Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27750 and BWI76_RS27755 are separated by 107 nucleotides BWI76_RS27755 and BWI76_RS27760 are separated by 102 nucleotides BWI76_RS27760 and BWI76_RS27765 are separated by 118 nucleotides
BWI76_RS27750: BWI76_RS27750 - PTS lactose/cellobiose family transporter subunit IIC, at 5,758,016 to 5,759,341
_RS27750
BWI76_RS27755: BWI76_RS27755 - molecular chaperone TorD, at 5,759,449 to 5,759,751
_RS27755
BWI76_RS27760: BWI76_RS27760 - lactam utilization protein LamB, at 5,759,854 to 5,761,233
_RS27760
BWI76_RS27765: BWI76_RS27765 - MFS transporter, at 5,761,352 to 5,762,533
_RS27765
Position (kb) 5759
5760
5761
5762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5758.854 kb on - strand, within BWI76_RS27750 at 5759.017 kb on - strand, within BWI76_RS27750 at 5759.017 kb on - strand, within BWI76_RS27750 at 5759.054 kb on - strand, within BWI76_RS27750 at 5759.069 kb on - strand, within BWI76_RS27750 at 5759.069 kb on - strand, within BWI76_RS27750 at 5759.074 kb on + strand, within BWI76_RS27750 at 5759.082 kb on - strand, within BWI76_RS27750 at 5759.089 kb on + strand at 5759.097 kb on - strand, within BWI76_RS27750 at 5759.097 kb on - strand, within BWI76_RS27750 at 5759.121 kb on + strand, within BWI76_RS27750 at 5759.129 kb on - strand, within BWI76_RS27750 at 5759.153 kb on - strand, within BWI76_RS27750 at 5759.209 kb on - strand at 5759.234 kb on + strand at 5759.234 kb on + strand at 5759.234 kb on + strand at 5759.239 kb on + strand at 5759.242 kb on - strand at 5759.242 kb on - strand at 5759.242 kb on - strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on + strand at 5759.262 kb on - strand at 5759.267 kb on + strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.270 kb on - strand at 5759.312 kb on + strand at 5759.318 kb on - strand at 5759.320 kb on - strand at 5759.320 kb on - strand at 5759.330 kb on - strand at 5759.342 kb on - strand at 5759.342 kb on - strand at 5759.435 kb on + strand at 5759.435 kb on + strand at 5759.443 kb on - strand at 5759.443 kb on - strand at 5759.489 kb on + strand, within BWI76_RS27755 at 5759.494 kb on + strand, within BWI76_RS27755 at 5759.503 kb on + strand, within BWI76_RS27755 at 5759.513 kb on + strand, within BWI76_RS27755 at 5759.513 kb on + strand, within BWI76_RS27755 at 5759.513 kb on + strand, within BWI76_RS27755 at 5759.513 kb on - strand, within BWI76_RS27755 at 5759.521 kb on - strand, within BWI76_RS27755 at 5759.521 kb on - strand, within BWI76_RS27755 at 5759.521 kb on - strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.526 kb on + strand, within BWI76_RS27755 at 5759.531 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.534 kb on - strand, within BWI76_RS27755 at 5759.541 kb on + strand, within BWI76_RS27755 at 5759.549 kb on - strand, within BWI76_RS27755 at 5759.561 kb on + strand, within BWI76_RS27755 at 5759.584 kb on + strand, within BWI76_RS27755 at 5759.584 kb on + strand, within BWI76_RS27755 at 5759.585 kb on - strand, within BWI76_RS27755 at 5759.586 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.592 kb on - strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.602 kb on + strand, within