Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22940

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
5,158,972	+		PFLU_RS22935	0.10	-1.4
5,158,972	+		PFLU_RS22935	0.10	-2.2
5,158,972	+		PFLU_RS22935	0.10	-1.1
5,158,972	+		PFLU_RS22935	0.10	+0.5
5,158,973	-		PFLU_RS22935	0.10	+0.9
5,158,973	-		PFLU_RS22935	0.10	+0.9
5,158,973	-		PFLU_RS22935	0.10	+1.3
5,159,032	+		PFLU_RS22935	0.16	-0.9
5,159,033	-		PFLU_RS22935	0.16	+0.9
5,159,101	-		PFLU_RS22935	0.23	-0.8
5,159,182	+		PFLU_RS22935	0.30	-0.1
5,159,182	+		PFLU_RS22935	0.30	-0.1
5,159,183	-		PFLU_RS22935	0.30	+0.1
5,159,183	-		PFLU_RS22935	0.30	+0.8
5,159,183	-		PFLU_RS22935	0.30	-0.3
5,159,183	-		PFLU_RS22935	0.30	+1.5
5,159,209	+		PFLU_RS22935	0.33	-2.1
5,159,209	+		PFLU_RS22935	0.33	+0.6
5,159,209	+		PFLU_RS22935	0.33	+1.8
5,159,209	+		PFLU_RS22935	0.33	-0.4
5,159,209	+		PFLU_RS22935	0.33	+1.0
5,159,209	+		PFLU_RS22935	0.33	-0.4
5,159,210	-		PFLU_RS22935	0.33	+0.0
5,159,210	-		PFLU_RS22935	0.33	+0.4
5,159,210	-		PFLU_RS22935	0.33	+0.9
5,159,210	-		PFLU_RS22935	0.33	+1.0
5,159,210	-		PFLU_RS22935	0.33	-3.1
5,159,210	-		PFLU_RS22935	0.33	+0.1
5,159,210	-		PFLU_RS22935	0.33	+0.9
5,159,210	-		PFLU_RS22935	0.33	-0.3
5,159,229	-		PFLU_RS22935	0.35	-2.7
5,159,229	-		PFLU_RS22935	0.35	-0.9
5,159,356	+		PFLU_RS22935	0.47	-1.1
5,159,356	+		PFLU_RS22935	0.47	-1.0
5,159,356	+		PFLU_RS22935	0.47	-0.2
5,159,356	+		PFLU_RS22935	0.47	+0.7
5,159,356	+		PFLU_RS22935	0.47	+0.6
5,159,356	+		PFLU_RS22935	0.47	+3.1
5,159,356	+		PFLU_RS22935	0.47	+0.8
5,159,356	+		PFLU_RS22935	0.47	-0.2
5,159,356	+		PFLU_RS22935	0.47	+2.2
5,159,356	+		PFLU_RS22935	0.47	-3.0
5,159,356	+		PFLU_RS22935	0.47	+0.6
5,159,357	-		PFLU_RS22935	0.47	-1.9
5,159,357	-		PFLU_RS22935	0.47	-1.0
5,159,357	-		PFLU_RS22935	0.47	-2.6
5,159,357	-		PFLU_RS22935	0.47	+1.8
5,159,357	-		PFLU_RS22935	0.47	+1.8
5,159,357	-		PFLU_RS22935	0.47	-3.4
5,159,357	-		PFLU_RS22935	0.47	-0.3
5,159,357	-		PFLU_RS22935	0.47	-2.6
5,159,357	-		PFLU_RS22935	0.47	+0.2
5,159,357	-		PFLU_RS22935	0.47	-2.2
5,159,374	+		PFLU_RS22935	0.48	+0.2
5,159,375	-		PFLU_RS22935	0.49	-1.8
5,159,405	+		PFLU_RS22935	0.51	+0.6
5,159,406	-		PFLU_RS22935	0.51	+0.8
5,159,406	-		PFLU_RS22935	0.51	+0.8
5,159,627	-		PFLU_RS22935	0.72	-0.2
