Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11640

Experiment: D-Glucuronic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic (C)
2,581,382	+				+0.6
2,581,382	+				+1.3
2,581,382	+				-1.9
2,581,383	-				+0.5
2,581,617	+		PFLU_RS11635	0.24	-3.2
2,581,618	-		PFLU_RS11635	0.25	+3.5
2,581,789	+		PFLU_RS11635	0.42	+0.5
2,581,789	+		PFLU_RS11635	0.42	+0.2
2,581,789	+		PFLU_RS11635	0.42	-0.6
2,581,789	+		PFLU_RS11635	0.42	-0.7
2,581,790	-		PFLU_RS11635	0.42	-0.1
2,581,790	-		PFLU_RS11635	0.42	-0.3
2,581,790	-		PFLU_RS11635	0.42	+0.5
2,581,790	-		PFLU_RS11635	0.42	-2.9
2,581,790	-		PFLU_RS11635	0.42	+1.4
2,581,806	+		PFLU_RS11635	0.44	-1.2
2,581,889	-		PFLU_RS11635	0.52	+1.0
2,581,889	-		PFLU_RS11635	0.52	-0.3
2,581,975	+		PFLU_RS11635	0.61	+1.5
2,581,975	+		PFLU_RS11635	0.61	-1.0
2,581,975	+		PFLU_RS11635	0.61	-0.9
2,581,975	+		PFLU_RS11635	0.61	-0.9
2,581,976	-		PFLU_RS11635	0.61	-0.3
2,581,976	-		PFLU_RS11635	0.61	-0.1
2,581,976	-		PFLU_RS11635	0.61	+0.2
2,581,976	-		PFLU_RS11635	0.61	+0.5
2,581,976	-		PFLU_RS11635	0.61	-0.5
2,581,976	-		PFLU_RS11635	0.61	+0.5
2,581,976	-		PFLU_RS11635	0.61	+0.5
2,581,982	-		PFLU_RS11635	0.61	-1.1
2,581,982	-		PFLU_RS11635	0.61	+1.0
2,581,982	-		PFLU_RS11635	0.61	-0.2
2,581,982	-		PFLU_RS11635	0.61	+0.7
2,581,982	-		PFLU_RS11635	0.61	-0.1
2,582,014	+		PFLU_RS11635	0.65	+0.7
2,582,014	+		PFLU_RS11635	0.65	+0.8
2,582,015	-		PFLU_RS11635	0.65	+0.5
2,582,127	+		PFLU_RS11635	0.76	-0.4
2,582,127	+		PFLU_RS11635	0.76	-0.9
2,582,127	+		PFLU_RS11635	0.76	-0.1
2,582,127	+		PFLU_RS11635	0.76	+1.6
2,582,127	+		PFLU_RS11635	0.76	-0.9
2,582,127	+		PFLU_RS11635	0.76	+0.3
2,582,127	+		PFLU_RS11635	0.76	+0.7
2,582,127	+		PFLU_RS11635	0.76	+0.6
2,582,128	-		PFLU_RS11635	0.76	-0.3
2,582,128	-		PFLU_RS11635	0.76	+1.1
2,582,128	-		PFLU_RS11635	0.76	-1.3
2,582,128	-		PFLU_RS11635	0.76	+0.1
2,582,128	-		PFLU_RS11635	0.76	+0.9
2,582,128	-		PFLU_RS11635	0.76	+0.5
2,582,128	-		PFLU_RS11635	0.76	-0.9
2,582,155	+		PFLU_RS11635	0.79	-0.1
2,582,170	+		PFLU_RS11635	0.80	+0.1
2,582,170	+		PFLU_RS11635	0.80	+1.7
2,582,170	+		PFLU_RS11635	0.80	-2.9
2,582,171	-		PFLU_RS11635	0.80	-0.1
2,582,202	+		PFLU_RS11635	0.84	+0.0
2,582,202	+		PFLU_RS11635	0.84	-2.4
2,582,203	-		PFLU_RS11635	0.84	+3.2
2,582,203	-		PFLU_RS11635	0.84	+0.8
2,582,203	-		PFLU_RS11635	0.84	+1.5
2,582,203	-		PFLU_RS11635	0.84	-1.7
2,582,203	-		PFLU_RS11635	0.84	-1.8
2,582,245	-		PFLU_RS11635	0.88	-0.1
2,582,245	-		PFLU_RS11635	0.88	-0.3
2,582,246	+		PFLU_RS11635	0.88	+0.9
2,582,246	+		PFLU_RS11635	0.88	+2.0
2,582,246	+		PFLU_RS11635	0.88	-0.9
2,582,246	+		PFLU_RS11635	0.88	-1.5
2,582,246	+		PFLU_RS11635	0.88	-2.5
2,582,246	+		PFLU_RS11635	0.88	-1.1
2,582,246	+		PFLU_RS11635	0.88	-1.1
2,582,246	+		PFLU_RS11635	0.88	+1.5
2,582,246	+		PFLU_RS11635	0.88	-1.5
2,582,246	+		PFLU_RS11635	0.88	-1.3
2,582,246	+		PFLU_RS11635	0.88	-0.8
2,582,246	+		PFLU_RS11635	0.88	+1.4
2,582,246	+		PFLU_RS11635	0.88	+0.1
