Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19285

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
4,360,169	+		PFLU_RS19280	0.42	-2.2
4,360,169	+		PFLU_RS19280	0.42	-2.7
4,360,283	+		PFLU_RS19280	0.51	+0.6
4,360,283	+		PFLU_RS19280	0.51	+1.9
4,360,283	+		PFLU_RS19280	0.51	+0.8
4,360,283	+		PFLU_RS19280	0.51	+1.7
4,360,283	+		PFLU_RS19280	0.51	-0.4
4,360,283	+		PFLU_RS19280	0.51	+0.2
4,360,284	-		PFLU_RS19280	0.51	+0.4
4,360,284	-		PFLU_RS19280	0.51	+0.6
4,360,340	-		PFLU_RS19280	0.55	-0.6
4,360,343	+		PFLU_RS19280	0.55	+2.3
4,360,344	-		PFLU_RS19280	0.55	+1.7
4,360,344	-		PFLU_RS19280	0.55	-1.0
4,360,344	-		PFLU_RS19280	0.55	-0.0
4,360,355	+		PFLU_RS19280	0.56	+4.6
4,360,355	+		PFLU_RS19280	0.56	+0.9
4,360,355	+		PFLU_RS19280	0.56	-0.8
4,360,355	+		PFLU_RS19280	0.56	-0.0
4,360,355	+		PFLU_RS19280	0.56	-0.4
4,360,355	+		PFLU_RS19280	0.56	+2.6
4,360,356	-		PFLU_RS19280	0.56	-0.7
4,360,356	-		PFLU_RS19280	0.56	-0.8
4,360,356	-		PFLU_RS19280	0.56	-2.1
4,360,356	-		PFLU_RS19280	0.56	+1.0
4,360,356	-		PFLU_RS19280	0.56	+1.3
4,360,356	-		PFLU_RS19280	0.56	-0.4
4,360,356	-		PFLU_RS19280	0.56	+0.9
4,360,356	-		PFLU_RS19280	0.56	+2.3
4,360,356	-		PFLU_RS19280	0.56	+1.6
4,360,356	-		PFLU_RS19280	0.56	+1.7
4,360,356	-		PFLU_RS19280	0.56	-0.2
4,360,496	+		PFLU_RS19280	0.67	+0.3
4,360,496	+		PFLU_RS19280	0.67	+2.1
4,360,496	+		PFLU_RS19280	0.67	+2.7
4,360,497	-		PFLU_RS19280	0.68	+0.6
4,360,497	-		PFLU_RS19280	0.68	-1.0
4,360,497	-		PFLU_RS19280	0.68	-3.0
4,360,497	-		PFLU_RS19280	0.68	-1.0
4,360,497	-		PFLU_RS19280	0.68	+0.6
4,360,497	-		PFLU_RS19280	0.68	+0.6
4,360,497	-		PFLU_RS19280	0.68	+1.1
4,360,497	-		PFLU_RS19280	0.68	-0.3
4,360,514	+		PFLU_RS19280	0.69	-0.0
4,360,514	+		PFLU_RS19280	0.69	+2.1
4,360,515	-		PFLU_RS19280	0.69	-0.7
4,360,515	-		PFLU_RS19280	0.69	+0.7
4,360,515	-		PFLU_RS19280	0.69	-1.9
4,360,515	-		PFLU_RS19280	0.69	-1.2
4,360,515	-		PFLU_RS19280	0.69	+1.3
4,360,515	-		PFLU_RS19280	0.69	-0.2
4,360,598	+		PFLU_RS19280	0.76	-1.0
4,360,598	+		PFLU_RS19280	0.76	+2.9
4,360,598	+		PFLU_RS19280	0.76	+1.6
4,360,598	+		PFLU_RS19280	0.76	+0.2
4,360,598	+		PFLU_RS19280	0.76	-0.4
4,360,598	+		PFLU_RS19280	0.76	+2.7
4,360,598	+		PFLU_RS19280	0.76	+0.4
4,360,598	+		PFLU_RS19280	0.76	-2.3