5,159,848	+				-1.2
5,159,848	+				-1.7
5,159,848	+				+1.2
5,159,848	+				-0.8
5,159,849	-				-0.2
5,159,878	+				+0.5
5,159,879	-				+0.3
5,159,879	-				+1.9
5,160,005	+		PFLU_RS22940	0.11	+2.5
5,160,005	+		PFLU_RS22940	0.11	+3.6
5,160,005	+		PFLU_RS22940	0.11	+3.3
5,160,005	+		PFLU_RS22940	0.11	+2.7
5,160,005	+		PFLU_RS22940	0.11	+3.1
5,160,005	+		PFLU_RS22940	0.11	+3.3
5,160,005	+		PFLU_RS22940	0.11	+3.7
5,160,005	+		PFLU_RS22940	0.11	+3.6
5,160,005	+		PFLU_RS22940	0.11	+3.1
5,160,005	+		PFLU_RS22940	0.11	+2.9
5,160,005	+		PFLU_RS22940	0.11	+2.8
5,160,005	+		PFLU_RS22940	0.11	+4.0
5,160,005	+		PFLU_RS22940	0.11	+2.8
5,160,005	+		PFLU_RS22940	0.11	+2.8
5,160,006	-		PFLU_RS22940	0.11	+4.2
5,160,006	-		PFLU_RS22940	0.11	+3.8
5,160,006	-		PFLU_RS22940	0.11	+3.8
5,160,006	-		PFLU_RS22940	0.11	+4.6
5,160,006	-		PFLU_RS22940	0.11	+2.5
5,160,006	-		PFLU_RS22940	0.11	+1.2
5,160,006	-		PFLU_RS22940	0.11	+2.5
5,160,006	-		PFLU_RS22940	0.11	+3.3
5,160,006	-		PFLU_RS22940	0.11	+2.6
5,160,006	-		PFLU_RS22940	0.11	+2.0
5,160,006	-		PFLU_RS22940	0.11	+3.0
5,160,006	-		PFLU_RS22940	0.11	+2.8
5,160,006	-		PFLU_RS22940	0.11	+3.2
5,160,006	-		PFLU_RS22940	0.11	+3.6
5,160,006	-		PFLU_RS22940	0.11	+1.3
5,160,015	+		PFLU_RS22940	0.12	+3.9
5,160,015	+		PFLU_RS22940	0.12	+3.5
5,160,131	+		PFLU_RS22940	0.27	+3.4
5,160,131	+		PFLU_RS22940	0.27	+3.6
5,160,131	+		PFLU_RS22940	0.27	+5.9
5,160,131	+		PFLU_RS22940	0.27	+2.5
5,160,132	-		PFLU_RS22940	0.27	+3.5
5,160,132	-		PFLU_RS22940	0.27	+3.2
5,160,132	-		PFLU_RS22940	0.27	+3.7
5,160,132	-		PFLU_RS22940	0.27	+4.3
5,160,132	-		PFLU_RS22940	0.27	+2.7
5,160,132	-		PFLU_RS22940	0.27	+2.9
5,160,132	-		PFLU_RS22940	0.27	+1.4
5,160,132	-		PFLU_RS22940	0.27	+4.0
5,160,224	+		PFLU_RS22940	0.38	+2.4
5,160,224	+		PFLU_RS22940	0.38	+4.0
5,160,224	+		PFLU_RS22940	0.38	+3.5
5,160,225	-		PFLU_RS22940	0.38	+3.7
5,160,225	-		PFLU_RS22940	0.38	+4.1
5,160,225	-		PFLU_RS22940	0.38	+3.9
5,160,225	-		PFLU_RS22940	0.38	+3.2
5,160,225	-		PFLU_RS22940	0.38	+3.0
5,160,282	+		PFLU_RS22940	0.45	+3.3
5,160,356	+		PFLU_RS22940	0.55	+1.5
5,160,356	+		PFLU_RS22940	0.55	+3.1
5,160,356	+		PFLU_RS22940	0.55	+3.9
5,160,356	+		PFLU_RS22940	0.55	+4.0
5,160,356	+		PFLU_RS22940	0.55	+4.2