2,582,246	+		PFLU_RS11635	0.88	-2.3
2,582,246	+		PFLU_RS11635	0.88	-0.5
2,582,246	+		PFLU_RS11635	0.88	-0.1
2,582,246	+		PFLU_RS11635	0.88	-1.2
2,582,246	+		PFLU_RS11635	0.88	-0.1
2,582,246	+		PFLU_RS11635	0.88	-0.5
2,582,246	+		PFLU_RS11635	0.88	-0.1
2,582,246	+		PFLU_RS11635	0.88	-1.1
2,582,247	-		PFLU_RS11635	0.88	-2.0
2,582,247	-		PFLU_RS11635	0.88	-0.5
2,582,247	-		PFLU_RS11635	0.88	-0.6
2,582,247	-		PFLU_RS11635	0.88	+0.0
2,582,247	-		PFLU_RS11635	0.88	+2.3
2,582,247	-		PFLU_RS11635	0.88	-0.5
2,582,247	-		PFLU_RS11635	0.88	+0.2
2,582,247	-		PFLU_RS11635	0.88	+0.5
2,582,247	-		PFLU_RS11635	0.88	+1.2
2,582,247	-		PFLU_RS11635	0.88	+1.0
2,582,247	-		PFLU_RS11635	0.88	+1.8
2,582,247	-		PFLU_RS11635	0.88	-0.9
2,582,247	-		PFLU_RS11635	0.88	-2.1
2,582,247	-		PFLU_RS11635	0.88	+1.8
2,582,247	-		PFLU_RS11635	0.88	+1.5
2,582,247	-		PFLU_RS11635	0.88	+1.8
2,582,247	-		PFLU_RS11635	0.88	-1.0
2,582,247	-		PFLU_RS11635	0.88	+0.1
2,582,247	-		PFLU_RS11635	0.88	+1.2
2,582,247	-		PFLU_RS11635	0.88	+0.5
2,582,247	-		PFLU_RS11635	0.88	-2.1
2,582,247	-		PFLU_RS11635	0.88	-0.5
2,582,247	-		PFLU_RS11635	0.88	-0.1
2,582,247	-		PFLU_RS11635	0.88	-0.3
2,582,247	-		PFLU_RS11635	0.88	+1.0
2,582,247	-		PFLU_RS11635	0.88	+0.1
2,582,250	+		PFLU_RS11635	0.88	+1.9
2,582,250	+		PFLU_RS11635	0.88	-1.1
2,582,250	+		PFLU_RS11635	0.88	+0.6
2,582,400	+				+1.8
2,582,400	+				-2.1
2,582,400	+				-0.8
2,582,400	+				+1.1
2,582,400	+				-1.7
2,582,401	-				-2.4
2,582,401	-				-0.4
2,582,401	-				+0.5
2,582,401	-				-1.1
2,582,401	-				+1.6
2,582,487	+				+0.6
2,582,487	+				-2.3
2,582,488	-				-1.3
2,582,488	-				+0.5
2,582,541	+		PFLU_RS11640	0.10	-0.2
2,582,625	-		PFLU_RS11640	0.16	+1.0
2,582,693	+		PFLU_RS11640	0.20	-1.1
2,582,812	-		PFLU_RS11640	0.28	-1.1
2,582,873	+		PFLU_RS11640	0.31	+0.8
2,583,023	+		PFLU_RS11640	0.41	+0.6
2,583,024	-		PFLU_RS11640	0.41	-2.1
2,583,024	-		PFLU_RS11640	0.41	+1.5
2,583,126	-		PFLU_RS11640	0.47	+0.8
2,583,193	+		PFLU_RS11640	0.52	-1.7
2,583,193	+		PFLU_RS11640	0.52	+1.5
2,583,402	+		PFLU_RS11640	0.65	-1.3
2,583,403	-		PFLU_RS11640	0.65	-1.3
2,583,403	-		PFLU_RS11640	0.65	+2.3
2,583,954	+				-1.3
2,584,052	-				+0.7
2,584,140	+		PFLU_RS11645	0.19	-0.1
2,584,493	-		PFLU_RS11645	0.60	+0.2
2,584,597	+		PFLU_RS11645	0.72	-2.0
2,584,704	-		PFLU_RS11645	0.85	-1.4
2,584,732	+		PFLU_RS11645	0.88	+3.8
2,584,732	+		PFLU_RS11645	0.88	-1.3
2,584,732	+		PFLU_RS11645	0.88	+1.7
2,584,733	-		PFLU_RS11645	0.88	+1.0
2,584,733	-		PFLU_RS11645	0.88	-0.5
2,584,733	-		PFLU_RS11645	0.88	+0.2
2,584,733	-		PFLU_RS11645	0.88	-2.5
2,584,733	-		PFLU_RS11645	0.88	+2.3
2,584,733	-		PFLU_RS11645	0.88	-0.3
2,584,735	-		PFLU_RS11645	0.88	-1.3
2,584,735	-		PFLU_RS11645	0.88	-1.3
2,584,872	+				-2.4
2,584,872	+				-0.5
2,584,872	+				+0.5
2,584,873	-				-0.5
2,584,880	+				-1.4
2,584,880	+				+0.0
2,584,880	+				+1.8
2,584,881	-				+1.5
2,584,885	-				+0.9
2,584,910	+				+1.2