4,360,700	+		PFLU_RS19280	0.84	-0.0
4,360,700	+		PFLU_RS19280	0.84	+1.0
4,360,700	+		PFLU_RS19280	0.84	+2.5
4,360,700	+		PFLU_RS19280	0.84	+2.6
4,360,700	+		PFLU_RS19280	0.84	+0.5
4,360,701	-		PFLU_RS19280	0.84	+1.1
4,360,701	-		PFLU_RS19280	0.84	+0.3
4,360,701	-		PFLU_RS19280	0.84	+1.4
4,360,701	-		PFLU_RS19280	0.84	+0.4
4,360,701	-		PFLU_RS19280	0.84	-0.6
4,360,701	-		PFLU_RS19280	0.84	-1.0
4,360,701	-		PFLU_RS19280	0.84	-0.0
4,360,701	-		PFLU_RS19280	0.84	-0.4
4,360,702	+		PFLU_RS19280	0.84	+0.7
4,360,702	+		PFLU_RS19280	0.84	+1.6
4,360,702	+		PFLU_RS19280	0.84	-0.8
4,360,702	+		PFLU_RS19280	0.84	+1.7
4,360,703	-		PFLU_RS19280	0.84	+0.9
4,360,775	+		PFLU_RS19280	0.90	+1.5
4,360,775	+		PFLU_RS19280	0.90	+2.4
4,360,776	-		PFLU_RS19280	0.90	-0.3
4,360,776	-		PFLU_RS19280	0.90	+0.8
4,360,879	+				+2.8
4,360,879	+				+2.3
4,360,917	-				+1.1
4,360,917	-				-2.1
4,360,917	-				+0.4
4,360,923	-				+1.6
4,360,923	-				-2.1
4,360,966	+				+3.0
4,360,966	+				+2.7
4,360,972	+				+0.6
4,360,972	+				+1.3
4,360,972	+				+2.8
4,360,972	+				-1.0
4,360,972	+				+3.1
4,360,973	-				-0.7
4,360,973	-				-0.4
4,360,982	-				-0.3
4,361,088	+				-1.0
4,361,088	+				+1.2
4,361,088	+				+0.0
4,361,088	+				+3.7
4,361,088	+				+2.3
4,361,089	-				+1.0
4,361,089	-				-1.8
4,361,089	-				-0.6
4,361,115	-				+1.6
4,361,230	+		PFLU_RS19285	0.11	+1.9
4,361,230	+		PFLU_RS19285	0.11	+0.6
4,361,436	+		PFLU_RS19285	0.37	+1.6
4,361,436	+		PFLU_RS19285	0.37	+0.1
4,361,437	-		PFLU_RS19285	0.37	+1.7
4,361,437	-		PFLU_RS19285	0.37	+0.6
4,361,440	+		PFLU_RS19285	0.37	+1.6
4,361,440	+		PFLU_RS19285	0.37	+0.1
4,361,440	+		PFLU_RS19285	0.37	-1.4
4,361,440	+		PFLU_RS19285	0.37	+1.4
4,361,440	+		PFLU_RS19285	0.37	+1.0
4,361,440	+		PFLU_RS19285	0.37	-0.2
4,361,440	+		PFLU_RS19285	0.37	+1.6
4,361,440	+		PFLU_RS19285	0.37	+2.6
4,361,441	-		PFLU_RS19285	0.37	+0.6
4,361,441	-		PFLU_RS19285	0.37	-1.0
4,361,441	-		PFLU_RS19285	0.37	+0.9
4,361,441	-		PFLU_RS19285	0.37	-2.1
4,361,441	-		PFLU_RS19285	0.37	+0.4
4,361,441	-		PFLU_RS19285	0.37	-1.5
4,361,441	-		PFLU_RS19285	0.37	+0.1
4,361,509	+		PFLU_RS19285	0.45	-2.0
4,361,509	+		PFLU_RS19285	0.45	-0.4
4,361,509	+		PFLU_RS19285	0.45	-0.8
4,361,509	+		PFLU_RS19285	0.45	+2.7
