Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28300

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
6,303,827	-		PFLU_RS28295	0.85	-2.4
6,303,880	+		PFLU_RS28295	0.86	+0.6
6,303,880	+		PFLU_RS28295	0.86	+0.2
6,303,880	+		PFLU_RS28295	0.86	+0.3
6,303,880	+		PFLU_RS28295	0.86	+2.6
6,303,880	+		PFLU_RS28295	0.86	-0.7
6,303,881	-		PFLU_RS28295	0.86	-2.7
6,303,881	-		PFLU_RS28295	0.86	+0.2
6,303,881	-		PFLU_RS28295	0.86	-0.6
6,303,881	-		PFLU_RS28295	0.86	+1.0
6,303,881	-		PFLU_RS28295	0.86	+1.4
6,303,881	-		PFLU_RS28295	0.86	-2.7
6,303,881	-		PFLU_RS28295	0.86	+1.3
6,303,881	-		PFLU_RS28295	0.86	-0.5
6,303,881	-		PFLU_RS28295	0.86	-0.3
6,304,341	+				+0.3
6,304,342	-				-2.4
6,304,342	-				-0.1
6,304,387	+				-2.0
6,304,387	+				+1.0
6,304,388	-				+1.1
6,304,510	+				-2.4
6,304,511	-				-2.6
6,304,511	-				+0.2
6,304,597	+				+0.3
6,304,597	+				+0.8
6,304,597	+				+0.5
6,304,597	+				-0.1
6,304,597	+				-2.2
6,304,598	-				-0.2
6,304,598	-				-0.1
6,304,598	-				+1.3
6,304,598	-				-0.4
6,304,598	-				+0.7
6,304,598	-				-0.3
6,304,598	-				+1.5
6,304,598	-				+0.6
6,304,669	+				-1.5
6,304,669	+				-1.8
6,304,669	+				-0.7
6,304,670	-				-2.4
6,304,670	-				+0.1
6,304,670	-				-0.7
6,304,670	-				+1.3
6,304,670	-				+0.8
6,304,670	-				+0.7
6,304,670	-				+1.1
6,304,688	+				+0.5
6,304,688	+				+1.4
6,304,688	+				-0.7
6,304,688	+				-0.4
6,304,688	+				+0.2
6,304,688	+				+0.3
6,304,688	+				+1.1
6,304,688	+				+0.9
6,304,688	+				-0.1
6,304,688	+				+0.6
6,304,688	+				-0.5
6,304,688	+				-1.9
6,304,688	+				-1.2
6,304,688	+				-0.7
6,304,688	+				+0.8
6,304,689	-				+0.3
6,304,689	-				+0.9
6,304,689	-				+1.6
6,304,689	-				-0.5
6,304,689	-				-0.7
6,304,689	-				-2.5
6,304,689	-				+0.9
6,304,689	-				+0.8
6,304,689	-				+1.1
6,304,689	-				-0.3
6,304,689	-				+1.2
6,304,689	-				-0.9
6,304,689	-				-2.1
6,304,701	+				+0.5
6,304,701	+				-0.3
6,304,701	+				-2.1
6,304,701	+				+0.1
6,304,702	-				+1.3
6,304,702	-				+0.1
6,304,702	-				+0.4
6,304,743	+				-0.4
6,304,743	+				-0.8
6,304,743	+				+1.2
6,304,743	+				+0.6
6,304,743	+				+0.2
6,304,743	+				+1.6
6,304,743	+				+1.3
6,304,744	-				+2.0
6,304,744	-				+0.4
6,304,744	-				-0.6
6,304,744	-				-1.2
6,304,744	-				+0.1
6,304,744	-				-0.5
6,304,744	-				+0.0
6,304,785	+				+0.1
6,304,785	+				+1.5
6,304,785	+				+0.3
6,304,786	-				-1.6
6,304,826	+				-0.7
6,304,827	-				-1.7
6,304,827	-				-1.5
6,304,997	+				+0.9
6,304,998	-				+1.0
6,304,998	-				+0.2
6,304,998	-				-2.1
6,305,435	+		PFLU_RS28300	0.31	+2.9
6,305,683	+		PFLU_RS28300	0.43	-1.7
6,305,683	+		PFLU_RS28300	0.43	-0.7
6,305,683	+		PFLU_RS28300	0.43	-0.7
6,305,683	+		PFLU_RS28300	0.43	+1.9
6,305,683	+		PFLU_RS28300	0.43	+0.2
6,305,683	+		PFLU_RS28300	0.43	+0.6
6,305,684	-		PFLU_RS28300	0.43	-1.5
6,305,684	-		PFLU_RS28300	0.43	+0.7
6,305,684	-		PFLU_RS28300	0.43	-1.1
6,305,684	-		PFLU_RS28300	0.43	+0.9
6,305,684	-		PFLU_RS28300	0.43	-1.3
6,305,684	-		PFLU_RS28300	0.43	-2.5
6,305,684	-		PFLU_RS28300	0.43	+1.6
6,305,684	-		PFLU_RS28300	0.43	+0.1
6,305,684	-		PFLU_RS28300	0.43	+0.6
6,305,684	-		PFLU_RS28300	0.43	+0.3
6,305,905	+		PFLU_RS28300	0.54	+0.0
6,305,906	-		PFLU_RS28300	0.54	-0.1
6,305,906	-		PFLU_RS28300	0.54	-0.7
6,306,005	+		PFLU_RS28300	0.59	-0.4