BWI76_RS27755 at 5759.610 kb on - strand, within BWI76_RS27755 at 5759.610 kb on - strand, within BWI76_RS27755 at 5759.613 kb on + strand, within BWI76_RS27755 at 5759.621 kb on - strand, within BWI76_RS27755 at 5759.621 kb on - strand, within BWI76_RS27755 at 5759.660 kb on - strand, within BWI76_RS27755 at 5759.668 kb on - strand, within BWI76_RS27755 at 5759.685 kb on - strand, within BWI76_RS27755 at 5759.685 kb on - strand, within BWI76_RS27755 at 5759.690 kb on - strand, within BWI76_RS27755 at 5759.690 kb on - strand, within BWI76_RS27755 at 5759.704 kb on - strand, within BWI76_RS27755 at 5759.761 kb on + strand at 5759.785 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.794 kb on + strand at 5759.802 kb on - strand at 5759.874 kb on + strand at 5759.882 kb on - strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.894 kb on + strand at 5759.896 kb on + strand at 5759.904 kb on + strand at 5759.904 kb on + strand at 5759.930 kb on + strand at 5759.938 kb on - strand at 5759.955 kb on - strand at 5759.962 kb on - strand at 5759.969 kb on - strand at 5759.970 kb on - strand at 5759.976 kb on - strand at 5759.983 kb on - strand at 5759.983 kb on - strand at 5760.270 kb on - strand, within BWI76_RS27760 at 5760.832 kb on + strand, within BWI76_RS27760 at 5760.972 kb on + strand, within BWI76_RS27760 at 5761.393 kb on + strand at 5761.442 kb on - strand at 5761.472 kb on + strand, within BWI76_RS27765 at 5761.473 kb on + strand, within BWI76_RS27765 at 5761.538 kb on - strand, within BWI76_RS27765 at 5761.557 kb on - strand, within BWI76_RS27765 at 5761.711 kb on + strand, within BWI76_RS27765 at 5761.711 kb on + strand, within BWI76_RS27765 at 5761.719 kb on - strand, within BWI76_RS27765 at 5761.719 kb on - strand, within BWI76_RS27765 at 5761.770 kb on - strand, within BWI76_RS27765 at 5761.810 kb on - strand, within BWI76_RS27765 at 5761.882 kb on + strand, within BWI76_RS27765 at 5762.050 kb on - strand, within BWI76_RS27765 at 5762.100 kb on + strand, within BWI76_RS27765 at 5762.171 kb on + strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.178 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765 at 5762.184 kb on - strand, within BWI76_RS27765
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,758,854 - BWI76_RS27750 0.63 -0.4 5,759,017 - BWI76_RS27750 0.75 +0.1 5,759,017 - BWI76_RS27750 0.75 +0.3 5,759,054 - BWI76_RS27750 0.78 -1.7 5,759,069 - BWI76_RS27750 0.79 +0.6 5,759,069 - BWI76_RS27750 0.79 +0.6 5,759,074 + BWI76_RS27750 0.80 +2.7 5,759,082 - BWI76_RS27750 0.80 +0.9 5,759,089 + +2.2 5,759,097 - BWI76_RS27750 0.82 -0.4 5,759,097 - BWI76_RS27750 0.82 -1.6 5,759,121 + BWI76_RS27750 0.83 +0.7 5,759,129 - BWI76_RS27750 0.84 +0.5 5,759,153 - BWI76_RS27750 0.86 +0.4 5,759,209 - +0.6 5,759,234 + +1.0 5,759,234 + +2.2 5,759,234 + +0.1 5,759,239 + +1.9 5,759,242 - -2.9 5,759,242 - -0.9 5,759,242 - -1.2 5,759,262 + -0.1 5,759,262 + -1.4 5,759,262 + -0.8 5,759,262 + -0.6 5,759,262 + -2.8 5,759,262 + -0.1 5,759,262 + -0.1 5,759,262 + -0.1 5,759,262 + -1.1 5,759,262 + +0.2 5,759,262 + +2.2 5,759,262 - -3.3 5,759,267 + -1.0 5,759,270 - -2.9 5,759,270 - -3.5 5,759,270 - -4.0 5,759,270 - +0.1 5,759,270 - -2.1 5,759,270 - +1.4 