4,361,509	+		PFLU_RS19285	0.45	+0.1
4,361,509	+		PFLU_RS19285	0.45	-2.0
4,361,509	+		PFLU_RS19285	0.45	+0.4
4,361,509	+		PFLU_RS19285	0.45	-1.4
4,361,509	+		PFLU_RS19285	0.45	-0.8
4,361,509	+		PFLU_RS19285	0.45	-2.1
4,361,509	+		PFLU_RS19285	0.45	-1.8
4,361,509	+		PFLU_RS19285	0.45	+0.6
4,361,510	-		PFLU_RS19285	0.46	+0.8
4,361,510	-		PFLU_RS19285	0.46	-0.8
4,361,510	-		PFLU_RS19285	0.46	+4.1
4,361,510	-		PFLU_RS19285	0.46	+3.6
4,361,512	-		PFLU_RS19285	0.46	+1.6
4,361,560	+		PFLU_RS19285	0.52	+1.7
4,361,560	+		PFLU_RS19285	0.52	+1.0
4,361,560	+		PFLU_RS19285	0.52	+1.4
4,361,560	+		PFLU_RS19285	0.52	+3.7
4,361,560	+		PFLU_RS19285	0.52	-1.0
4,361,560	+		PFLU_RS19285	0.52	+1.4
4,361,560	+		PFLU_RS19285	0.52	+1.8
4,361,560	+		PFLU_RS19285	0.52	+0.1
4,361,561	-		PFLU_RS19285	0.52	+1.0
4,361,561	-		PFLU_RS19285	0.52	-0.3
4,361,561	-		PFLU_RS19285	0.52	-0.0
4,361,561	-		PFLU_RS19285	0.52	+1.9
4,361,561	-		PFLU_RS19285	0.52	+1.1
4,361,561	-		PFLU_RS19285	0.52	-0.9
4,361,561	-		PFLU_RS19285	0.52	-1.2
4,361,561	-		PFLU_RS19285	0.52	+1.3
4,361,561	-		PFLU_RS19285	0.52	+3.0
4,361,563	+		PFLU_RS19285	0.52	+0.2
4,361,564	-		PFLU_RS19285	0.52	-3.1
4,361,564	-		PFLU_RS19285	0.52	-0.1
4,361,605	+		PFLU_RS19285	0.57	+1.4
4,361,605	+		PFLU_RS19285	0.57	+1.3
4,361,605	+		PFLU_RS19285	0.57	-0.8
4,361,605	+		PFLU_RS19285	0.57	+1.8
4,361,605	+		PFLU_RS19285	0.57	+1.7
4,361,606	-		PFLU_RS19285	0.57	+1.1
4,361,606	-		PFLU_RS19285	0.57	-0.1
4,361,606	-		PFLU_RS19285	0.57	+0.7
4,361,618	-		PFLU_RS19285	0.59	-0.8
4,361,737	+		PFLU_RS19285	0.73	+1.1
4,361,738	-		PFLU_RS19285	0.73	-2.2
4,361,738	-		PFLU_RS19285	0.73	-0.6
4,361,767	+		PFLU_RS19285	0.77	+0.7
4,361,828	-		PFLU_RS19285	0.84	+1.6
4,361,912	-				-0.2
4,362,064	+				+1.3
4,362,065	-				-0.3
4,362,065	-				-1.2
4,362,379	+		PFLU_RS19290	0.45	+4.4
4,362,379	+		PFLU_RS19290	0.45	-1.6
4,362,380	-		PFLU_RS19290	0.45	+0.1
4,362,380	-		PFLU_RS19290	0.45	-0.3
4,362,385	+		PFLU_RS19290	0.46	+0.1
4,362,385	+		PFLU_RS19290	0.46	-0.7
4,362,385	+		PFLU_RS19290	0.46	-2.0
4,362,472	+		PFLU_RS19290	0.55	-1.4
4,362,472	+		PFLU_RS19290	0.55	+0.7
4,362,472	+		PFLU_RS19290	0.55	+2.3
4,362,472	+		PFLU_RS19290	0.55	+1.1
4,362,472	+		PFLU_RS19290	0.55	+1.5
4,362,472	+		PFLU_RS19290	0.55	+0.6