6,306,005	+		PFLU_RS28300	0.59	-0.6
6,306,005	+		PFLU_RS28300	0.59	-0.8
6,306,005	+		PFLU_RS28300	0.59	-0.3
6,306,005	+		PFLU_RS28300	0.59	+1.9
6,306,006	-		PFLU_RS28300	0.59	+2.5
6,306,006	-		PFLU_RS28300	0.59	+1.0
6,306,006	-		PFLU_RS28300	0.59	-2.9
6,306,006	-		PFLU_RS28300	0.59	+0.2
6,306,253	-		PFLU_RS28300	0.71	-0.1
6,306,697	+				-1.4
6,306,697	+				+0.2
6,306,697	+				-1.1
6,306,697	+				+0.1
6,306,697	+				-0.4
6,306,697	+				-1.8
6,306,697	+				+0.9
6,306,697	+				+0.1
6,306,697	+				-0.6
6,306,698	-				+2.3
6,306,698	-				-2.5
6,306,698	-				+0.8
6,306,698	-				+1.1
6,306,698	-				+0.9
6,306,698	-				+0.2
6,306,698	-				+0.0
6,306,698	-				-0.9
6,306,698	-				+0.3
6,306,709	+				+0.1
6,306,709	+				-0.5
6,306,709	+				+1.0
6,306,709	+				-0.9
6,306,709	+				-0.9
6,306,710	-				+0.3
6,306,710	-				+0.3
6,306,710	-				-0.4
6,306,710	-				-1.7
6,306,710	-				+1.2
6,306,730	+				-1.6
6,307,049	+		PFLU_RS28305	0.39	+1.1
6,307,050	-		PFLU_RS28305	0.40	-0.8
6,307,136	-		PFLU_RS28305	0.56	+0.4
6,307,227	+		PFLU_RS28305	0.73	-0.6
6,307,227	+		PFLU_RS28305	0.73	-1.1
6,307,227	+		PFLU_RS28305	0.73	-0.1
6,307,227	+		PFLU_RS28305	0.73	+1.3
6,307,227	+		PFLU_RS28305	0.73	-0.1
6,307,227	+		PFLU_RS28305	0.73	-1.8
6,307,227	+		PFLU_RS28305	0.73	-0.9
6,307,227	+		PFLU_RS28305	0.73	+1.9
6,307,227	+		PFLU_RS28305	0.73	-0.1
6,307,227	+		PFLU_RS28305	0.73	+0.5
6,307,227	+		PFLU_RS28305	0.73	-1.2
6,307,227	+		PFLU_RS28305	0.73	-1.4
6,307,227	+		PFLU_RS28305	0.73	+0.3
6,307,227	+		PFLU_RS28305	0.73	+0.3
6,307,228	-		PFLU_RS28305	0.74	-0.9
6,307,228	-		PFLU_RS28305	0.74	+0.7
6,307,228	-		PFLU_RS28305	0.74	-0.1
6,307,228	-		PFLU_RS28305	0.74	-0.9
6,307,228	-		PFLU_RS28305	0.74	-0.8
6,307,228	-		PFLU_RS28305	0.74	-0.4
6,307,228	-		PFLU_RS28305	0.74	+0.4
6,307,228	-		PFLU_RS28305	0.74	-1.0
6,307,228	-		PFLU_RS28305	0.74	-0.7
6,307,228	-		PFLU_RS28305	0.74	+1.7
6,307,228	-		PFLU_RS28305	0.74	-1.0
6,307,228	-		PFLU_RS28305	0.74	+0.8
6,307,228	-		PFLU_RS28305	0.74	+0.2
6,307,228	-		PFLU_RS28305	0.74	+1.3
6,307,228	-		PFLU_RS28305	0.74	+1.3
6,307,228	-		PFLU_RS28305	0.74	+1.1
6,307,228	-		PFLU_RS28305	0.74	-1.2
6,307,228	-		PFLU_RS28305	0.74	+3.2
6,307,228	-		PFLU_RS28305	0.74	+1.4
6,307,228	-		PFLU_RS28305	0.74	-2.1
6,307,443	+		PFLU_RS28310	0.17	-0.7
6,307,443	+		PFLU_RS28310	0.17	-2.4
6,307,701	+		PFLU_RS28310	0.88	-0.7
6,307,702	-		PFLU_RS28310	0.88	-1.6
6,307,757	+				+1.7
6,307,757	+				-0.2
6,307,757	+				-0.9
6,307,758	-				-0.9
6,307,758	-				+0.9
6,307,758	-				+0.1
6,307,758	-				-2.3
6,307,761	+				-0.3
6,307,761	+				-0.6
6,307,761	+				+0.1
6,307,761	+				+0.1
6,307,761	+				-1.3
6,307,761	+				+0.3
6,307,761	+				-2.4
6,307,761	+				+1.9
6,307,761	+				+0.3
6,307,761	+				-1.8
6,307,762	-				+1.0
6,307,762	-				-2.1
6,307,762	-				+1.4
6,307,762	-				+0.4
6,307,762	-				-0.7
6,307,762	-				-1.5
6,307,762	-				-0.2
6,307,762	-				-0.3
6,307,762	-				-0.1
6,307,762	-				+1.2
6,307,762	-				-0.9
6,307,762	-				-0.6
6,307,762	-				+1.1
6,307,806	+				+1.9
6,307,806	+				+1.6
6,307,806	+				+0.6
6,307,807	-				-1.1
6,307,807	-				+1.2
6,307,807	-				+2.7
6,307,828	+				+0.7
6,307,828	+				+1.3
6,307,828	+				+1.2
6,307,829	-				-0.3
6,307,829	-				-0.4
6,307,829	-				-0.8
6,307,829	-				-3.0