Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13370

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13360 and BWI76_RS13365 are separated by 192 nucleotidesBWI76_RS13365 and BWI76_RS13370 are separated by 94 nucleotidesBWI76_RS13370 and BWI76_RS13375 are separated by 248 nucleotides BWI76_RS13360: BWI76_RS13360 - benzoate transporter, at 2,786,424 to 2,787,590 _RS13360 BWI76_RS13365: BWI76_RS13365 - GCN5-like N-acetyltransferase, at 2,787,783 to 2,788,208 _RS13365 BWI76_RS13370: BWI76_RS13370 - hypothetical protein, at 2,788,303 to 2,788,839 _RS13370 BWI76_RS13375: BWI76_RS13375 - protease, at 2,789,088 to 2,791,052 _RS13375 Position (kb) 2788 2789Strain fitness (log2 ratio) -1 0 1 2at 2787.391 kb on - strand, within BWI76_RS13360at 2787.440 kb on - strand, within BWI76_RS13360at 2787.445 kb on - strand, within BWI76_RS13360at 2787.583 kb on - strandat 2787.791 kb on + strandat 2788.548 kb on + strand, within BWI76_RS13370at 2788.548 kb on + strand, within BWI76_RS13370at 2788.621 kb on - strand, within BWI76_RS13370at 2788.680 kb on + strand, within BWI76_RS13370at 2788.789 kb on - strandat 2788.883 kb on + strandat 2788.933 kb on - strandat 2789.034 kb on - strandat 2789.234 kb on + strandat 2789.387 kb on - strand, within BWI76_RS13375at 2789.531 kb on + strand, within BWI76_RS13375at 2789.602 kb on + strand, within BWI76_RS13375at 2789.612 kb on + strand, within BWI76_RS13375at 2789.827 kb on - strand, within BWI76_RS13375

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,787,391 - BWI76_RS13360 0.83 +0.4
2,787,440 - BWI76_RS13360 0.87 +0.5
2,787,445 - BWI76_RS13360 0.87 -0.0
2,787,583 - +0.3
2,787,791 + -1.7
2,788,548 + BWI76_RS13370 0.46 +1.0
2,788,548 + BWI76_RS13370 0.46 +0.1
2,788,621 - BWI76_RS13370 0.59 +2.1
2,788,680 + BWI76_RS13370 0.70 +1.6
2,788,789 - -1.7
2,788,883 + +2.1
2,788,933 - +0.5
2,789,034 - +0.7
2,789,234 + +0.8
2,789,387 - BWI76_RS13375 0.15 -0.6
2,789,531 + BWI76_RS13375 0.23 +1.7
2,789,602 + BWI76_RS13375 0.26 +0.1
2,789,612 + BWI76_RS13375 0.27 +0.0
2,789,827 - BWI76_RS13375 0.38 -0.9

Or see this region's nucleotide sequence