4,362,472	+		PFLU_RS19290	0.55	+2.0
4,362,472	+		PFLU_RS19290	0.55	+3.1
4,362,472	+		PFLU_RS19290	0.55	+0.9
4,362,472	+		PFLU_RS19290	0.55	-0.9
4,362,472	+		PFLU_RS19290	0.55	+3.2
4,362,473	-		PFLU_RS19290	0.56	-0.6
4,362,473	-		PFLU_RS19290	0.56	-2.4
4,362,473	-		PFLU_RS19290	0.56	-2.3
4,362,473	-		PFLU_RS19290	0.56	-0.2
4,362,473	-		PFLU_RS19290	0.56	+1.4
4,362,473	-		PFLU_RS19290	0.56	-0.7
4,362,473	-		PFLU_RS19290	0.56	-1.9
4,362,473	-		PFLU_RS19290	0.56	+1.8
4,362,473	-		PFLU_RS19290	0.56	+1.6
4,362,520	+		PFLU_RS19290	0.61	+1.4
4,362,573	+		PFLU_RS19290	0.67	+0.1
4,362,573	+		PFLU_RS19290	0.67	+0.6
4,362,573	+		PFLU_RS19290	0.67	+1.3
4,362,573	+		PFLU_RS19290	0.67	+2.3
4,362,573	+		PFLU_RS19290	0.67	+3.5
4,362,573	+		PFLU_RS19290	0.67	+1.3
4,362,573	+		PFLU_RS19290	0.67	+1.4
4,362,573	+		PFLU_RS19290	0.67	+0.8
4,362,573	+		PFLU_RS19290	0.67	+0.8
4,362,573	+		PFLU_RS19290	0.67	-0.1
4,362,574	-		PFLU_RS19290	0.67	+1.3
4,362,574	-		PFLU_RS19290	0.67	+1.0
4,362,574	-		PFLU_RS19290	0.67	+0.8
4,362,574	-		PFLU_RS19290	0.67	-0.7
4,362,574	-		PFLU_RS19290	0.67	-0.2
4,362,574	-		PFLU_RS19290	0.67	-0.9
4,362,622	+		PFLU_RS19290	0.73	+2.4
4,362,623	-		PFLU_RS19290	0.73	-1.0
4,362,623	-		PFLU_RS19290	0.73	+0.2
4,362,754	+		PFLU_RS19290	0.88	+3.2
4,362,754	+		PFLU_RS19290	0.88	+2.1
4,362,754	+		PFLU_RS19290	0.88	+3.3
4,362,755	-		PFLU_RS19290	0.88	+1.4
4,362,755	-		PFLU_RS19290	0.88	+1.0
4,362,755	-		PFLU_RS19290	0.88	+2.1
4,362,755	-		PFLU_RS19290	0.88	+0.2
4,362,755	-		PFLU_RS19290	0.88	+1.4
4,362,755	-		PFLU_RS19290	0.88	-1.1
4,362,859	+				+2.6
4,362,860	-				+2.0
4,362,860	-				-1.0
4,362,860	-				+1.3
4,362,882	+				-2.3
4,362,882	+				+1.6
4,362,882	+				+1.4
4,362,882	+				+2.4
4,362,882	+				+3.0
4,362,882	+				+0.9
4,362,882	+				+1.4
4,362,882	+				+1.4
4,362,882	+				-0.8
4,362,882	+				-0.4
4,362,882	+				+3.8
4,362,883	-				-1.9
4,362,883	-				-1.0
4,362,883	-				-0.0
4,362,883	-				-0.2
4,362,890	+				+0.8
4,362,890	+				+1.0
4,362,890	+				+0.5
4,362,891	-				-1.0
4,362,891	-				+0.2
4,362,891	-				-0.0
4,362,891	-				+2.9
4,362,891	-				-0.9
4,362,891	-				-0.8
4,362,891	-				-0.2
4,362,891	-				-0.0
4,362,891	-				+0.3
4,362,907	+				+1.3
4,362,907	+				-1.8