5,160,356	+		PFLU_RS22940	0.55	+3.3
5,160,357	-		PFLU_RS22940	0.55	+3.9
5,160,357	-		PFLU_RS22940	0.55	+1.4
5,160,357	-		PFLU_RS22940	0.55	+2.5
5,160,357	-		PFLU_RS22940	0.55	+2.1
5,160,357	-		PFLU_RS22940	0.55	+3.9
5,160,357	-		PFLU_RS22940	0.55	+3.8
5,160,371	+		PFLU_RS22940	0.56	+2.7
5,160,372	-		PFLU_RS22940	0.57	+5.4
5,160,428	+		PFLU_RS22940	0.64	+4.6
5,160,428	+		PFLU_RS22940	0.64	+4.9
5,160,507	-		PFLU_RS22940	0.73	+1.4
5,160,533	+		PFLU_RS22940	0.77	+2.5
5,160,533	+		PFLU_RS22940	0.77	+4.4
5,160,533	+		PFLU_RS22940	0.77	+3.1
5,160,533	+		PFLU_RS22940	0.77	+2.6
5,160,534	-		PFLU_RS22940	0.77	+2.6
5,160,534	-		PFLU_RS22940	0.77	+3.9
5,160,729	+				+3.9
5,160,729	+				+3.3
5,160,729	+				+1.7
5,160,729	+				+1.7
5,160,729	+				-0.5
5,160,729	+				+3.2
5,160,729	+				+3.2
5,160,729	+				+2.5
5,160,729	+				+4.4
5,160,729	+				+2.1
5,160,730	-				+1.5
5,160,730	-				+0.3
5,160,730	-				+0.2
5,160,730	-				+0.5
5,160,730	-				-1.1
5,160,730	-				-0.2
5,160,732	+				+2.7
5,160,732	+				+1.3
5,160,732	+				+1.4
5,160,732	+				-0.4
5,160,732	+				-0.8
5,160,732	+				+0.5
5,160,732	+				+0.1
5,160,732	+				+1.4
5,160,732	+				+0.8
5,160,732	+				+1.4
5,160,732	+				+1.6
5,160,733	-				+0.6
5,160,733	-				-0.5
5,160,733	-				-1.9
5,160,733	-				+1.8
5,160,733	-				-0.5
5,160,733	-				+1.0
5,160,733	-				+0.8
5,160,733	-				-1.3
5,160,733	-				+0.2
5,160,733	-				+2.2
5,160,752	+				+1.0
5,160,753	-				+0.2
5,160,753	-				+0.8
5,160,753	-				+0.5
5,160,761	+				+0.6
5,160,762	-				+1.5
5,160,762	-				+0.8
5,160,762	-				+0.8
5,160,762	-				+0.9
5,160,774	+				-2.1
5,160,774	+				-1.5
5,160,774	+				-0.5
5,160,774	+				-2.0
5,160,774	+				+0.3
5,160,774	+				-2.5
5,160,774	+				-3.0
5,160,774	+				-1.8
5,160,774	+				+1.2
5,160,774	+				+1.6
5,160,774	+				+0.8
5,160,775	-				+0.9
5,160,775	-				+1.9
5,160,775	-				+3.3
5,160,775	-				-0.5
5,160,775	-				-0.7
5,160,775	-				-1.3
5,160,838	-				+0.2
5,160,838	-				-0.5
5,160,838	-				+1.3
5,160,838	-				-1.4
5,160,838	-				-0.6
5,160,838	-				-0.2
5,160,838	-				-2.7
5,160,838	-				+0.9
5,160,838	-				+1.4
5,160,838	-				+0.3
5,160,838	-				+3.2
5,160,838	-				+0.2
5,160,892	+				-1.2
5,160,892	+				+0.8
5,160,892	+				-0.4
5,160,893	-				+0.6
