Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20610

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20605 and BWI76_RS20610 are separated by 122 nucleotidesBWI76_RS20610 and BWI76_RS20615 are separated by 89 nucleotides BWI76_RS20605: BWI76_RS20605 - purine-nucleoside phosphorylase, at 4,311,784 to 4,312,617 _RS20605 BWI76_RS20610: BWI76_RS20610 - LysR family transcriptional regulator, at 4,312,740 to 4,313,666 _RS20610 BWI76_RS20615: BWI76_RS20615 - sodium symporter, at 4,313,756 to 4,314,754 _RS20615 Position (kb) 4312 4313 4314Strain fitness (log2 ratio) -1 0 1 2at 4311.811 kb on + strandat 4311.927 kb on + strand, within BWI76_RS20605at 4312.190 kb on - strand, within BWI76_RS20605at 4312.320 kb on + strand, within BWI76_RS20605at 4312.378 kb on + strand, within BWI76_RS20605at 4312.577 kb on + strandat 4312.621 kb on - strandat 4313.394 kb on - strand, within BWI76_RS20610at 4313.416 kb on + strand, within BWI76_RS20610at 4313.476 kb on + strand, within BWI76_RS20610at 4313.493 kb on - strand, within BWI76_RS20610at 4313.530 kb on - strand, within BWI76_RS20610at 4313.582 kb on + strandat 4313.590 kb on - strandat 4313.602 kb on - strandat 4313.924 kb on - strand, within BWI76_RS20615at 4314.152 kb on + strand, within BWI76_RS20615at 4314.227 kb on + strand, within BWI76_RS20615at 4314.234 kb on + strand, within BWI76_RS20615at 4314.242 kb on - strand, within BWI76_RS20615at 4314.604 kb on + strand, within BWI76_RS20615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
4,311,811 + -0.7
4,311,927 + BWI76_RS20605 0.17 +0.2
4,312,190 - BWI76_RS20605 0.49 +0.3
4,312,320 + BWI76_RS20605 0.64 -1.2
4,312,378 + BWI76_RS20605 0.71 +1.7
4,312,577 + -0.8
4,312,621 - -0.5
4,313,394 - BWI76_RS20610 0.71 +2.0
4,313,416 + BWI76_RS20610 0.73 +0.9
4,313,476 + BWI76_RS20610 0.79 -1.1
4,313,493 - BWI76_RS20610 0.81 +0.9
4,313,530 - BWI76_RS20610 0.85 +0.5
4,313,582 + +0.2
4,313,590 - -0.2
4,313,602 - +0.2
4,313,924 - BWI76_RS20615 0.17 -0.5
4,314,152 + BWI76_RS20615 0.40 -0.4
4,314,227 + BWI76_RS20615 0.47 -1.2
4,314,234 + BWI76_RS20615 0.48 -0.5
4,314,242 - BWI76_RS20615 0.49 +1.0
4,314,604 + BWI76_RS20615 0.85 -1.0

Or see this region's nucleotide sequence