5,759,270 - +0.0 5,759,312 + +0.1 5,759,318 - -0.0 5,759,320 - +2.6 5,759,320 - -3.0 5,759,330 - +0.9 5,759,342 - +1.1 5,759,342 - -0.3 5,759,435 + +0.1 5,759,435 + -3.6 5,759,443 - +3.8 5,759,443 - -2.2 5,759,489 + BWI76_RS27755 0.13 +0.8 5,759,494 + BWI76_RS27755 0.15 -0.6 5,759,503 + BWI76_RS27755 0.18 -0.0 5,759,513 + BWI76_RS27755 0.21 -2.6 5,759,513 + BWI76_RS27755 0.21 -0.1 5,759,513 + BWI76_RS27755 0.21 -0.5 5,759,513 - BWI76_RS27755 0.21 +0.7 5,759,521 - BWI76_RS27755 0.24 -0.4 5,759,521 - BWI76_RS27755 0.24 -0.4 5,759,521 - BWI76_RS27755 0.24 +1.1 5,759,526 + BWI76_RS27755 0.25 +2.2 5,759,526 + BWI76_RS27755 0.25 +0.8 5,759,526 + BWI76_RS27755 0.25 +2.2 5,759,526 + BWI76_RS27755 0.25 +0.4 5,759,526 + BWI76_RS27755 0.25 -0.4 5,759,531 - BWI76_RS27755 0.27 -0.1 5,759,534 - BWI76_RS27755 0.28 -1.5 5,759,534 - BWI76_RS27755 0.28 +0.7 5,759,534 - BWI76_RS27755 0.28 -2.9 5,759,534 - BWI76_RS27755 0.28 +0.6 5,759,541 + BWI76_RS27755 0.30 +2.2 5,759,549 - BWI76_RS27755 0.33 +1.3 5,759,561 + BWI76_RS27755 0.37 +0.9 5,759,584 + BWI76_RS27755 0.45 -0.1 5,759,584 + BWI76_RS27755 0.45 -0.8 5,759,585 - BWI76_RS27755 0.45 -1.0 5,759,586 - BWI76_RS27755 0.45 -3.1 5,759,592 - BWI76_RS27755 0.47 -2.4 5,759,592 - +2.2 5,759,592 - BWI76_RS27755 0.47 -1.5 5,759,592 - BWI76_RS27755 0.47 -0.4 5,759,592 - BWI76_RS27755 0.47 -3.3 5,759,602 + BWI76_RS27755 0.50 -3.2 5,759,602 + BWI76_RS27755 0.50 -0.5 5,759,602 + BWI76_RS27755 0.50 -0.9 5,759,602 + BWI76_RS27755 0.50 -0.7 5,759,610 - BWI76_RS27755 0.53 -0.2 5,759,610 - BWI76_RS27755 0.53 -1.8 5,759,613 + BWI76_RS27755 0.54 +0.9 5,759,621 - BWI76_RS27755 0.57 -2.7 5,759,621 - BWI76_RS27755 0.57 +0.5 5,759,660 - BWI76_RS27755 0.70 -0.1 5,759,668 - BWI76_RS27755 0.72 -1.3 5,759,685 - BWI76_RS27755 0.78 -1.5 5,759,685 - BWI76_RS27755 0.78 +0.2 5,759,690 - BWI76_RS27755 0.80 -1.0 5,759,690 - BWI76_RS27755 0.80 -1.1 5,759,704 - BWI76_RS27755 0.84 +1.4 5,759,761 + +0.4 5,759,785 + +3.2 5,759,794 + -1.7 5,759,794 + +1.8 5,759,794 + -2.3 5,759,794 + +0.8 5,759,794 + +0.4 5,759,802 - +2.8 5,759,874 + +0.5 5,759,882 - +1.2 5,759,894 + +0.5 5,759,894 + +0.0 5,759,894 + -0.0 5,759,894 + -1.9 5,759,894 + -0.3 5,759,896 + +0.1 5,759,904 + -2.7 5,759,904 + -0.2 5,759,930 + -1.7 5,759,938 - +0.3 5,759,955 - -0.3 5,759,962 - -2.2 5,759,969 - +0.1 5,759,970 - -0.5 5,759,976 - -1.8 5,759,983 - +1.1 5,759,983 - +0.4 5,760,270 - BWI76_RS27760 0.30 -1.5 5,760,832 + BWI76_RS27760 0.71 -1.2 5,760,972 + BWI76_RS27760 0.81 -0.4 5,761,393 + +1.9 5,761,442 - +0.5 5,761,472 + BWI76_RS27765 0.10 +0.3 5,761,473 + BWI76_RS27765 0.10 -1.3 5,761,538 - BWI76_RS27765 0.16 -0.8 5,761,557 - BWI76_RS27765 0.17 +1.1 5,761,711 + BWI76_RS27765 0.30 +0.6 5,761,711 + BWI76_RS27765 0.30 -2.0 5,761,719 - BWI76_RS27765 0.31 +1.0 5,761,719 - BWI76_RS27765 0.31 -2.8 5,761,770 - BWI76_RS27765 0.35 -0.8 5,761,810 - BWI76_RS27765 0.39 -0.3 5,761,882 + BWI76_RS27765 0.45 -0.8 5,762,050 - BWI76_RS27765 0.59 +1.5 5,762,100 + BWI76_RS27765 0.63 -0.9 5,762,171 + BWI76_RS27765 0.69 -1.1 5,762,178 - BWI76_RS27765 0.70 +0.1 5,762,178 - BWI76_RS27765 0.70 -0.5 5,762,184 - BWI76_RS27765 0.70 -0.6 5,762,184 - BWI76_RS27765 0.70 -0.2
Or see this region's nucleotide sequence