Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29710

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
6,602,581	+		PFLU_RS29700	0.50	+1.8
6,602,581	+		PFLU_RS29700	0.50	+0.8
6,602,756	+		PFLU_RS29700	0.65	+0.3
6,602,757	-		PFLU_RS29700	0.65	+1.2
6,602,757	-		PFLU_RS29700	0.65	+0.8
6,602,757	-		PFLU_RS29700	0.65	+0.6
6,602,855	+		PFLU_RS29700	0.74	-0.7
6,602,855	+		PFLU_RS29700	0.74	-0.4
6,602,889	+		PFLU_RS29700	0.77	-0.9
6,602,925	+		PFLU_RS29700	0.80	-1.6
6,602,925	+		PFLU_RS29700	0.80	+0.2
6,602,926	-		PFLU_RS29700	0.80	+0.1
6,603,032	+		PFLU_RS29700	0.89	-0.6
6,603,032	+		PFLU_RS29700	0.89	-1.1
6,603,032	+		PFLU_RS29700	0.89	-2.0
6,603,033	-		PFLU_RS29700	0.89	+2.0
6,603,033	-		PFLU_RS29700	0.89	+1.0
6,603,033	-		PFLU_RS29700	0.89	-2.3
6,603,110	+				+0.2
6,603,110	+				+0.4
6,603,110	+				-0.3
6,603,111	-				+0.2
6,603,111	-				-0.3
6,603,111	-				+0.4
6,603,111	-				-0.1
6,603,111	-				-1.5
6,603,111	-				-0.2
6,603,167	+				+2.4
6,603,167	+				-0.2
6,603,167	+				-1.2
6,603,167	+				+0.4
6,603,167	+				-2.4
6,603,167	+				+0.6
6,603,167	+				+0.0
6,603,167	+				-0.3
6,603,167	+				-2.0
6,603,167	+				-1.9
6,603,167	+				-1.5
6,603,167	+				+0.5
6,603,167	+				-1.5
6,603,167	+				-0.9
6,603,167	+				+0.6
6,603,167	+				+1.2
6,603,168	-				-0.6
6,603,168	-				-0.2
6,603,168	-				-1.6
6,603,168	-				+0.4
6,603,168	-				-2.0
6,603,168	-				+0.8
6,603,168	-				-0.4
6,603,168	-				-0.3
6,603,168	-				+0.1
6,603,168	-				-0.8
6,603,168	-				-1.0
6,603,168	-				-0.5
6,603,168	-				-0.5
6,603,168	-				-0.0
6,603,168	-				-1.4
6,603,168	-				+0.3
6,603,168	-				-0.4
6,603,168	-				+0.7
6,603,168	-				-2.3
6,603,168	-				-2.8
6,603,168	-				+0.8
6,603,168	-				-0.4
6,603,170	+				+1.4
6,603,170	+				+0.5
6,603,170	+				+0.4
6,603,170	+				+1.0
6,603,170	+				-1.7
6,603,170	+				+0.4
6,603,170	+				-0.0
6,603,170	+				+0.5
6,603,170	+				-0.2
6,603,170	+				+0.0
6,603,170	+				+0.4
6,603,170	+				-0.0
6,603,170	+				+0.2
6,603,170	+				+0.8
6,603,171	-				+0.7
6,603,171	-				+0.9
6,603,171	-				+0.8
6,603,171	-				+0.3
6,603,171	-				-2.4
6,603,171	-				+0.6
6,603,171	-				+1.4
6,603,171	-				-2.0
6,603,171	-				-0.6
6,603,171	-				-3.2
6,603,171	-				+0.8
6,603,174	+				-0.5
6,603,174	+				+0.8
6,603,174	+				-2.4
6,603,174	+				+1.1
6,603,174	+				-0.8
6,603,174	+				+1.1
6,603,174	+				+0.6
6,603,174	+				+0.9
6,603,174	+				+0.6
6,603,174	+				+1.4
6,603,175	-				-0.3
6,603,175	-				-2.2
6,603,175	-				+0.0
6,603,175	-				+0.1
6,603,175	-				+0.7
6,603,175	-				+1.1
6,603,175	-				-0.6
6,603,191	+				+0.1
6,603,277	-		PFLU_RS29705	0.52	+0.5
6,603,320	+		PFLU_RS29705	0.77	+0.4
6,603,320	+		PFLU_RS29705	0.77	+1.0
6,603,320	+		PFLU_RS29705	0.77	-1.9
