLU_RS20925 0.26 -1.1
4,704,224 - PFLU_RS20925 0.26 +1.6
4,704,224 - PFLU_RS20925 0.26 -1.5
4,704,224 - PFLU_RS20925 0.26 -1.0
4,704,224 - PFLU_RS20925 0.26 -1.8
4,704,224 - PFLU_RS20925 0.26 -2.5
4,704,224 - PFLU_RS20925 0.26 +0.6
4,704,224 - PFLU_RS20925 0.26 -1.6
4,704,280 + PFLU_RS20925 0.30 -1.5
4,704,280 + PFLU_RS20925 0.30 -0.2
4,704,280 + PFLU_RS20925 0.30 +0.8
4,704,280 + PFLU_RS20925 0.30 -1.4
4,704,280 + PFLU_RS20925 0.30 -1.4
4,704,280 + PFLU_RS20925 0.30 -2.0
4,704,281 - PFLU_RS20925 0.30 -2.3
4,704,281 - PFLU_RS20925 0.30 -0.4
4,704,281 - PFLU_RS20925 0.30 -1.7
4,704,281 - PFLU_RS20925 0.30 -0.4
4,704,281 - PFLU_RS20925 0.30 -0.4
4,704,283 + PFLU_RS20925 0.30 -3.0
4,704,284 - PFLU_RS20925 0.31 +0.0
4,704,284 - PFLU_RS20925 0.31 -1.8
4,704,284 - PFLU_RS20925 0.31 -3.0
4,704,284 - PFLU_RS20925 0.31 +0.0
4,704,652 + PFLU_RS20925 0.58 -1.7
4,704,653 - PFLU_RS20925 0.58 -2.0
4,704,653 - PFLU_RS20925 0.58 -0.4
4,704,653 - PFLU_RS20925 0.58 -0.4
4,704,676 + PFLU_RS20925 0.59 -0.8
4,704,787 + PFLU_RS20925 0.68 -3.4
4,704,787 + PFLU_RS20925 0.68 -2.3
4,704,787 + PFLU_RS20925 0.68 -3.0
4,704,787 + PFLU_RS20925 0.68 -2.1
4,704,787 + PFLU_RS20925 0.68 -1.3
4,704,788 - PFLU_RS20925 0.68 -2.2
4,704,788 - PFLU_RS20925 0.68 -1.5
4,704,788 - PFLU_RS20925 0.68 -2.0
4,704,788 - PFLU_RS20925 0.68 -2.5
4,704,788 - PFLU_RS20925 0.68 -3.3
4,704,788 - PFLU_RS20925 0.68 -1.0
4,704,788 - PFLU_RS20925 0.68 -2.0
4,704,788 - PFLU_RS20925 0.68 -2.4
4,704,788 - PFLU_RS20925 0.68 -1.7
4,704,788 - PFLU_RS20925 0.68 -0.7
4,704,788 - PFLU_RS20925 0.68 -2.8
4,704,788 - PFLU_RS20925 0.68 -2.7
4,705,106 - -1.8
4,705,236 - -0.4
4,705,253 - -0.5
4,705,253 - -1.5
4,705,337 + -0.1
4,705,337 + -1.0
4,705,338 - -2.2
4,705,351 + -1.0
4,705,352 - -1.4
4,705,352 - -1.0
4,705,472 + PFLU_RS20930 0.17 +2.0
4,705,683 - PFLU_RS20930 0.33 -3.9
4,705,683 - PFLU_RS20930 0.33 -0.6
4,705,691 + PFLU_RS20930 0.33 -1.8
4,705,691 + PFLU_RS20930 0.33 -1.8
4,705,691 + PFLU_RS20930 0.33 -3.0
4,705,691 + PFLU_RS20930 0.33 -0.2
4,705,691 + PFLU_RS20930 0.33 -2.5
4,705,692 - PFLU_RS20930 0.34 -2.2
4,705,692 - PFLU_RS20930 0.34 -1.4
4,705,692 - PFLU_RS20930 0.34 -1.7
4,705,692 - PFLU_RS20930 0.34 -1.2
4,705,692 - PFLU_RS20930 0.34 -0.4
4,705,692 - PFLU_RS20930 0.34 -3.0
4,705,829 + PFLU_RS20930 0.44 -2.5
4,705,829 + PFLU_RS20930 0.44 -1.8
4,705,998 + PFLU_RS20930 0.57 -2.2
4,705,998 + PFLU_RS20930 0.57 +0.0
4,705,998 + PFLU_RS20930 0.57 -0.9
4,705,998 + PFLU_RS20930 0.57 -2.1
4,705,998 + PFLU_RS20930 0.57 -1.0
4,705,999 - PFLU_RS20930 0.57 +0.6
4,706,101 + PFLU_RS20930 0.64 -0.4
4,706,101 + PFLU_RS20930 0.64 -2.4
4,706,101 + PFLU_RS20930 0.64 -2.5
4,706,102 - PFLU_RS20930 0.64 -2.3
4,706,102 - PFLU_RS20930 0.64 -2.5

Or see this region's nucleotide sequence