5,160,931	-				-0.3
5,160,931	-				-1.1
5,160,965	+				-1.0
5,160,965	+				-0.7
5,160,965	+				-1.7
5,160,965	+				+0.1
5,160,965	+				+2.0
5,160,965	+				+0.9
5,160,965	+				+0.6
5,160,965	+				-1.7
5,160,965	+				+2.8
5,160,966	-				+0.8
5,160,966	-				+1.7
5,160,966	-				+0.1
5,160,966	-				-0.3
5,160,966	-				+0.9
5,160,966	-				+1.3
5,160,971	+				+1.0
5,160,971	+				-0.1
5,160,971	+				-3.0
5,160,971	+				+0.7
5,160,971	+				-1.7
5,160,971	+				+1.8
5,160,971	+				+1.5
5,160,971	+				-1.5
5,160,972	-				-0.6
5,160,972	-				+0.6
5,160,972	-				-1.5
5,160,972	-				-0.4
5,161,195	+		PFLU_RS22945	0.30	+0.9
5,161,195	+		PFLU_RS22945	0.30	+2.0
5,161,196	-		PFLU_RS22945	0.30	-1.7
5,161,289	+		PFLU_RS22945	0.40	+0.1
5,161,289	+		PFLU_RS22945	0.40	+0.1
5,161,289	+		PFLU_RS22945	0.40	+0.1
5,161,289	+		PFLU_RS22945	0.40	-1.7
5,161,289	+		PFLU_RS22945	0.40	-0.6
5,161,289	+		PFLU_RS22945	0.40	+3.1
5,161,289	+		PFLU_RS22945	0.40	-0.5
5,161,289	+		PFLU_RS22945	0.40	+1.0
5,161,290	-		PFLU_RS22945	0.40	-0.8
5,161,290	-		PFLU_RS22945	0.40	+1.8
5,161,290	-		PFLU_RS22945	0.40	-3.1
5,161,290	-		PFLU_RS22945	0.40	+1.3
5,161,290	-		PFLU_RS22945	0.40	-0.4
5,161,290	-		PFLU_RS22945	0.40	+0.4
5,161,290	-		PFLU_RS22945	0.40	-0.4
5,161,290	-		PFLU_RS22945	0.40	+1.5
5,161,290	-		PFLU_RS22945	0.40	+0.5
5,161,290	-		PFLU_RS22945	0.40	+0.2
5,161,290	-		PFLU_RS22945	0.40	-0.2
5,161,290	-		PFLU_RS22945	0.40	-0.6
5,161,290	-		PFLU_RS22945	0.40	+1.8
5,161,290	-		PFLU_RS22945	0.40	+1.4
5,161,290	-		PFLU_RS22945	0.40	-1.2
5,161,290	-		PFLU_RS22945	0.40	+0.9
5,161,298	+		PFLU_RS22945	0.41	-1.9
5,161,298	+		PFLU_RS22945	0.41	+1.4
5,161,298	+		PFLU_RS22945	0.41	-0.3
5,161,298	+		PFLU_RS22945	0.41	+0.6
5,161,298	+		PFLU_RS22945	0.41	+0.6
5,161,298	+		PFLU_RS22945	0.41	-0.1
5,161,298	+		PFLU_RS22945	0.41	-1.0
5,161,298	+		PFLU_RS22945	0.41	+1.2
5,161,298	+		PFLU_RS22945	0.41	+1.8
5,161,298	+		PFLU_RS22945	0.41	+1.7
5,161,299	-		PFLU_RS22945	0.41	+0.8
5,161,299	-		PFLU_RS22945	0.41	-0.8
5,161,299	-		PFLU_RS22945	0.41	+1.0
5,161,299	-		PFLU_RS22945	0.41	-1.4
5,161,299	-		PFLU_RS22945	0.41	-0.4
5,161,299	-		PFLU_RS22945	0.41	+1.6
5,161,299	-		PFLU_RS22945	0.41	+1.0
5,161,299	-		PFLU_RS22945	0.41	-0.4
5,161,299	-		PFLU_RS22945	0.41	-2.1