6,603,320	+		PFLU_RS29705	0.77	+1.8
6,603,320	+		PFLU_RS29705	0.77	+0.3
6,603,320	+		PFLU_RS29705	0.77	-0.2
6,603,321	-		PFLU_RS29705	0.78	+0.4
6,603,321	-		PFLU_RS29705	0.78	+1.7
6,603,321	-		PFLU_RS29705	0.78	+1.0
6,603,321	-		PFLU_RS29705	0.78	+0.6
6,603,321	-		PFLU_RS29705	0.78	-0.8
6,603,321	-		PFLU_RS29705	0.78	+1.0
6,603,321	-		PFLU_RS29705	0.78	+1.6
6,603,321	-		PFLU_RS29705	0.78	-2.0
6,603,337	+		PFLU_RS29705	0.88	+0.2
6,603,337	+		PFLU_RS29705	0.88	+0.8
6,603,337	+		PFLU_RS29705	0.88	-1.9
6,603,337	+		PFLU_RS29705	0.88	-2.3
6,603,337	+		PFLU_RS29705	0.88	+0.2
6,603,337	+		PFLU_RS29705	0.88	+1.2
6,603,338	-		PFLU_RS29705	0.88	+0.4
6,603,338	-		PFLU_RS29705	0.88	-0.0
6,603,338	-		PFLU_RS29705	0.88	-0.8
6,603,358	+				+0.5
6,603,358	+				+1.1
6,603,358	+				+0.9
6,603,358	+				+0.3
6,603,358	+				-0.1
6,603,358	+				-0.1
6,603,358	+				-0.7
6,603,358	+				+0.6
6,603,358	+				-2.5
6,603,359	-				+0.1
6,603,359	-				-0.5
6,603,359	-				-0.1
6,603,359	-				+1.1
6,603,359	-				-0.2
6,603,359	-				-0.4
6,603,435	+				+0.0
6,603,436	-				-0.3
6,603,436	-				+0.6
6,603,514	+				-1.8
6,603,514	+				-1.4
6,603,514	+				-0.2
6,603,515	-				-0.0
6,603,515	-				+0.1
6,603,515	-				+1.7
6,603,542	-				-0.2
6,603,799	+		PFLU_RS29710	0.44	-0.6
6,603,799	+		PFLU_RS29710	0.44	+1.6
6,603,799	+		PFLU_RS29710	0.44	+1.1
6,603,799	+		PFLU_RS29710	0.44	-0.8
6,603,799	+		PFLU_RS29710	0.44	-0.7
6,603,799	+		PFLU_RS29710	0.44	+1.5
6,603,799	+		PFLU_RS29710	0.44	+0.4
6,603,799	+		PFLU_RS29710	0.44	+1.4
6,603,799	+		PFLU_RS29710	0.44	-0.1
6,603,799	+		PFLU_RS29710	0.44	-0.1
6,603,800	-		PFLU_RS29710	0.44	+0.1
6,603,800	-		PFLU_RS29710	0.44	+2.2
6,603,800	-		PFLU_RS29710	0.44	-0.6
6,603,800	-		PFLU_RS29710	0.44	-0.6
6,603,800	-		PFLU_RS29710	0.44	-1.6
6,603,800	-		PFLU_RS29710	0.44	+0.5
6,603,800	-		PFLU_RS29710	0.44	+0.7
6,603,800	-		PFLU_RS29710	0.44	-1.7
6,603,800	-		PFLU_RS29710	0.44	-1.1
6,603,879	+		PFLU_RS29710	0.58	+1.4
6,603,879	+		PFLU_RS29710	0.58	+1.2
6,603,879	+		PFLU_RS29710	0.58	-0.2
6,603,879	+		PFLU_RS29710	0.58	-1.6
6,603,879	+		PFLU_RS29710	0.58	-0.9
6,603,879	+		PFLU_RS29710	0.58	-0.4
6,603,879	+		PFLU_RS29710	0.58	+0.3
6,603,879	+		PFLU_RS29710	0.58	-1.4
6,603,880	-		PFLU_RS29710	0.58	-0.8
6,603,880	-		PFLU_RS29710	0.58	-1.2
6,603,880	-		PFLU_RS29710	0.58	-2.2
6,603,965	-		PFLU_RS29710	0.73	+0.1
6,604,119	+				-0.9
6,604,119	+				+0.9
6,604,992	+				-0.3
6,604,993	-				+1.4
6,604,993	-				-0.2
6,604,993	-				+1.1
6,605,004	+				-0.7
6,605,004	+				+2.4
6,605,004	+				-0.5
6,605,005	-				-0.1
6,605,005	-				-0.4
6,605,005	-				+0.6
6,605,005	-				+2.4
6,605,005	-				-0.4
6,605,014	+				+0.2
6,605,014	+				-0.8
6,605,015	-				-0.5