Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15890 and BWI76_RS15895 are separated by 14 nucleotides BWI76_RS15895 and BWI76_RS15900 are separated by 208 nucleotides BWI76_RS15900 and BWI76_RS15905 are separated by 136 nucleotides
BWI76_RS15890: BWI76_RS15890 - Zn-dependent oxidoreductase, at 3,297,174 to 3,298,190
_RS15890
BWI76_RS15895: BWI76_RS15895 - starvation-sensing protein RspA, at 3,298,205 to 3,299,419
_RS15895
BWI76_RS15900: BWI76_RS15900 - hypothetical protein, at 3,299,628 to 3,299,953
_RS15900
BWI76_RS15905: BWI76_RS15905 - hypothetical protein, at 3,300,090 to 3,300,431
_RS15905
Position (kb)
3298
3299
3300 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3297.235 kb on - strand at 3297.238 kb on + strand at 3297.248 kb on + strand at 3297.268 kb on + strand at 3297.319 kb on + strand, within BWI76_RS15890 at 3297.371 kb on + strand, within BWI76_RS15890 at 3297.400 kb on - strand, within BWI76_RS15890 at 3297.597 kb on - strand, within BWI76_RS15890 at 3297.619 kb on + strand, within BWI76_RS15890 at 3297.637 kb on - strand at 3297.688 kb on + strand, within BWI76_RS15890 at 3297.696 kb on - strand, within BWI76_RS15890 at 3297.875 kb on + strand, within BWI76_RS15890 at 3297.880 kb on + strand, within BWI76_RS15890 at 3297.943 kb on + strand, within BWI76_RS15890 at 3298.219 kb on - strand at 3298.386 kb on - strand, within BWI76_RS15895 at 3298.552 kb on + strand, within BWI76_RS15895 at 3298.728 kb on - strand, within BWI76_RS15895 at 3298.917 kb on + strand, within BWI76_RS15895 at 3299.171 kb on + strand, within BWI76_RS15895 at 3299.265 kb on - strand, within BWI76_RS15895 at 3299.275 kb on - strand, within BWI76_RS15895 at 3299.327 kb on - strand at 3299.536 kb on - strand at 3299.569 kb on - strand at 3299.633 kb on - strand at 3299.744 kb on - strand, within BWI76_RS15900 at 3299.781 kb on - strand, within BWI76_RS15900 at 3300.394 kb on + strand, within BWI76_RS15905 at 3300.402 kb on - strand at 3300.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,297,235 - -0.3 3,297,238 + -0.5 3,297,248 + +0.1 3,297,268 + -1.5 3,297,319 + BWI76_RS15890 0.14 -1.0 3,297,371 + BWI76_RS15890 0.19 -0.5 3,297,400 - BWI76_RS15890 0.22 -0.5 3,297,597 - BWI76_RS15890 0.42 +0.3 3,297,619 + BWI76_RS15890 0.44 -1.1 3,297,637 - -1.4 3,297,688 + BWI76_RS15890 0.51 -0.2 3,297,696 - BWI76_RS15890 0.51 +0.5 3,297,875 + BWI76_RS15890 0.69 +2.2 3,297,880 + BWI76_RS15890 0.69 -0.7 3,297,943 + BWI76_RS15890 0.76 +1.0 3,298,219 - -0.7 3,298,386 - BWI76_RS15895 0.15 -0.1 3,298,552 + BWI76_RS15895 0.29 +1.4 3,298,728 - BWI76_RS15895 0.43 -1.4 3,298,917 + BWI76_RS15895 0.59 +1.2 3,299,171 + BWI76_RS15895 0.80 +1.5 3,299,265 - BWI76_RS15895 0.87 -0.3 3,299,275 - BWI76_RS15895 0.88 -0.5 3,299,327 - +1.2 3,299,536 - +0.0 3,299,569 - +1.0 3,299,633 - +0.1 3,299,744 - BWI76_RS15900 0.36 -1.2 3,299,781 - BWI76_RS15900 0.47 -1.1 3,300,394 + BWI76_RS15905 0.89 +4.8 3,300,402 - -0.4 3,300,402 - +0.6
Or see this region's nucleotide sequence