5,161,299	-		PFLU_RS22945	0.41	+1.0
5,161,299	-		PFLU_RS22945	0.41	-0.5
5,161,299	-		PFLU_RS22945	0.41	-1.9
5,161,299	-		PFLU_RS22945	0.41	-0.3
5,161,299	-		PFLU_RS22945	0.41	-1.2
5,161,299	-		PFLU_RS22945	0.41	+1.0
5,161,299	-		PFLU_RS22945	0.41	-0.2
5,161,299	-		PFLU_RS22945	0.41	+0.6
5,161,434	+		PFLU_RS22945	0.55	+0.3
5,161,434	+		PFLU_RS22945	0.55	+1.0
5,161,434	+		PFLU_RS22945	0.55	+1.8
5,161,434	+		PFLU_RS22945	0.55	+1.0
5,161,434	+		PFLU_RS22945	0.55	-0.1
5,161,434	+		PFLU_RS22945	0.55	-0.6
5,161,434	+		PFLU_RS22945	0.55	-0.5
5,161,434	+		PFLU_RS22945	0.55	-1.1
5,161,434	+		PFLU_RS22945	0.55	-1.4
5,161,434	+		PFLU_RS22945	0.55	-1.2
5,161,434	+		PFLU_RS22945	0.55	-1.8
5,161,434	+		PFLU_RS22945	0.55	-2.0
5,161,434	+		PFLU_RS22945	0.55	+0.4
5,161,434	+		PFLU_RS22945	0.55	+1.1
5,161,434	+		PFLU_RS22945	0.55	+0.9
5,161,435	-		PFLU_RS22945	0.55	+1.0
5,161,435	-		PFLU_RS22945	0.55	-1.9
5,161,435	-		PFLU_RS22945	0.55	-1.3
5,161,435	-		PFLU_RS22945	0.55	+0.3
5,161,435	-		PFLU_RS22945	0.55	-0.9
5,161,435	-		PFLU_RS22945	0.55	+0.2
5,161,435	-		PFLU_RS22945	0.55	+1.4
5,161,435	-		PFLU_RS22945	0.55	-1.7
5,161,435	-		PFLU_RS22945	0.55	+0.2
5,161,435	-		PFLU_RS22945	0.55	+0.0
5,161,435	-		PFLU_RS22945	0.55	-2.5
5,161,435	-		PFLU_RS22945	0.55	+1.0
5,161,435	-		PFLU_RS22945	0.55	-0.1
5,161,435	-		PFLU_RS22945	0.55	-1.9
5,161,436	+		PFLU_RS22945	0.55	-2.0
5,161,436	+		PFLU_RS22945	0.55	-0.2
5,161,436	+		PFLU_RS22945	0.55	-2.7
5,161,436	+		PFLU_RS22945	0.55	+1.5
5,161,436	+		PFLU_RS22945	0.55	-1.4
5,161,436	+		PFLU_RS22945	0.55	-1.5
5,161,436	+		PFLU_RS22945	0.55	+0.1
5,161,436	+		PFLU_RS22945	0.55	-1.2
5,161,436	+		PFLU_RS22945	0.55	+0.2
5,161,436	+		PFLU_RS22945	0.55	+0.8
5,161,437	-		PFLU_RS22945	0.55	+2.1
5,161,437	-		PFLU_RS22945	0.55	-2.1
5,161,437	-		PFLU_RS22945	0.55	-0.7
5,161,437	-		PFLU_RS22945	0.55	+0.2
5,161,437	-		PFLU_RS22945	0.55	+0.3
5,161,437	-		PFLU_RS22945	0.55	+0.3
5,161,437	-		PFLU_RS22945	0.55	+1.0
5,161,437	-		PFLU_RS22945	0.55	+0.8
5,161,437	-		PFLU_RS22945	0.55	-1.4
5,161,437	-		PFLU_RS22945	0.55	-0.3
5,161,437	-		PFLU_RS22945	0.55	-0.4
5,161,437	-		PFLU_RS22945	0.55	-2.4
5,161,437	-		PFLU_RS22945	0.55	-2.0
5,161,437	-		PFLU_RS22945	0.55	+1.3
5,161,437	-		PFLU_RS22945	0.55	+0.9