Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19560

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19555 and BWI76_RS19560 are separated by 165 nucleotidesBWI76_RS19560 and BWI76_RS19565 are separated by 152 nucleotides BWI76_RS19555: BWI76_RS19555 - Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data), at 4,087,643 to 4,089,502 _RS19555 BWI76_RS19560: BWI76_RS19560 - beta-1,4-xylanase, at 4,089,668 to 4,090,501 _RS19560 BWI76_RS19565: BWI76_RS19565 - tRNA dihydrouridine(16) synthase DusC, at 4,090,654 to 4,091,592 _RS19565 Position (kb) 4089 4090 4091Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4088.833 kb on + strand, within BWI76_RS19555at 4089.122 kb on + strand, within BWI76_RS19555at 4089.130 kb on + strand, within BWI76_RS19555at 4089.167 kb on - strand, within BWI76_RS19555at 4089.430 kb on + strandat 4089.438 kb on - strandat 4089.470 kb on + strandat 4089.479 kb on - strandat 4089.545 kb on - strandat 4089.782 kb on + strand, within BWI76_RS19560at 4089.866 kb on - strand, within BWI76_RS19560at 4089.985 kb on - strand, within BWI76_RS19560at 4090.013 kb on - strand, within BWI76_RS19560at 4090.071 kb on - strand, within BWI76_RS19560at 4090.120 kb on + strand, within BWI76_RS19560at 4090.156 kb on - strand, within BWI76_RS19560at 4090.224 kb on - strand, within BWI76_RS19560at 4090.303 kb on + strand, within BWI76_RS19560at 4090.432 kb on - strandat 4090.436 kb on - strandat 4090.596 kb on - strandat 4090.715 kb on + strandat 4090.723 kb on - strandat 4090.723 kb on - strandat 4090.733 kb on + strandat 4090.856 kb on - strand, within BWI76_RS19565at 4090.858 kb on + strand, within BWI76_RS19565at 4090.906 kb on + strand, within BWI76_RS19565at 4091.197 kb on + strand, within BWI76_RS19565at 4091.311 kb on - strand, within BWI76_RS19565at 4091.436 kb on + strand, within BWI76_RS19565at 4091.444 kb on - strand, within BWI76_RS19565

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,088,833 + BWI76_RS19555 0.64 +0.5
4,089,122 + BWI76_RS19555 0.80 +1.7
4,089,130 + BWI76_RS19555 0.80 -1.0
4,089,167 - BWI76_RS19555 0.82 +0.7
4,089,430 + +0.3
4,089,438 - +0.8
4,089,470 + +0.3
4,089,479 - +0.3
4,089,545 - +1.9
4,089,782 + BWI76_RS19560 0.14 +0.7
4,089,866 - BWI76_RS19560 0.24 -1.0
4,089,985 - BWI76_RS19560 0.38 -3.6
4,090,013 - BWI76_RS19560 0.41 +0.0
4,090,071 - BWI76_RS19560 0.48 +0.7
4,090,120 + BWI76_RS19560 0.54 +3.3
4,090,156 - BWI76_RS19560 0.59 +0.9
4,090,224 - BWI76_RS19560 0.67 +1.3
4,090,303 + BWI76_RS19560 0.76 -0.7
4,090,432 - +0.1
4,090,436 - -1.9
4,090,596 - -1.3
4,090,715 + -0.2
4,090,723 - -1.0
4,090,723 - -1.2
4,090,733 + -0.1
4,090,856 - BWI76_RS19565 0.22 -0.8
4,090,858 + BWI76_RS19565 0.22 -0.2
4,090,906 + BWI76_RS19565 0.27 -1.2
4,091,197 + BWI76_RS19565 0.58 +0.3
4,091,311 - BWI76_RS19565 0.70 +0.0
4,091,436 + BWI76_RS19565 0.83 +0.9
4,091,444 - BWI76_RS19565 0.84 -0.5

Or see this region's nucleotide sequence